Rh7BG458900

Zinc finger CCCH domain-containing protein 15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011924
Physical Location & Seq
Forward (+)
54412151 .. 54412708
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG458900.1

Sequence Viewer

Length: 228 bp
ATGGGAGCAGAAGCTCAAGTCCACGAAAACAGAGAAGCCGAGAATCCCAGTTCGATGACGATGGCCCAATTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCGAGGAAACGGGCAGAGGACATAGCTGCTGGGACAGTGCAAATGAATGGCCGAGAGCTTTTCGCGCATGAACCTTGGGTTTTTGATAACACTCTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

75

Amino Acids

8.52

Weight (kDa)

5.27

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 17 - 70 1.4e-06 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 141
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 4 cut(s) 14, 119, 152, 184
AluI AGCT 4 cut(s) 14, 119, 152, 184
AoxI GGCC 2 cut(s) 63, 175
ApeKI GCWGC 2 cut(s) 125, 152
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 137, 139
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 79
BisI GCNGC 2 cut(s) 126, 153
BlsI GCNGC 2 cut(s) 127, 154
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 91, 113
BmuI ACTGGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 137, 139
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 65, 177
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 65, 177
BspANI GGCC 2 cut(s) 65, 177
BspFNI CGCG 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 116, 125, 190
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 137, 139
BsuRI GGCC 2 cut(s) 65, 177
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 194
CviJI RGCY 7 cut(s) 14, 38, 65, 119, 152, 177, 184
CviKI_1 RGCY 7 cut(s) 14, 38, 65, 119, 152, 177, 184
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 1 cut(s) 197
FaiI YATR 2 cut(s) 149, 195
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 126, 153
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 126, 153
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 126, 153
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 65, 177
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 104, 166
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 125, 190
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 191
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 61, 64, 91, 101, 124, 141
Lsp1109I GCAGC 2 cut(s) 137, 139
LweI GCATC 2 cut(s) 91, 113
MboII GAAGA 1 cut(s) 126
MluCI AATT 1 cut(s) 68
MnlI CCTC 3 cut(s) 83, 123, 136
Mph1103I ATGCAT 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 116, 125, 190
NlaIII CATG 1 cut(s) 197
NmeAIII GCCGAG 2 cut(s) 64, 203
NsiI ATGCAT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 127, 154
Psp6I CCWGG 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 77
PspPI GGNCC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 109
SatI GCNGC 2 cut(s) 126, 153
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 79
SetI ASST 5 cut(s) 16, 121, 154, 186, 202
SfaNI GCATC 2 cut(s) 91, 113
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 168
TseI GCWGC 2 cut(s) 125, 152
TspDTI ATGAA 2 cut(s) 185, 210
TspRI CASTG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.