Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0011924

Physical Location & Seq

Genomic Coordinates Reverse (-)

7973 .. 8530

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgggagcagaagcccaagtccacgaaaacagagaagccgagaaccccagttcgatgacgatggcccaattcctcgcctggaaacgccagaaggatgatgatgcatctgccagaagagctgaagcagcgaggaaacgggtagaggacatagctgctgggacagtgcaaatgaatggccgagagcttttcgcacacgaaccttgggtttttgacaacactctttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

75

Amino Acids

8.55

Weight (kDa)

5.27

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22140 AT1G22140 AT1G22140
fragaria_vesca	FvH4_5g38090
prunus_persica	Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097791 RchiOBHm_Chr7g0240051
rosa_multiflora	Rmu_sc0000540.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220470
rosa_rugosa	Rorug07G0332400
rosa_samantha	Rh7AG485800 Rh7BG458900 Rh7CG503100 Rh7DG471500
rosa_wichuraiana	Rw7G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	119, 152, 184
AluI	AGCT	3 cut(s)	119, 152, 184
AoxI	GGCC	2 cut(s)	63, 175
ApeKI	GCWGC	2 cut(s)	125, 152
AspS9I	GGNCC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	137, 139
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	79
BisI	GCNGC	2 cut(s)	126, 153
BlsI	GCNGC	2 cut(s)	127, 154
Bme1390I	CCNGG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	91, 113
BmuI	ACTGGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	137, 139
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	65, 177
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	65, 177
BspANI	GGCC	2 cut(s)	65, 177
BspQI	GCTCTTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	137, 139
BsuRI	GGCC	2 cut(s)	65, 177
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	64
CviJI	RGCY	7 cut(s)	14, 38, 65, 119, 152, 177, 184
CviKI_1	RGCY	7 cut(s)	14, 38, 65, 119, 152, 177, 184
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	200
FaiI	YATR	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	126, 153
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	126, 153
GluI	GCNGC	2 cut(s)	126, 153
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	65, 177
Hpy166II	GTNNAC	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	104, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	6 cut(s)	61, 64, 91, 101, 124, 141
Lsp1109I	GCAGC	2 cut(s)	137, 139
LweI	GCATC	2 cut(s)	91, 113
MboII	GAAGA	1 cut(s)	126
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	3 cut(s)	83, 123, 136
Mph1103I	ATGCAT	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NmeAIII	GCCGAG	2 cut(s)	64, 203
NsiI	ATGCAT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	127, 154
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	126, 153
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	4 cut(s)	121, 154, 186, 202
SfaNI	GCATC	2 cut(s)	91, 113
Sse9I	AATT	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	68
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	2 cut(s)	125, 152
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.