Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011924

Physical Location & Seq

Genomic Coordinates Forward (+)

67391751 .. 67397422

Gene Structure 5672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG471500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATTAAATTTTTCATTCGTAAGAGGTTTAGAGATTTTTTCGTCCATCAGTTTTGTTGCAAAAAAAAAATAAAAAAAATTGAGGATACGACACCGTTTCCAGTTAGTGTACGGTGCCAGCGTCAAACAATAACGATAAAAGCATCCGACGCCCGACGAAGATCAAACCCTCCTCTATTTGGAAAATCTGTCCGGAAAAAAAAAGGCAGAAGGGAAAATCTCAGAACAATAATGGGAGCAGAAGCCGAAGTCCACGAAAACAGGGAAGCCGAGAACCCAAGTTCGATGACGATGGCTCAATTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCGAGGAAACGGGCAGAGGACATAGCTGCTGGGACAGTGCAAAGGAATGGCCGAGAGCTTTTCGCACACGAACCTTGGGTTTTTGATAACACTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

152

Amino Acids

17.85

Weight (kDa)

10.42

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22140 AT1G22140 AT1G22140
fragaria_vesca	FvH4_5g38090
prunus_persica	Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1 Prupe.1G511400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097791 RchiOBHm_Chr7g0240051
rosa_multiflora	Rmu_sc0000540.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220470
rosa_rugosa	Rorug07G0332400
rosa_samantha	Rh7AG485800 Rh7BG458900 Rh7CG503100 Rh7DG471500
rosa_wichuraiana	Rw7G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	350, 383, 415
AluI	AGCT	3 cut(s)	350, 383, 415
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	356, 383
ApoI	RAATTY	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	368, 370
BccI	CCATC	2 cut(s)	54, 286
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	357, 384
BlsI	GCNGC	2 cut(s)	358, 385
Bme1390I	CCNGG	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	152, 322, 344
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	143, 331
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	368, 370
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	1 cut(s)	161
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	96, 114, 394
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	143, 331
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	368, 370
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	143, 331
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	119
CseI	GACGC	2 cut(s)	110, 158
Csp6I	GTAC	1 cut(s)	110
CviJI	RGCY	7 cut(s)	245, 269, 296, 350, 383, 408, 415
CviKI_1	RGCY	7 cut(s)	245, 269, 296, 350, 383, 408, 415
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	431
FaiI	YATR	1 cut(s)	380
FaqI	GGGAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	357, 384
FokI	GGATG	2 cut(s)	130, 338
Fsp4HI	GCNGC	2 cut(s)	357, 384
GluI	GCNGC	2 cut(s)	357, 384
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	110, 158
Hin1I	GRCGYC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	110, 253
Hpy188I	TCNGA	2 cut(s)	148, 224
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	110, 253
Hpy99I	CGWCG	2 cut(s)	152, 159
HpyAV	CCTTC	2 cut(s)	204, 316
HpyCH4III	ACNGT	3 cut(s)	96, 114, 394
HpyCH4V	TGCA	3 cut(s)	60, 335, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	161
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	9 cut(s)	114, 131, 206, 247, 295, 322, 332, 355, 372
Lsp1109I	GCAGC	2 cut(s)	368, 370
LweI	GCATC	3 cut(s)	152, 322, 344
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	171, 357
MluCI	AATT	3 cut(s)	8, 78, 299
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	18, 76, 180, 183, 314, 354, 367
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	149, 347, 356
NdeII	GATC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	2 cut(s)	295, 434
NsiI	ATGCAT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	358, 385
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	357, 384
Sau3AI	GATC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	5 cut(s)	29, 352, 385, 417, 433
SfaNI	GCATC	3 cut(s)	152, 322, 344
Sse9I	AATT	3 cut(s)	8, 78, 299
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	96, 114, 394
TaqI	TCGA	1 cut(s)	284
TasI	AATT	3 cut(s)	8, 78, 299
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	2 cut(s)	356, 383
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.