Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011924

Physical Location & Seq

Genomic Coordinates Forward (+)

68109302 .. 68114973

Gene Structure 5672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG503100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATTAAATTTTTCATTCGTAAGAGGTTTAGAGATTTTTTCGTCCATCAGTTTTGTTGCAAAAAAAAAATAAAAAAAATTGAGGATACGACACCGTTTCCAGTTAGTGTACGGTGCCAGCGTCAAACAATAACGATAAAAGCATCCGACGCCCGACGAAGATCAAACCCTCCTCTATTTGGAAAATCTGTCCGGAAAAAAAAAGGCAGAAGGGAAAATCTCAGAACAATAATGGGAGCAGAAGCCGAAGTCCACGAAAACAGGGAAGCCGAGAACCCAAGTTCGATGACGATGGCTCAATTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCGAGGAAACGGGCAGAGGACATAGCTGCTGGGACAGTGCAAAGGAATGGCCGAGAGCTTTTCGCACACGAACCTTGGGTTTTTGATAACACTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

152

Amino Acids

17.85

Weight (kDa)

10.42

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22140 AT1G22140 AT1G22140
fragaria_vesca	FvH4_5g38090
prunus_persica	Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097791 RchiOBHm_Chr7g0240051
rosa_multiflora	Rmu_sc0000540.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220470
rosa_rugosa	Rorug07G0332400
rosa_samantha	Rh7AG485800 Rh7BG458900 Rh7CG503100 Rh7DG471500
rosa_wichuraiana	Rw7G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	350, 383, 415
AluI	AGCT	3 cut(s)	350, 383, 415
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	356, 383
ApoI	RAATTY	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	368, 370
BccI	CCATC	2 cut(s)	54, 286
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	357, 384
BlsI	GCNGC	2 cut(s)	358, 385
Bme1390I	CCNGG	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	152, 322, 344
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	143, 331
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	368, 370
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	1 cut(s)	161
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	96, 114, 394
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	143, 331
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	368, 370
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	143, 331
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	119
CseI	GACGC	2 cut(s)	110, 158
Csp6I	GTAC	1 cut(s)	110
CviJI	RGCY	7 cut(s)	245, 269, 296, 350, 383, 408, 415
CviKI_1	RGCY	7 cut(s)	245, 269, 296, 350, 383, 408, 415
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	431
FaiI	YATR	1 cut(s)	380
FaqI	GGGAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	357, 384
FokI	GGATG	2 cut(s)	130, 338
Fsp4HI	GCNGC	2 cut(s)	357, 384
GluI	GCNGC	2 cut(s)	357, 384
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	110, 158
Hin1I	GRCGYC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	110, 253
Hpy188I	TCNGA	2 cut(s)	148, 224
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	110, 253
Hpy99I	CGWCG	2 cut(s)	152, 159
HpyAV	CCTTC	2 cut(s)	204, 316
HpyCH4III	ACNGT	3 cut(s)	96, 114, 394
HpyCH4V	TGCA	3 cut(s)	60, 335, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	161
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	9 cut(s)	114, 131, 206, 247, 295, 322, 332, 355, 372
Lsp1109I	GCAGC	2 cut(s)	368, 370
LweI	GCATC	3 cut(s)	152, 322, 344
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	171, 357
MluCI	AATT	3 cut(s)	8, 78, 299
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	18, 76, 180, 183, 314, 354, 367
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
NdeII	GATC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	2 cut(s)	295, 434
NsiI	ATGCAT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	358, 385
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	357, 384
Sau3AI	GATC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	5 cut(s)	29, 352, 385, 417, 433
SfaNI	GCATC	3 cut(s)	152, 322, 344
Sse9I	AATT	3 cut(s)	8, 78, 299
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	96, 114, 394
TaqI	TCGA	1 cut(s)	284
TasI	AATT	3 cut(s)	8, 78, 299
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	2 cut(s)	356, 383
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.