FvH4_5g38291

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28318870 .. 28320699
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38291.t1

Sequence Viewer

Length: 1506 bp
ATGTGTGCGTATCTGGGTTTTGGGGAGTTAGTGAATGCACGCAAAGTGTTTGATGAAATGGCCGTGAGAAATGTGGTTTCTTGGACTGCTATTGTTAATGGGTACTTGAACTTTGGGTTGGATGATGAAGCTTTGGGGTTGTTTAGTGAGGCTGTTGACGAGGGGATTCAACCGAATGGGAATATGTTTGTGTGCGTCTTGAATTTGTGTTGTAAAAGGTTGGATTATGAGCTGGGGAGGCAAGTCCATGCCGGGGTTGTGAAAGGTGGGTGGAGTAACATGATTGTTGACAGCACTATTGTTAAGTTGTATGCGCAATGTGGAGAGTTTTCAAGTGCTTTCCGCGCGTTTGATCAGATGCCCAAATTGGATGTCATTTGTTGGACAACTATGATAACTGCTTGTTCTCAACAAGGGCGTGGGATGGAGGCTTTCTCGCTGTTCGCACAGATGTTGAGTGACGGGTTTTCTCCGAATGAGTTTACTGTGTGCGGTGTGCTCAAGGCTTGTGGTGAAGAGAAGGAGTTAAGGTTTGGGAGACAGTTACATGGTGCCATAGTCAAGAAGATTTACAAGAGTGATATTTTTGTAGCCACTGCTCTTGTGGATATGTATGCAAAGTGCGGGGAGATTGAAGACTCGAGATACGTGTTTGATGGAATGAGGAACAGAAACACAGTTACATGGACATCTATTATAGCAGGGTATGCGAGGAAGGGTCTCAGCGAGGAAGCCATATGCCTCTTTCGGCTGATGAAGAGGCGCAATATACATGTCAACAACTTGACTATTGTAAGCATCCTCAGAGCTTGTGGATTGATTAGGTGTTCACCGATAGGTAGGGAAGTTCACGCACATATAATCAAGAACTCAGTTGAAACAAACTTATATCTAGGAAGTACTCTAGTCTGGTTCTACTGCAAGTGCGGTGAGTACTCTACTGCCACAAAGGTCCTCCAGCAAATGCCTCTTAGGGATGTTGTCTCGTGGACTGCCATCATTTCGGGTTGTGCACATCTTGGACATGAGTCTGAAGCTATTGAGTTATTGAAAGAAATGATGGAGGACGGGGTGGAACCCAATGCATTTACTTATTCATCTGCTCTGAAAGCATGCGCTAACTTGGAAACTGTTCTGCATGGTCAATTGGTTCACTCCTCTGCAAATAAAAGTCCGGCCATGTCCAATGTGTATGTGGGGAGCGCTTTGATTTACATGTACGCAAAATGTGGCTATGTAACGGAGGCCTCTCAAGTTTTTGACAGCATGCCGGAACGGAATCTGGTCTCGTGGAAGGCTATGATAGTGGGTTATGCAAGGAATGGTCACTGTCAAGAGGCCTTGAAGCTCATGTATCGAATGCAAGCAGAGGGTTTTGAGCTGGATGATTACATTGTTGCTACGGTGCTCACTGCATGTGGAGATCTTGAGTGGGATATGGATCCTTCATTTGAGTGTAGCCTGCGGTCCAGTGTACTTTATAAGAGGCAGGAAGATGTACCGTAG

Protein Analysis

502

Amino Acids

55.83

Weight (kDa)

5.68

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 23 - 72 1.6e-06 PPR repeat family
PPR_2 PF13041 124 - 170 2e-11 PPR repeat family
PPR PF01535 127 - 156 9.6e-07 PPR repeat
PPR_2 PF13041 224 - 271 2.8e-11 PPR repeat family
PPR PF01535 227 - 257 2.7e-08 PPR repeat
PPR_2 PF13041 325 - 374 1.7e-13 PPR repeat family
PPR_3 PF13812 326 - 373 3.8e-08 Pentatricopeptide repeat domain
PPR PF01535 328 - 358 2.2e-07 PPR repeat
PPR PF01535 429 - 459 9.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013463)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
Acc16I TGCGCA 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 551
AccII CGCG 2 cut(s) 345, 347
AciI CCGC 5 cut(s) 343, 492, 624, 927, 1465
AclWI GGATC 2 cut(s) 1436, 1449
AcoI YGGCCR 2 cut(s) 60, 1176
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 1053
AfaI GTAC 6 cut(s) 104, 901, 935, 1220, 1476, 1500
AfeI AGCGCT 1 cut(s) 1204
AfiI CCNNNNNNNGG 1 cut(s) 253
AflIII ACRYGT 3 cut(s) 648, 772, 1215
AgsI TTSAA 8 cut(s) 109, 170, 202, 333, 635, 878, 1051, 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 6 cut(s) 131, 232, 809, 1037, 1348, 1381
AluI AGCT 6 cut(s) 131, 232, 809, 1037, 1348, 1381
Alw21I GWGCWC 3 cut(s) 501, 1015, 1410
Alw26I GTCTC 4 cut(s) 532, 725, 988, 1291
Alw44I GTGCAC 1 cut(s) 1011
AlwI GGATC 2 cut(s) 1436, 1449
Ama87I CYCGRG 1 cut(s) 640
Aor51HI AGCGCT 1 cut(s) 1204
AoxI GGCC 4 cut(s) 60, 1176, 1245, 1338
ApaLI GTGCAC 1 cut(s) 1011
ApoI RAATTY 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
Asp700I GAANNNNTTC 1 cut(s) 1131
AspLEI GCGC 5 cut(s) 316, 347, 765, 1118, 1205
AspS9I GGNCC 2 cut(s) 952, 1467
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 524, 822, 941
AvaI CYCGRG 1 cut(s) 640
AvaII GGWCC 2 cut(s) 952, 1467
BaeGI GKGCMC 1 cut(s) 1015
BamHI GGATCC 1 cut(s) 1441
BanI GGYRCC 1 cut(s) 551
BauI CACGAG 2 cut(s) 985, 1288
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 3 cut(s) 501, 1015, 1410
BccI CCATC 4 cut(s) 418, 650, 1004, 1054
BceAI ACGGC 1 cut(s) 47
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 4 cut(s) 532, 725, 988, 1291
BfaI CTAG 2 cut(s) 893, 905
BfoI RGCGCY 1 cut(s) 1206
BglII AGATCT 1 cut(s) 1423
BmcAI AGTACT 2 cut(s) 901, 935
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 2 cut(s) 952, 1467
BmeT110I CYCGRG 1 cut(s) 640
BmgT120I GGNCC 2 cut(s) 952, 1467
BmiI GGNNCC 3 cut(s) 553, 1077, 1443
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 348, 807
BoxI GACNNNNGTC 1 cut(s) 1027
BpiI GAAGAC 1 cut(s) 642
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 1 cut(s) 941
BpuEI CTTGAG 3 cut(s) 485, 1236, 1448
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 1440
BsaI GGTCTC 2 cut(s) 725, 1291
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 1470
Bse3DI GCAATG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 1440
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 6 cut(s) 127, 376, 429, 798, 982, 1390
BseJI GATNNNNATC 1 cut(s) 1440
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 736, 817, 885
BseNI ACTGG 1 cut(s) 1470
BseRI GAGGAG 1 cut(s) 1147
BseSI GKGCMC 1 cut(s) 1015
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 345, 347
BshFI GGCC 4 cut(s) 62, 1178, 1247, 1340
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 3 cut(s) 501, 1015, 1410
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 3 cut(s) 252, 1175, 1271
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 4 cut(s) 532, 725, 988, 1291
BsmI GAATGC 2 cut(s) 40, 1365
BsnI GGCC 4 cut(s) 62, 1178, 1247, 1340
Bso31I GGTCTC 2 cut(s) 725, 1291
BsoBI CYCGRG 1 cut(s) 640
Bsp1286I GDGCHC 3 cut(s) 501, 1015, 1410
Bsp143I GATC 3 cut(s) 352, 1423, 1441
BspACI CCGC 5 cut(s) 343, 492, 624, 927, 1465
BspANI GGCC 4 cut(s) 62, 1178, 1247, 1340
BspCNI CTCAG 3 cut(s) 735, 816, 884
BspFNI CGCG 2 cut(s) 345, 347
BspLI GGNNCC 3 cut(s) 553, 1077, 1443
BspPI GGATC 2 cut(s) 1436, 1449
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 2 cut(s) 725, 1291
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 1470
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 352, 1423, 1441
BssSI CACGAG 2 cut(s) 985, 1288
Bst2BI CACGAG 2 cut(s) 985, 1288
Bst4CI ACNGT 7 cut(s) 487, 543, 679, 1132, 1331, 1405, 1503
Bst6I CTCTTC 2 cut(s) 510, 752
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 40, 1114, 1268, 1365, 1463
BstDEI CTNAG 4 cut(s) 722, 803, 871, 971
BstF5I GGATG 6 cut(s) 127, 376, 429, 798, 982, 1390
BstFNI CGCG 2 cut(s) 345, 347
BstH2I RGCGCY 1 cut(s) 1206
BstHHI GCGC 5 cut(s) 316, 347, 765, 1118, 1205
BstKTI GATC 3 cut(s) 355, 1426, 1444
BstMAI GTCTC 4 cut(s) 532, 725, 988, 1291
BstMBI GATC 3 cut(s) 352, 1423, 1441
BstMWI GCNNNNNNNGC 4 cut(s) 238, 344, 707, 1109
BstNSI RCATGY 5 cut(s) 776, 1116, 1219, 1270, 1419
BstPAI GACNNNNGTC 1 cut(s) 1027
BstSCI CCNGG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 1015
BstUI CGCG 2 cut(s) 345, 347
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 1423, 1441
BstYI RGATCY 2 cut(s) 1423, 1441
BsuRI GGCC 4 cut(s) 62, 1178, 1247, 1340
BtsCI GGATG 6 cut(s) 127, 376, 429, 798, 982, 1390
BtsI GCAGTG 2 cut(s) 594, 1410
BtsIMutI CAGTG 4 cut(s) 594, 1327, 1410, 1477
Cac8I GCNNGC 5 cut(s) 40, 1114, 1268, 1365, 1463
CfoI GCGC 5 cut(s) 316, 347, 765, 1118, 1205
Cfr13I GGNCC 2 cut(s) 952, 1467
CseI GACGC 1 cut(s) 184
Csp6I GTAC 6 cut(s) 103, 900, 934, 1219, 1475, 1499
CspCI CAANNNNNGTGG 4 cut(s) 490, 525, 583, 618
CviQI GTAC 6 cut(s) 103, 900, 934, 1219, 1475, 1499
DdeI CTNAG 4 cut(s) 722, 803, 871, 971
DpnI GATC 3 cut(s) 354, 1425, 1443
DpnII GATC 3 cut(s) 352, 1423, 1441
EaeI YGGCCR 2 cut(s) 60, 1176
Eam1104I CTCTTC 2 cut(s) 510, 752
EarI CTCTTC 2 cut(s) 510, 752
Eco147I AGGCCT 2 cut(s) 1247, 1340
Eco31I GGTCTC 2 cut(s) 725, 1291
Eco47I GGWCC 2 cut(s) 952, 1467
Eco47III AGCGCT 1 cut(s) 1204
Eco57I CTGAAG 1 cut(s) 1053
Eco88I CYCGRG 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 952
EcoT22I ATGCAT 1 cut(s) 1087
FauI CCCGC 1 cut(s) 617
FauNDI CATATG 1 cut(s) 737
FbaI TGATCA 1 cut(s) 352
FokI GGATG 6 cut(s) 134, 383, 436, 785, 989, 1397
FspBI CTAG 2 cut(s) 893, 905
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 5 cut(s) 315, 346, 764, 1117, 1204
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 941
HaeII RGCGCY 1 cut(s) 1206
HaeIII GGCC 4 cut(s) 62, 1178, 1247, 1340
HapII CCGG 3 cut(s) 252, 1175, 1271
HgaI GACGC 1 cut(s) 184
HhaI GCGC 5 cut(s) 316, 347, 765, 1118, 1205
Hin6I GCGC 5 cut(s) 314, 345, 763, 1116, 1203
HinP1I GCGC 5 cut(s) 314, 345, 763, 1116, 1203
HincII GTYRAC 3 cut(s) 157, 289, 778
HindII GTYRAC 3 cut(s) 157, 289, 778
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 4 cut(s) 166, 638, 1028, 1279
HpaII CCGG 3 cut(s) 252, 1175, 1271
HphI GGTGA 3 cut(s) 524, 822, 941
Hpy188I TCNGA 5 cut(s) 357, 474, 806, 1033, 1107
Hpy188III TCNNGA 6 cut(s) 199, 562, 642, 865, 1334, 1427
HpyAV CCTTC 4 cut(s) 514, 709, 1288, 1455
HpyCH4III ACNGT 7 cut(s) 487, 543, 679, 1132, 1331, 1405, 1503
HpyCH4IV ACGT 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 344, 707, 1109
HpyF3I CTNAG 4 cut(s) 722, 803, 871, 971
HpySE526I ACGT 1 cut(s) 648
HspAI GCGC 5 cut(s) 314, 345, 763, 1116, 1203
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 352, 1423, 1441
LmnI GCTCC 1 cut(s) 1200
LweI GCATC 2 cut(s) 348, 807
MaeI CTAG 2 cut(s) 893, 905
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 6 cut(s) 275, 458, 543, 679, 1237, 1325
MalI GATC 3 cut(s) 354, 1425, 1443
MboI GATC 3 cut(s) 352, 1423, 1441
MboII GAAGA 5 cut(s) 527, 577, 647, 769, 1505
MfeI CAATTG 1 cut(s) 1145
MflI RGATCY 2 cut(s) 1423, 1441
MhlI GDGCHC 3 cut(s) 501, 1015, 1410
MluCI AATT 3 cut(s) 202, 365, 1145
MlyI GAGTC 2 cut(s) 632, 1037
MmeI TCCRAC 3 cut(s) 99, 201, 362
Mph1103I ATGCAT 1 cut(s) 1087
MroXI GAANNNNTTC 1 cut(s) 1131
MseI TTAA 3 cut(s) 96, 303, 527
MslI CAYNNNNRTG 1 cut(s) 1453
MspI CCGG 3 cut(s) 252, 1175, 1271
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 1145
Mva1269I GAATGC 2 cut(s) 40, 1365
MvnI CGCG 2 cut(s) 345, 347
MwoI GCNNNNNNNGC 4 cut(s) 238, 344, 707, 1109
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 737
NdeII GATC 3 cut(s) 352, 1423, 1441
NlaIV GGNNCC 3 cut(s) 553, 1077, 1443
NmuCI GTSAC 2 cut(s) 458, 1325
NsbI TGCGCA 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 5 cut(s) 776, 1116, 1219, 1270, 1419
PaeI GCATGC 2 cut(s) 1116, 1270
PaeR7I CTCGAG 1 cut(s) 640
PceI AGGCCT 2 cut(s) 1247, 1340
PciI ACATGT 2 cut(s) 772, 1215
PctI GAATGC 2 cut(s) 40, 1365
PdmI GAANNNNTTC 1 cut(s) 1131
PfeI GAWTC 2 cut(s) 166, 1279
PleI GAGTC 2 cut(s) 632, 1036
PpsI GAGTC 2 cut(s) 632, 1036
Ppu21I YACGTR 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 2 cut(s) 772, 1215
PshAI GACNNNNGTC 1 cut(s) 1027
PsiI TTATAA 1 cut(s) 1482
Psp5II RGGWCCY 1 cut(s) 952
PspFI CCCAGC 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 553, 1077, 1443
PspPI GGNCC 2 cut(s) 952, 1467
PspPPI RGGWCCY 1 cut(s) 952
PsuI RGATCY 2 cut(s) 1423, 1441
RsaI GTAC 6 cut(s) 104, 901, 935, 1220, 1476, 1500
RsaNI GTAC 6 cut(s) 103, 900, 934, 1219, 1475, 1499
RseI CAYNNNNRTG 1 cut(s) 1453
SaqAI TTAA 3 cut(s) 96, 303, 527
Sau3AI GATC 3 cut(s) 352, 1423, 1441
Sau96I GGNCC 2 cut(s) 952, 1467
ScaI AGTACT 2 cut(s) 901, 935
SchI GAGTC 2 cut(s) 632, 1037
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 3 cut(s) 501, 1015, 1410
SfaNI GCATC 2 cut(s) 348, 807
Sfr274I CTCGAG 1 cut(s) 640
SinI GGWCC 2 cut(s) 952, 1467
SlaI CTCGAG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 1453
SmlI CTYRAG 4 cut(s) 500, 640, 1251, 1427
SmoI CTYRAG 4 cut(s) 500, 640, 1251, 1427
SphI GCATGC 2 cut(s) 1116, 1270
Sse9I AATT 3 cut(s) 202, 365, 1145
SseBI AGGCCT 2 cut(s) 1247, 1340
SsiI CCGC 5 cut(s) 343, 492, 624, 927, 1465
SspMI CTAG 2 cut(s) 893, 905
StuI AGGCCT 2 cut(s) 1247, 1340
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 7 cut(s) 487, 543, 679, 1132, 1331, 1405, 1503
TaiI ACGT 1 cut(s) 651
TaqI TCGA 2 cut(s) 641, 1357
TasI AATT 3 cut(s) 202, 365, 1145
TatI WGTACW 3 cut(s) 899, 933, 1474
TfiI GAWTC 2 cut(s) 166, 1279
Tru1I TTAA 3 cut(s) 96, 303, 527
Tru9I TTAA 3 cut(s) 96, 303, 527
TscAI CASTG 4 cut(s) 601, 1334, 1417, 1477
TseFI GTSAC 2 cut(s) 458, 1325
Tsp45I GTSAC 2 cut(s) 458, 1325
TspDTI ATGAA 5 cut(s) 69, 141, 770, 1086, 1437
TspGWI ACGGA 2 cut(s) 1256, 1291
TspRI CASTG 4 cut(s) 601, 1334, 1417, 1477
VneI GTGCAC 1 cut(s) 1011
VpaK11BI GGWCC 2 cut(s) 952, 1467
XapI RAATTY 1 cut(s) 202
XceI RCATGY 5 cut(s) 776, 1116, 1219, 1270, 1419
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 1192
XhoI CTCGAG 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 1131
XspI CTAG 2 cut(s) 893, 905
ZrmI AGTACT 2 cut(s) 901, 935
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.