Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Reverse (-)

63883342 .. 63884816

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTGTGCGTATCTGGGTTTTGGGAAGTTAGTCCATGCACGCAAGGTGTTCGACGAAATGGCTGTGAGAAATGTGGTTTCTTGGACCGCTATTATTAATGGGTACTTGAACTTTGGGTTGGATGATGAAGCTTTGGGGTTGTTTGGTGAGGCTATTGATGAGGGGATTCAACCGAATGGGAATATGTTTGTGTGTTTGTTGAATTTGTGTTGTAAGAGGTTGGATTATGAGCTCGGGAGGCAAATCCATGCAGGGATTGTAAAAGGTGGGTGGAGTAACATGATTGTTGACAGCGCTATTGTTAAGTTGTATGCGCAATGTGGGAGTTGTCATTTGGATGTTGTTTGTTGGACAACTATGATAACTGCTTGTTCTCAACAGGGGCATGGGCAGGAGGCTTTCTCGCTGTTCTCGCAGATGTTAAGTGATGGGTTTTCTCCGAATGAGTTTACGGTGTGCGGTGTTCTCAAGGCTTGCGGTGAAGAGAAGGAGTTAAGGTTTGGGAGACAGTTACATGGTGCCATAGTGAAGAAGATTTACGAGAGTGATATTTTTGTAGCCACTTCTCTTGTGGATATGTATGCAAAGTGTGGGGAGATTGAAGACTCGAGAAATGTATTTGATGGAATGAGGAACAGAAACACAGTTACATGGACATCTATTATAGCAGGGTATGCAAGGAAGGGTCTCAGCGAGGAAGCCATATGCCTCTTTCGACTAATGAAGAGGCGAAACATACATGTCAACAACTTGACCATTGTAAGCATCCTTAGAGCTTGTGGATTGATTAGGTATTCACCAATGGGTAGGGAAGTTCACGCACAGATAATCAAACACTCGGTCGAAACAAACTTATATCTAGGAAGTACTCTAGTGTGGTTCTACTGCAAGTGTGGGGATTACTCTACTGCCACAAAAGTCCTCCAACAAATGCCTCTCAGAGATGTTGTCTCGTGGACTGCCATCATTTCTGGTTGTGCACATCTTGGACATGAGTCTGAAGCTATTGAGTTGTTGAAAGAAATGATGGAGGACGGGGTGGAACCCAATGCATTTACTTATTCATCTGCTTTGAAAGCATGTGCTAACTTGGAAACCATTCTGCACGGGCAATTGATTCACTCCTCTGCAAATAAAAGTCCAGCCATGTCCAATGTGTTTGTGGGGAGCGCTTTGATTTACATGTATGCAAAATGTGGCTATGTAACGGAGGCATTTCAAGTTTTTGACAGCATGCCTGAACGGAATCTGGTATCATGGAAGGCTATGATAGTGGGTTATGCAAGGAACGGTCACTGTCAAGAGGCTTTGAAGCTCATGTATCGAATGCAAGCAGAGGGTTTTCAGCTGGATGATTACATCCTTGCTACTGTTCTCACTGCATGTGGAGATCTTGAGTGGGATATGGATCCTTCATTTGTGTGTAACCTGCGGTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

480

Amino Acids

53.49

Weight (kDa)

6.03

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 72	3.2e-07	PPR repeat family
PPR_2	PF13041	113 - 159	7e-13	PPR repeat family
PPR	PF01535	115 - 145	1.7e-07	PPR repeat
PPR_2	PF13041	213 - 260	2.6e-11	PPR repeat family
PPR	PF01535	216 - 246	2.6e-08	PPR repeat
PPR_2	PF13041	314 - 363	1.6e-13	PPR repeat family
PPR_3	PF13812	315 - 362	3.8e-08	Pentatricopeptide repeat domain
PPR	PF01535	317 - 347	2.1e-07	PPR repeat
PPR	PF01535	418 - 448	8.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	1437
AccB1I	GGYRCC	1 cut(s)	518
AciI	CCGC	4 cut(s)	87, 459, 477, 1432
AclWI	GGATC	2 cut(s)	1403, 1416
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	2 cut(s)	104, 868
AfeI	AGCGCT	2 cut(s)	295, 1171
AflIII	ACRYGT	2 cut(s)	739, 1182
AgsI	TTSAA	8 cut(s)	109, 170, 202, 602, 1018, 1075, 1220, 1312
AjnI	CCWGG	1 cut(s)	1436
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	131, 232, 776, 1004, 1315, 1348
AluI	AGCT	6 cut(s)	131, 232, 776, 1004, 1315, 1348
Alw21I	GWGCWC	2 cut(s)	234, 982
Alw26I	GTCTC	3 cut(s)	499, 692, 955
Alw44I	GTGCAC	1 cut(s)	978
AlwI	GGATC	2 cut(s)	1403, 1416
Ama87I	CYCGRG	2 cut(s)	233, 607
Aor51HI	AGCGCT	2 cut(s)	295, 1171
ApaLI	GTGCAC	1 cut(s)	978
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	1098
AspLEI	GCGC	3 cut(s)	296, 316, 1172
AspS9I	GGNCC	2 cut(s)	84, 1434
AsuHPI	GGTGA	3 cut(s)	158, 491, 789
AvaI	CYCGRG	2 cut(s)	233, 607
AvaII	GGWCC	2 cut(s)	84, 1434
BaeGI	GKGCMC	1 cut(s)	982
BamHI	GGATCC	1 cut(s)	1408
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BauI	CACGAG	1 cut(s)	952
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	234, 982
BccI	CCATC	4 cut(s)	422, 617, 971, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	1438
BcoDI	GTCTC	3 cut(s)	499, 692, 955
BfaI	CTAG	2 cut(s)	860, 872
BfoI	RGCGCY	2 cut(s)	297, 1173
BfuAI	ACCTGC	1 cut(s)	1437
BglII	AGATCT	1 cut(s)	1390
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	1438
Bme18I	GGWCC	2 cut(s)	84, 1434
BmeT110I	CYCGRG	2 cut(s)	233, 607
BmgT120I	GGNCC	2 cut(s)	84, 1434
BmiI	GGNNCC	3 cut(s)	520, 1044, 1410
BmrFI	CCNGG	1 cut(s)	1438
BmsI	GCATC	1 cut(s)	774
BoxI	GACNNNNGTC	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpuEI	CTTGAG	2 cut(s)	452, 1415
BsaBI	GATNNNNATC	1 cut(s)	1407
BsaI	GGTCTC	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bse3DI	GCAATG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	1407
BseBI	CCWGG	1 cut(s)	1438
BseGI	GGATG	5 cut(s)	127, 343, 765, 1357, 1359
BseJI	GATNNNNATC	1 cut(s)	1407
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	703, 952
BseRI	GAGGAG	1 cut(s)	1114
BseSI	GKGCMC	1 cut(s)	982
BsgI	GTGCAG	1 cut(s)	1088
Bsh1285I	CGRYCG	1 cut(s)	843
BshNI	GGYRCC	1 cut(s)	518
BsiEI	CGRYCG	1 cut(s)	843
BsiHKAI	GWGCWC	2 cut(s)	234, 982
BsiHKCI	CYCGRG	2 cut(s)	233, 607
BsmAI	GTCTC	3 cut(s)	499, 692, 955
BsmI	GAATGC	1 cut(s)	1332
Bso31I	GGTCTC	1 cut(s)	692
BsoBI	CYCGRG	2 cut(s)	233, 607
Bsp1286I	GDGCHC	2 cut(s)	234, 982
Bsp143I	GATC	2 cut(s)	1390, 1408
BspACI	CCGC	4 cut(s)	87, 459, 477, 1432
BspCNI	CTCAG	2 cut(s)	702, 951
BspLI	GGNNCC	3 cut(s)	520, 1044, 1410
BspMI	ACCTGC	1 cut(s)	1437
BspPI	GGATC	2 cut(s)	1403, 1416
BspT107I	GGYRCC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	323
BssMI	GATC	2 cut(s)	1390, 1408
BssSI	CACGAG	1 cut(s)	952
Bst2BI	CACGAG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	1438
Bst4CI	ACNGT	6 cut(s)	454, 510, 646, 1292, 1298, 1372
Bst6I	CTCTTC	2 cut(s)	477, 719
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	40, 475, 1235, 1332
BstDEI	CTNAG	3 cut(s)	689, 770, 938
BstF5I	GGATG	5 cut(s)	127, 343, 765, 1357, 1359
BstH2I	RGCGCY	2 cut(s)	297, 1173
BstHHI	GCGC	3 cut(s)	296, 316, 1172
BstKTI	GATC	2 cut(s)	1393, 1411
BstMAI	GTCTC	3 cut(s)	499, 692, 955
BstMBI	GATC	2 cut(s)	1390, 1408
BstMCI	CGRYCG	1 cut(s)	843
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 412, 674, 1076
BstNI	CCWGG	1 cut(s)	1438
BstNSI	RCATGY	5 cut(s)	743, 1083, 1186, 1237, 1386
BstPAI	GACNNNNGTC	1 cut(s)	994
BstSCI	CCNGG	1 cut(s)	1436
BstSLI	GKGCMC	1 cut(s)	982
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	2 cut(s)	1390, 1408
BstYI	RGATCY	2 cut(s)	1390, 1408
BtsCI	GGATG	5 cut(s)	127, 343, 765, 1357, 1359
BtsI	GCAGTG	1 cut(s)	1377
BtsIMutI	CAGTG	2 cut(s)	1294, 1377
BveI	ACCTGC	1 cut(s)	1437
Cac8I	GCNNGC	4 cut(s)	40, 475, 1235, 1332
CfoI	GCGC	3 cut(s)	296, 316, 1172
Cfr13I	GGNCC	2 cut(s)	84, 1434
Csp6I	GTAC	2 cut(s)	103, 867
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviQI	GTAC	2 cut(s)	103, 867
DdeI	CTNAG	3 cut(s)	689, 770, 938
DpnI	GATC	2 cut(s)	1392, 1410
DpnII	GATC	2 cut(s)	1390, 1408
Eam1104I	CTCTTC	2 cut(s)	477, 719
EarI	CTCTTC	2 cut(s)	477, 719
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	84, 1434
Eco47III	AGCGCT	2 cut(s)	295, 1171
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	2 cut(s)	233, 607
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	1436
EcoT22I	ATGCAT	1 cut(s)	1054
EcoT38I	GRGCYC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	704
FokI	GGATG	5 cut(s)	134, 350, 752, 1346, 1364
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	860, 872
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	3 cut(s)	295, 315, 1171
HaeII	RGCGCY	2 cut(s)	297, 1173
HhaI	GCGC	3 cut(s)	296, 316, 1172
Hin6I	GCGC	3 cut(s)	294, 314, 1170
HinP1I	GCGC	3 cut(s)	294, 314, 1170
HincII	GTYRAC	2 cut(s)	289, 745
HindII	GTYRAC	2 cut(s)	289, 745
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	5 cut(s)	166, 605, 995, 1117, 1246
HphI	GGTGA	3 cut(s)	158, 491, 789
Hpy166II	GTNNAC	6 cut(s)	289, 450, 745, 817, 957, 980
Hpy188I	TCNGA	3 cut(s)	441, 941, 1000
Hpy188III	TCNNGA	4 cut(s)	235, 609, 1301, 1394
Hpy8I	GTNNAC	6 cut(s)	289, 450, 745, 817, 957, 980
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	481, 676, 1255, 1422
HpyCH4III	ACNGT	6 cut(s)	454, 510, 646, 1292, 1298, 1372
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 412, 674, 1076
HpyF3I	CTNAG	3 cut(s)	689, 770, 938
HspAI	GCGC	3 cut(s)	294, 314, 1170
Kzo9I	GATC	2 cut(s)	1390, 1408
LmnI	GCTCC	1 cut(s)	1167
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	2 cut(s)	860, 872
MaeIII	GTNAC	6 cut(s)	275, 510, 646, 1204, 1292, 1424
MalI	GATC	2 cut(s)	1392, 1410
MboI	GATC	2 cut(s)	1390, 1408
MboII	GAAGA	5 cut(s)	494, 541, 544, 614, 736
MfeI	CAATTG	1 cut(s)	1112
MflI	RGATCY	2 cut(s)	1390, 1408
MhlI	GDGCHC	2 cut(s)	234, 982
MluCI	AATT	2 cut(s)	202, 1112
MlyI	GAGTC	2 cut(s)	599, 1004
MmeI	TCCRAC	4 cut(s)	99, 201, 329, 949
Mph1103I	ATGCAT	1 cut(s)	1054
MroXI	GAANNNNTTC	1 cut(s)	1098
MseI	TTAA	4 cut(s)	96, 303, 422, 494
MslI	CAYNNNNRTG	2 cut(s)	336, 1420
MspA1I	CMGCKG	1 cut(s)	1348
MspR9I	CCNGG	1 cut(s)	1438
MunI	CAATTG	1 cut(s)	1112
Mva1269I	GAATGC	1 cut(s)	1332
MvaI	CCWGG	1 cut(s)	1438
MwoI	GCNNNNNNNGC	4 cut(s)	238, 412, 674, 1076
NdeI	CATATG	1 cut(s)	704
NdeII	GATC	2 cut(s)	1390, 1408
NlaIV	GGNNCC	3 cut(s)	520, 1044, 1410
NmuCI	GTSAC	1 cut(s)	1292
NsbI	TGCGCA	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	1054
NspI	RCATGY	5 cut(s)	743, 1083, 1186, 1237, 1386
PaeI	GCATGC	1 cut(s)	1237
PaeR7I	CTCGAG	1 cut(s)	607
PciI	ACATGT	2 cut(s)	739, 1182
PctI	GAATGC	1 cut(s)	1332
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	3 cut(s)	166, 1117, 1246
PleI	GAGTC	2 cut(s)	599, 1003
PpsI	GAGTC	2 cut(s)	599, 1003
PscI	ACATGT	2 cut(s)	739, 1182
PshAI	GACNNNNGTC	1 cut(s)	994
PshBI	ATTAAT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	1436
PspGI	CCWGG	1 cut(s)	1436
PspN4I	GGNNCC	3 cut(s)	520, 1044, 1410
PspPI	GGNCC	2 cut(s)	84, 1434
PsuI	RGATCY	2 cut(s)	1390, 1408
PvuII	CAGCTG	1 cut(s)	1348
RsaI	GTAC	2 cut(s)	104, 868
RsaNI	GTAC	2 cut(s)	103, 867
RseI	CAYNNNNRTG	2 cut(s)	336, 1420
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	96, 303, 422, 494
Sau3AI	GATC	2 cut(s)	1390, 1408
Sau96I	GGNCC	2 cut(s)	84, 1434
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	2 cut(s)	599, 1004
ScrFI	CCNGG	1 cut(s)	1438
SduI	GDGCHC	2 cut(s)	234, 982
SfaNI	GCATC	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	84, 1434
SlaI	CTCGAG	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	336, 1420
SmlI	CTYRAG	3 cut(s)	467, 607, 1394
SmoI	CTYRAG	3 cut(s)	467, 607, 1394
SphI	GCATGC	1 cut(s)	1237
Sse9I	AATT	2 cut(s)	202, 1112
SsiI	CCGC	4 cut(s)	87, 459, 477, 1432
SspMI	CTAG	2 cut(s)	860, 872
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	1436
TaaI	ACNGT	6 cut(s)	454, 510, 646, 1292, 1298, 1372
TaqI	TCGA	5 cut(s)	51, 608, 715, 843, 1324
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	2 cut(s)	202, 1112
TatI	WGTACW	1 cut(s)	866
TfiI	GAWTC	3 cut(s)	166, 1117, 1246
Tru1I	TTAA	4 cut(s)	96, 303, 422, 494
Tru9I	TTAA	4 cut(s)	96, 303, 422, 494
TscAI	CASTG	2 cut(s)	1301, 1384
TseFI	GTSAC	1 cut(s)	1292
Tsp45I	GTSAC	1 cut(s)	1292
TspDTI	ATGAA	4 cut(s)	141, 737, 1053, 1404
TspGWI	ACGGA	2 cut(s)	1223, 1258
TspRI	CASTG	2 cut(s)	1301, 1384
VneI	GTGCAC	1 cut(s)	978
VpaK11BI	GGWCC	2 cut(s)	84, 1434
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	5 cut(s)	743, 1083, 1186, 1237, 1386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	568, 1159
XhoI	CTCGAG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	860, 872
ZrmI	AGTACT	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.