RchiOBHm_Chr7g0240051

Zinc finger CCCH domain-containing protein 15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011924
Physical Location & Seq
Forward (+)
65895943 .. 65900531
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21517

Sequence Viewer

Length: 375 bp
ATGCAATGTCCGGTCAAAACTCAAAACTGCCAGCGTCAAACAATAACGATAAAAGCATCCGACGCCCGACGAAGATCAAACCCTCCTCACTTTGGAAAATCTGACCGGAAAAAAAAAAAAGGCAGAAAGCAAAATCTCAGAACAATAATGGGAGCAGAAGCCCAAGTCCACGAAAACAGAGAAGCCGAGAACCCCAGTTCGATGACGATGGCCCAATTCCTCGCCTGGAAACGCCAGAAGGATGATGATGCATCTGCCAGAAGAGCTGAAGCAGCGAGGAAACGGGCAGAGGACATAGCTGCTGGGACAGTGCAAATGAATGGCCGAGAGCTTTTCGCACACGAACCTTGGGTTTTTGACAACACTCTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

124

Amino Acids

14.24

Weight (kDa)

10.14

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 66 - 119 7.9e-06 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 92
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 266, 299, 331
AluI AGCT 3 cut(s) 266, 299, 331
AoxI GGCC 2 cut(s) 210, 322
ApeKI GCWGC 2 cut(s) 272, 299
AspS9I GGNCC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 284, 286
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 226
BisI GCNGC 2 cut(s) 273, 300
BlsI GCNGC 2 cut(s) 274, 301
Bme1390I CCNGG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 65, 238, 260
BmuI ACTGGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 347
BsaWI WCCGGW 2 cut(s) 10, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 56, 247
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 284, 286
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 212, 324
BsiSI CCGG 2 cut(s) 11, 106
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 2 cut(s) 212, 324
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 2 cut(s) 212, 324
BspCNI CTCAG 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 74
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 56, 247
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 3 cut(s) 62, 263, 272
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 284, 286
BsuRI GGCC 2 cut(s) 212, 324
BtsCI GGATG 2 cut(s) 56, 247
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 2 cut(s) 23, 71
CviJI RGCY 7 cut(s) 161, 185, 212, 266, 299, 324, 331
CviKI_1 RGCY 7 cut(s) 161, 185, 212, 266, 299, 324, 331
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 347
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 347
FaiI YATR 1 cut(s) 296
FaqI GGGAC 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 273, 300
FokI GGATG 2 cut(s) 43, 254
Fsp4HI GCNGC 2 cut(s) 273, 300
GluI GCNGC 2 cut(s) 273, 300
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 212, 324
HapII CCGG 2 cut(s) 11, 106
HgaI GACGC 2 cut(s) 23, 71
Hin1I GRCGYC 1 cut(s) 63
HpaII CCGG 2 cut(s) 11, 106
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 61, 103, 140
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 2 cut(s) 65, 72
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 4, 251, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 263, 272
HpyF3I CTNAG 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 74
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 9 cut(s) 24, 44, 119, 208, 211, 238, 248, 271, 288
Lsp1109I GCAGC 2 cut(s) 284, 286
LweI GCATC 3 cut(s) 65, 238, 260
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 2 cut(s) 84, 273
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 93, 96, 230, 270, 283
Mph1103I ATGCAT 1 cut(s) 253
MspI CCGG 2 cut(s) 11, 106
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 62, 263, 272
NdeII GATC 1 cut(s) 74
NmeAIII GCCGAG 2 cut(s) 211, 350
NsiI ATGCAT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 274, 301
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 256
SatI GCNGC 2 cut(s) 273, 300
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 226
SetI ASST 4 cut(s) 268, 301, 333, 349
SfaNI GCATC 3 cut(s) 65, 238, 260
Sse9I AATT 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 200
TasI AATT 1 cut(s) 215
TscAI CASTG 1 cut(s) 315
TseI GCWGC 2 cut(s) 272, 299
TspDTI ATGAA 1 cut(s) 332
TspRI CASTG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.