FvH4_5g38090

Zinc finger CCCH domain-containing protein 15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011924
Physical Location & Seq
Forward (+)
28153622 .. 28157895
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38090.t1

Sequence Viewer

Length: 231 bp
ATGGGAGCAGAATCCCAAGTCCACGACTCAAACAGAGAAGCCGAGAACCCAAGTTCGATGACCATGGCCCAATTCCTCGCCTGGAAACGCCAGAAGGACGATGAGGCGTCTGCCAGAAGAGCTGAAGCGGCCAGGAAACGCGCGGAGGACATAGCTGCTGGGACGGTGCAGATGAATGGCCGAGAGCTCTTCGCACATGAGCCCTGGGTTTTTGATAATACTCTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

77

Amino Acids

8.63

Weight (kDa)

5.27

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 18 - 71 7.3e-07 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 141, 143
AciI CCGC 2 cut(s) 128, 143
AcoI YGGCCR 2 cut(s) 129, 178
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 107
AjnI CCWGG 3 cut(s) 80, 131, 203
AluBI AGCT 3 cut(s) 122, 155, 187
AluI AGCT 3 cut(s) 122, 155, 187
Alw21I GWGCWC 1 cut(s) 189
AoxI GGCC 3 cut(s) 66, 129, 178
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 67
BanII GRGCYC 2 cut(s) 189, 204
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 3 cut(s) 82, 133, 205
BisI GCNGC 2 cut(s) 129, 156
BlsI GCNGC 2 cut(s) 130, 157
Bme1390I CCNGG 3 cut(s) 82, 133, 205
BmgT120I GGNCC 1 cut(s) 67
BmrFI CCNGG 3 cut(s) 82, 133, 205
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 63, 203, 204
BseBI CCWGG 3 cut(s) 82, 133, 205
BseDI CCNNGG 3 cut(s) 63, 203, 204
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 141, 143
BshFI GGCC 3 cut(s) 68, 131, 180
BsiHKAI GWGCWC 1 cut(s) 189
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 3 cut(s) 68, 131, 180
Bsp1286I GDGCHC 2 cut(s) 189, 204
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 128, 143
BspANI GGCC 3 cut(s) 68, 131, 180
BspFNI CGCG 2 cut(s) 141, 143
BspQI GCTCTTC 2 cut(s) 112, 194
BssECI CCNNGG 3 cut(s) 63, 203, 204
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 3 cut(s) 82, 133, 205
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 112, 194
BstACI GRCGYC 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 63
BstFNI CGCG 2 cut(s) 141, 143
BstHHI GCGC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 3 cut(s) 82, 133, 205
BstSCI CCNGG 3 cut(s) 80, 131, 203
BstUI CGCG 2 cut(s) 141, 143
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 3 cut(s) 68, 131, 180
BtgI CCRYGG 1 cut(s) 63
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 96
CviAII CATG 2 cut(s) 64, 197
CviJI RGCY 8 cut(s) 41, 68, 122, 131, 155, 180, 187, 202
CviKI_1 RGCY 8 cut(s) 41, 68, 122, 131, 155, 180, 187, 202
EaeI YGGCCR 2 cut(s) 129, 178
Eam1104I CTCTTC 2 cut(s) 112, 194
EarI CTCTTC 2 cut(s) 112, 194
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 2 cut(s) 189, 204
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 80, 131, 203
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 2 cut(s) 189, 204
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 67, 200
FaiI YATR 3 cut(s) 65, 152, 198
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 63, 196
Fnu4HI GCNGC 2 cut(s) 129, 156
FriOI GRGCYC 2 cut(s) 189, 204
Fsp4HI GCNGC 2 cut(s) 129, 156
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 129, 156
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 68, 131, 180
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 67, 200
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 2 cut(s) 11, 26
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 67, 200
HspAI GCGC 1 cut(s) 141
LguI GCTCTTC 2 cut(s) 112, 194
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 9 cut(s) 67, 94, 104, 118, 127, 144, 145, 190, 217
Lsp1109I GCAGC 1 cut(s) 142
MboII GAAGA 2 cut(s) 129, 181
MhlI GDGCHC 2 cut(s) 189, 204
MluCI AATT 1 cut(s) 71
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 86, 97, 139
MspR9I CCNGG 3 cut(s) 82, 133, 205
MvaI CCWGG 3 cut(s) 82, 133, 205
MvnI CGCG 2 cut(s) 141, 143
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 67, 200
NmeAIII GCCGAG 2 cut(s) 67, 206
PasI CCCWGGG 1 cut(s) 204
PciSI GCTCTTC 2 cut(s) 112, 194
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 130, 157
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 80, 131, 203
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 3 cut(s) 80, 131, 203
PspPI GGNCC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 2 cut(s) 112, 194
SatI GCNGC 2 cut(s) 129, 156
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 82, 133, 205
SduI GDGCHC 2 cut(s) 189, 204
SetI ASST 3 cut(s) 124, 157, 189
Sse9I AATT 1 cut(s) 71
SsiI CCGC 2 cut(s) 128, 143
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 80, 131, 203
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 71
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 11
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.