Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011924

Physical Location & Seq

Genomic Coordinates Reverse (-)

42105006 .. 42110113

Gene Structure 5108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G511400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGAGCAGAAGCGGAAGAGCAAGAAAATAAGCAAGGCGAGAACCCGAGGTCCATGACGAAGGCCCAGTTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCAAGGAAACGTGCAGAGGACATAGCTTCAGGAACAGTGCAATTGAATGGCCGAGAGCTTTTCGTGCATGAACCTTGGGTTTTTGATAACACTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

76

Amino Acids

8.6

Weight (kDa)

5.37

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22140 AT1G22140 AT1G22140
fragaria_vesca	FvH4_5g38090
prunus_persica	Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097791 RchiOBHm_Chr7g0240051
rosa_multiflora	Rmu_sc0000540.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220470
rosa_rugosa	Rorug07G0332400
rosa_samantha	Rh7AG485800 Rh7BG458900 Rh7CG503100 Rh7DG471500
rosa_wichuraiana	Rw7G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	138, 141
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	3 cut(s)	119, 152, 184
AluI	AGCT	3 cut(s)	119, 152, 184
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	63, 175
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	51, 64
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	51, 64
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	91, 113
BmuI	ACTGGG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	47, 200
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	47, 200
BseGI	GGATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	65, 177
BsiHKCI	CYCGRG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	65, 177
BsoBI	CYCGRG	1 cut(s)	46
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	65, 177
BspQI	GCTCTTC	2 cut(s)	12, 109
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	47, 200
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	12, 109
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 125, 190
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	65, 177
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	51, 64
CviAII	CATG	2 cut(s)	55, 194
CviJI	RGCY	5 cut(s)	65, 119, 152, 177, 184
CviKI_1	RGCY	5 cut(s)	65, 119, 152, 177, 184
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	12, 109
EarI	CTCTTC	2 cut(s)	12, 109
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	138, 141
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	58, 197
FaiI	YATR	3 cut(s)	56, 149, 195
FatI	CATG	2 cut(s)	54, 193
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	65, 177
Hin1II	CATG	2 cut(s)	58, 197
Hpy188III	TCNNGA	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	55, 85
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	104, 140, 166, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 125, 190
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	58, 197
LguI	GCTCTTC	2 cut(s)	12, 109
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	6 cut(s)	64, 80, 91, 101, 124, 141
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	91, 113
MaeII	ACGT	1 cut(s)	136
MboII	GAAGA	2 cut(s)	29, 126
MfeI	CAATTG	1 cut(s)	167
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	3 cut(s)	42, 83, 136
Mph1103I	ATGCAT	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	116, 125, 190
NlaIII	CATG	2 cut(s)	58, 197
NmeAIII	GCCGAG	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	106
PciSI	GCTCTTC	2 cut(s)	12, 109
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	51, 64
SapI	GCTCTTC	2 cut(s)	12, 109
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	51, 64
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	6 cut(s)	53, 121, 139, 154, 186, 202
SfaNI	GCATC	2 cut(s)	91, 113
SinI	GGWCC	1 cut(s)	51
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	139
TasI	AATT	1 cut(s)	167
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.