Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037875.1

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 500

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037875.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 499 bp

atgtgtgcgtatttgggttttgggaagttagtccatgcacgcaaggtgttcgacgaaatggctctgagaaatgtggtttcttggaccgctattattaatgggtacttgaactttgggttggatgatgaagctttggggttgtttggtgaggctattgatgaggggattcaaccgaatgggaatatgtttgtgtgtgtgttgaatttgtgttgtaagaggttggattatgagctcgggaggcaaatccatgcagggattgtaaaaggtgggtggagtaacatgattgttgacagcgctattgttaagttgtatgcgcaatgtggagagttgtcatgtgcttttcgcgcgtttgatcagatgccgaagttggatgttgtttgttggacaactatgataactgcttgttctcaacaggggcttgggcaggaggctttctcgctgttctcgcagatgttaagtgatgggttttctccgaatgagtttacggtgtgcggtgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

166

Amino Acids

18.23

Weight (kDa)

4.77

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AccII	CGCG	2 cut(s)	345, 347
AciI	CCGC	2 cut(s)	87, 492
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	104
AfeI	AGCGCT	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	109, 170, 202
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	2 cut(s)	131, 232
AluI	AGCT	2 cut(s)	131, 232
Alw21I	GWGCWC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	96
AspLEI	GCGC	3 cut(s)	296, 316, 347
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	1 cut(s)	455
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BclI	TGATCA	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bse3DI	GCAATG	1 cut(s)	323
BseGI	GGATG	2 cut(s)	127, 376
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	345, 347
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	87, 492
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	345, 347
BsrDI	GCAATG	1 cut(s)	323
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	127, 376
BstFNI	CGCG	2 cut(s)	345, 347
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	296, 316, 347
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 344, 445
BstUI	CGCG	2 cut(s)	345, 347
BtsCI	GGATG	2 cut(s)	127, 376
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	3 cut(s)	296, 316, 347
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	4 cut(s)	35, 248, 280, 333
CviJI	RGCY	6 cut(s)	62, 131, 152, 232, 418, 431
CviKI_1	RGCY	6 cut(s)	62, 131, 152, 232, 418, 431
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	4 cut(s)	38, 251, 283, 336
FaiI	YATR	8 cut(s)	36, 185, 228, 249, 281, 312, 334, 392
FatI	CATG	4 cut(s)	34, 247, 279, 332
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	2 cut(s)	134, 383
FriOI	GRGCYC	1 cut(s)	234
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	3 cut(s)	295, 315, 346
HaeII	RGCGCY	1 cut(s)	297
HhaI	GCGC	3 cut(s)	296, 316, 347
Hin1II	CATG	4 cut(s)	38, 251, 283, 336
Hin6I	GCGC	3 cut(s)	294, 314, 345
HinP1I	GCGC	3 cut(s)	294, 314, 345
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	289, 483
Hpy188I	TCNGA	3 cut(s)	66, 357, 474
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	289, 483
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	38, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 344, 445
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	38, 251, 283, 336
HspAI	GCGC	3 cut(s)	294, 314, 345
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	3 cut(s)	237, 398, 410
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	202
MmeI	TCCRAC	4 cut(s)	99, 201, 348, 362
MnlI	CCTC	5 cut(s)	142, 154, 210, 231, 421
MseI	TTAA	3 cut(s)	96, 303, 455
MvnI	CGCG	2 cut(s)	345, 347
MwoI	GCNNNNNNNGC	3 cut(s)	238, 344, 445
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	38, 251, 283, 336
NsbI	TGCGCA	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	84
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	96, 303, 455
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	5 cut(s)	48, 133, 221, 234, 268
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	84
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	87, 492
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	96, 303, 455
Tru9I	TTAA	3 cut(s)	96, 303, 455
TspDTI	ATGAA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	84
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.