Rw7G040730

Zinc finger CCCH domain-containing protein 15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011924
Physical Location & Seq
Forward (+)
63529870 .. 63534382
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040730.1

Sequence Viewer

Length: 228 bp
ATGGGAGCAGAAGCCCAAGTCCACGAAAACAGAGAAGCCGAGAACCCCAGTTCGATGACGATGGCCCAATTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCGAGGAAACGGGCAGAGGACATAGCTGCTGGGACAGTGCAAATGAATGGCCGAGAGCTTTTCGCACACGAACCTTGGGTTTTTGACAACACTCTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

75

Amino Acids

8.52

Weight (kDa)

5.27

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 17 - 70 1.4e-06 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 141
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 3 cut(s) 119, 152, 184
AluI AGCT 3 cut(s) 119, 152, 184
AoxI GGCC 2 cut(s) 63, 175
ApeKI GCWGC 2 cut(s) 125, 152
AspS9I GGNCC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 137, 139
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 79
BisI GCNGC 2 cut(s) 126, 153
BlsI GCNGC 2 cut(s) 127, 154
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 91, 113
BmuI ACTGGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 137, 139
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 2 cut(s) 65, 177
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 65, 177
BspANI GGCC 2 cut(s) 65, 177
BspQI GCTCTTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 137, 139
BsuRI GGCC 2 cut(s) 65, 177
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 64
CviJI RGCY 7 cut(s) 14, 38, 65, 119, 152, 177, 184
CviKI_1 RGCY 7 cut(s) 14, 38, 65, 119, 152, 177, 184
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 200
FaiI YATR 1 cut(s) 149
FaqI GGGAC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 126, 153
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 126, 153
GluI GCNGC 2 cut(s) 126, 153
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 65, 177
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 104, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 61, 64, 91, 101, 124, 141
Lsp1109I GCAGC 2 cut(s) 137, 139
LweI GCATC 2 cut(s) 91, 113
MboII GAAGA 1 cut(s) 126
MluCI AATT 1 cut(s) 68
MnlI CCTC 3 cut(s) 83, 123, 136
Mph1103I ATGCAT 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NmeAIII GCCGAG 2 cut(s) 64, 203
NsiI ATGCAT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 127, 154
Psp6I CCWGG 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 77
PspPI GGNCC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 109
SatI GCNGC 2 cut(s) 126, 153
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 79
SetI ASST 4 cut(s) 121, 154, 186, 202
SfaNI GCATC 2 cut(s) 91, 113
Sse9I AATT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 68
TscAI CASTG 1 cut(s) 168
TseI GCWGC 2 cut(s) 125, 152
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.