Prupe.1G508700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
41942403 .. 41945753
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G508700.1

Sequence Viewer

Length: 1845 bp
ATGCTTTCGCCGACTCTCTTGCCACCACGTATTGGCGTCAATCTTTATCAAACACCTTCTCTGCTCTCCATTCAATCACCAATACAGAGAAAGCATTCAAATTCAAAGACCAGAAATCGTAAAACCCCCACGAATTTTCGTTGTTTTTATTGCGAAAACCCATCTTCTACTTACGACTTTGAGAATTTAAGCTCCCAAGAAAACCCAGATGCCGAATTCTCTGATACTCGGTCACTGAGCCAAAGCTCCAGACCCTATTTGCTTGCTCTTTGGCTCCGCTCATGTCGTAGTCTAAATGAAGTGAGAAGATTACATGCAGTTGTTTTGAGGTGTTTAGCGAATCCTGTTACGTATGTTTTTAATAATTTGATTTGTGCTTATATAGTGTTTGGGAAGTTAGTCGATGCCCGCAAAGTGCTTGACAAAATGACTGTTAGGAATGTGGTTTCTTGGACCGCCATTATTAATGGCTACTTGAACTTCGGTTTGGATGATGAAGCTTTGGGTTTGTTTAGTTATGCTATTAATGAGGGGGTTCAACCGAACGGTAATATGTTTGTGTGTGTCTTGAATTTGTGTAGTAAGAGGGTGGATTATGAGCTTGGGAGGCAAGTCCATGGTGGTGTCTTGAAGGGTGGTTGGAGCAACTTGATTGTTGACAGCGCCGTTGTTAAATTATATGCGCAATGTGGAGAGCTGTCAAGTGCTTACCGCGCATTTGATCAGATGCCAAAGTCGGATGTAGTTTGTTGGACAACTATGATAACTGCTTGTTCCCAACAAGGGCATGGACAGGAGGCTTTTTCACTGTTCTCGCAAATGTTAAGTGAGGGGTTTTCGCCTAATGAGTTTACGGTGTGTGGTGTTCTCAAGGCTTGTGGGGAAGAGAAGGAGTTAAGATTTGGGAGGCAATTACATGGTGCCATAGTTAAGAAGATTTACAAGAATGATGTTTTTATAGAAACTTCTCTAGTTGATATGTATGCAAAATGCGGGGAGATGATAGACTCAAGAACCGTATTTGATGGAATGAGGAACCGAAATACAGTTACATGGACATCTATTATAGCAGGGTATGCTCGGAAGGGCTTCAGTGAGGAGGCTATATGCCTCTTTCAAGTAATGAAGAGGCGAAATATATTTGTCAACAACTTGACCATTGTAAGCATCCTCAGAGCATGTGGCTCAATGAGGGATTCGCTGATGGGGAGGGAGGTTCATGCACAGATAGTAAAGAACTCAACTGAAACCAATTCACACCTAGGAAGTACTTTAGTGTGGTTCTACTGTAGGTGTGGGGAGTACTCTAATGCTACAAAGGTCCTCCAACAAATGCCTCTAAGAGATGTTGTCTCATGGACAGCCATCATTTCTGGCTGTGCACATCTTGGGTTTGAGTCTGAAGCTCTTGAATTCTTGAATGAAATGATGGAGGATGGGGTGGAGCCCAATGCATTTACTTACTCATCCGCTCTGAAAGCATGCGCCCAGCTGGAAACCGTTCTGCACGGGAAATTGATTCACTCCTCTGCAAATAAAAGTGCTGCCATGTCTAATGTTTTTGTGGGTAGCGCTTTGATTTCTATGTATGCAAAATGTGGCTATGTAACGGAGGCATTTCAAGTTTTTGACAGCATGCCAGAACGGAATTTGGTTTCTTGGAAGGCTATGATAGTGGGTTATGCAAAGAATGGTCTCTGCCAAGAGGCTATGAAGCTCATGTATCGGATGCGAACAGAGGGTTTTGAGGTGGATGATTACATCCTTGCCACTGTTCTTACTGCATGTGGAGAACTCGGATGGGAGATGGACCCTTCATGTGAGTGTAGCTTGCAGTCCAGTTGA

Protein Analysis

615

Amino Acids

68.64

Weight (kDa)

7.4

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013463)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 2 cut(s) 279, 1472
AccII CGCG 1 cut(s) 714
AciI CCGC 6 cut(s) 277, 409, 456, 712, 993, 1470
AcsI RAATTY 7 cut(s) 100, 133, 184, 215, 571, 1412, 1648
AcuI CTGAAG 2 cut(s) 1075, 1422
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 1270, 1304
AfeI AGCGCT 1 cut(s) 1573
AfiI CCNNNNNNNGG 2 cut(s) 32, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 9 cut(s) 192, 246, 500, 601, 697, 1406, 1492, 1717, 1830
AluI AGCT 9 cut(s) 192, 246, 500, 601, 697, 1406, 1492, 1717, 1830
Alw21I GWGCWC 1 cut(s) 1384
Alw26I GTCTC 2 cut(s) 1357, 1700
Alw44I GTGCAC 1 cut(s) 1380
Aor51HI AGCGCT 1 cut(s) 1573
ApaLI GTGCAC 1 cut(s) 1380
ApeKI GCWGC 1 cut(s) 1544
ApoI RAATTY 7 cut(s) 100, 133, 184, 215, 571, 1412, 1648
AseI ATTAAT 2 cut(s) 465, 525
Asp700I GAANNNNTTC 3 cut(s) 94, 1088, 1500
AspA2I CCTAGG 1 cut(s) 1261
AspLEI GCGC 5 cut(s) 665, 685, 716, 1487, 1574
AspS9I GGNCC 3 cut(s) 453, 1321, 1810
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 3 cut(s) 453, 1321, 1810
AvrII CCTAGG 1 cut(s) 1261
BaeGI GKGCMC 1 cut(s) 1384
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 1449
Bbv12I GWGCWC 1 cut(s) 1384
BbvI GCAGC 1 cut(s) 1531
BccI CCATC 8 cut(s) 169, 1019, 1198, 1373, 1423, 1430, 1794, 1801
BceAI ACGGC 1 cut(s) 650
BcgI CGANNNNNNTGC 1 cut(s) 35
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 1357, 1700
BfaI CTAG 2 cut(s) 971, 1262
BfmI CTRYAG 1 cut(s) 1288
BfoI RGCGCY 2 cut(s) 666, 1575
BisI GCNGC 1 cut(s) 1545
BlnI CCTAGG 1 cut(s) 1261
BlsI GCNGC 1 cut(s) 1546
BmcAI AGTACT 2 cut(s) 1270, 1304
Bme18I GGWCC 3 cut(s) 453, 1321, 1810
BmgT120I GGNCC 3 cut(s) 453, 1321, 1810
BmiI GGNNCC 5 cut(s) 275, 922, 1037, 1446, 1812
BmsI GCATC 5 cut(s) 199, 394, 717, 1176, 1719
BpmI CTGGAG 1 cut(s) 232
BpuEI CTTGAG 2 cut(s) 854, 994
BsaAI YACGTR 2 cut(s) 29, 351
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 1700
BsaJI CCNNGG 2 cut(s) 616, 1261
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 783
Bse1I ACTGG 1 cut(s) 1839
Bse3DI GCAATG 1 cut(s) 692
BseDI CCNNGG 2 cut(s) 616, 1261
BseGI GGATG 9 cut(s) 496, 745, 1167, 1441, 1466, 1734, 1759, 1761, 1805
BseLI CCNNNNNNNGG 2 cut(s) 32, 783
BseMI GCAATG 1 cut(s) 692
BseMII CTCAG 2 cut(s) 227, 1186
BseNI ACTGG 1 cut(s) 1839
BseRI GAGGAG 2 cut(s) 1112, 1516
BseSI GKGCMC 1 cut(s) 1384
BseXI GCAGC 1 cut(s) 1531
BseYI CCCAGC 1 cut(s) 1488
BsgI GTGCAG 1 cut(s) 1490
Bsh1236I CGCG 1 cut(s) 714
BshNI GGYRCC 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 1384
BslI CCNNNNNNNGG 2 cut(s) 32, 783
BsmAI GTCTC 2 cut(s) 1357, 1700
BsmI GAATGC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 1700
Bsp1286I GDGCHC 2 cut(s) 1384, 1449
Bsp143I GATC 1 cut(s) 721
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 6 cut(s) 277, 409, 456, 712, 993, 1470
BspCNI CTCAG 2 cut(s) 228, 1185
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 275, 922, 1037, 1446, 1812
BspT107I GGYRCC 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 1700
BsrBI CCGCTC 2 cut(s) 279, 1472
BsrDI GCAATG 1 cut(s) 692
BsrI ACTGG 1 cut(s) 1839
BssECI CCNNGG 2 cut(s) 616, 1261
BssMI GATC 1 cut(s) 721
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 616, 1261
Bst4CI ACNGT 9 cut(s) 433, 548, 810, 856, 1018, 1048, 1289, 1501, 1774
Bst6I CTCTTC 2 cut(s) 879, 1121
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstBAI YACGTR 2 cut(s) 29, 351
BstC8I GCNNGC 5 cut(s) 264, 409, 1483, 1637, 1832
BstDEI CTNAG 3 cut(s) 236, 1172, 1340
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 9 cut(s) 496, 745, 1167, 1441, 1466, 1734, 1759, 1761, 1805
BstFNI CGCG 1 cut(s) 714
BstH2I RGCGCY 2 cut(s) 666, 1575
BstHHI GCGC 5 cut(s) 665, 685, 716, 1487, 1574
BstKTI GATC 1 cut(s) 724
BstMAI GTCTC 2 cut(s) 1357, 1700
BstMBI GATC 1 cut(s) 721
BstMWI GCNNNNNNNGC 4 cut(s) 607, 713, 1076, 1478
BstNSI RCATGY 5 cut(s) 317, 1182, 1485, 1639, 1788
BstSFI CTRYAG 1 cut(s) 1288
BstSLI GKGCMC 1 cut(s) 1384
BstSNI TACGTA 1 cut(s) 351
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 1 cut(s) 1531
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 9 cut(s) 496, 745, 1167, 1441, 1466, 1734, 1759, 1761, 1805
BtsIMutI CAGTG 4 cut(s) 233, 806, 1099, 1770
Cac8I GCNNGC 5 cut(s) 264, 409, 1483, 1637, 1832
CfoI GCGC 5 cut(s) 665, 685, 716, 1487, 1574
Cfr13I GGNCC 3 cut(s) 453, 1321, 1810
CseI GACGC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 1269, 1303
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviQI GTAC 2 cut(s) 1269, 1303
DdeI CTNAG 3 cut(s) 236, 1172, 1340
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 879, 1121
EarI CTCTTC 2 cut(s) 879, 1121
Eco105I TACGTA 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 616, 1261
Eco24I GRGCYC 1 cut(s) 1449
Eco31I GGTCTC 1 cut(s) 1700
Eco47I GGWCC 3 cut(s) 453, 1321, 1810
Eco47III AGCGCT 1 cut(s) 1573
Eco57I CTGAAG 2 cut(s) 1075, 1422
EcoO109I RGGNCCY 1 cut(s) 1321
EcoRI GAATTC 2 cut(s) 215, 1412
EcoT14I CCWWGG 2 cut(s) 616, 1261
EcoT22I ATGCAT 1 cut(s) 1456
EcoT38I GRGCYC 1 cut(s) 1449
ErhI CCWWGG 2 cut(s) 616, 1261
FauI CCCGC 2 cut(s) 416, 986
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 1 cut(s) 1545
FokI GGATG 9 cut(s) 503, 752, 1154, 1448, 1453, 1741, 1748, 1766, 1812
FriOI GRGCYC 1 cut(s) 1449
Fsp4HI GCNGC 1 cut(s) 1545
FspBI CTAG 2 cut(s) 971, 1262
FspI TGCGCA 1 cut(s) 684
GlaI GCGC 5 cut(s) 664, 684, 715, 1486, 1573
GluI GCNGC 1 cut(s) 1545
GsaI CCCAGC 1 cut(s) 1492
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 2 cut(s) 666, 1575
HgaI GACGC 1 cut(s) 25
HhaI GCGC 5 cut(s) 665, 685, 716, 1487, 1574
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 5 cut(s) 663, 683, 714, 1485, 1572
HinP1I GCGC 5 cut(s) 663, 683, 714, 1485, 1572
HincII GTYRAC 2 cut(s) 658, 1147
HindII GTYRAC 2 cut(s) 658, 1147
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 6 cut(s) 13, 340, 1007, 1196, 1397, 1519
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 4 cut(s) 658, 852, 1147, 1382
Hpy188I TCNGA 9 cut(s) 223, 726, 739, 1083, 1175, 1402, 1476, 1728, 1799
Hpy188III TCNNGA 6 cut(s) 249, 568, 628, 1011, 1409, 1417
Hpy8I GTNNAC 4 cut(s) 658, 852, 1147, 1382
HpyAV CCTTC 6 cut(s) 66, 625, 883, 1078, 1657, 1824
HpyCH4III ACNGT 9 cut(s) 433, 548, 810, 856, 1018, 1048, 1289, 1501, 1774
HpyCH4IV ACGT 2 cut(s) 28, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 607, 713, 1076, 1478
HpyF3I CTNAG 3 cut(s) 236, 1172, 1340
HpySE526I ACGT 2 cut(s) 28, 350
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 5 cut(s) 663, 683, 714, 1485, 1572
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 1 cut(s) 721
LmnI GCTCC 5 cut(s) 197, 251, 279, 642, 1444
Lsp1109I GCAGC 1 cut(s) 1531
LweI GCATC 5 cut(s) 199, 394, 717, 1176, 1719
MaeI CTAG 2 cut(s) 971, 1262
MaeII ACGT 2 cut(s) 28, 350
MaeIII GTNAC 4 cut(s) 231, 346, 1048, 1606
MalI GATC 1 cut(s) 723
MbiI CCGCTC 2 cut(s) 279, 1472
MboI GATC 1 cut(s) 721
MboII GAAGA 5 cut(s) 156, 318, 896, 946, 1138
MhlI GDGCHC 2 cut(s) 1384, 1449
MlyI GAGTC 3 cut(s) 7, 1001, 1406
MmeI TCCRAC 4 cut(s) 620, 717, 731, 1351
Mph1103I ATGCAT 1 cut(s) 1456
MroXI GAANNNNTTC 3 cut(s) 94, 1088, 1500
MseI TTAA 8 cut(s) 188, 360, 465, 525, 672, 824, 896, 930
MslI CAYNNNNRTG 2 cut(s) 621, 1822
MspA1I CMGCKG 1 cut(s) 1492
Mva1269I GAATGC 1 cut(s) 94
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 4 cut(s) 607, 713, 1076, 1478
NcoI CCATGG 1 cut(s) 616
NdeII GATC 1 cut(s) 721
NlaIV GGNNCC 5 cut(s) 275, 922, 1037, 1446, 1812
NmuCI GTSAC 1 cut(s) 231
NsbI TGCGCA 1 cut(s) 684
NsiI ATGCAT 1 cut(s) 1456
NspI RCATGY 5 cut(s) 317, 1182, 1485, 1639, 1788
PaeI GCATGC 2 cut(s) 1485, 1639
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 3 cut(s) 94, 1088, 1500
PfeI GAWTC 3 cut(s) 340, 1196, 1519
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 1546
PleI GAGTC 3 cut(s) 7, 1001, 1405
PpsI GAGTC 3 cut(s) 7, 1001, 1405
Ppu21I YACGTR 2 cut(s) 29, 351
PpuMI RGGWCCY 1 cut(s) 1321
PshBI ATTAAT 2 cut(s) 465, 525
Psp5II RGGWCCY 1 cut(s) 1321
PspFI CCCAGC 1 cut(s) 1488
PspN4I GGNNCC 5 cut(s) 275, 922, 1037, 1446, 1812
PspPI GGNCC 3 cut(s) 453, 1321, 1810
PspPPI RGGWCCY 1 cut(s) 1321
PvuII CAGCTG 1 cut(s) 1492
RsaI GTAC 2 cut(s) 1270, 1304
RsaNI GTAC 2 cut(s) 1269, 1303
RseI CAYNNNNRTG 2 cut(s) 621, 1822
SaqAI TTAA 8 cut(s) 188, 360, 465, 525, 672, 824, 896, 930
SatI GCNGC 1 cut(s) 1545
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 3 cut(s) 453, 1321, 1810
ScaI AGTACT 2 cut(s) 1270, 1304
SchI GAGTC 3 cut(s) 7, 1001, 1406
SduI GDGCHC 2 cut(s) 1384, 1449
SfaNI GCATC 5 cut(s) 199, 394, 717, 1176, 1719
SfcI CTRYAG 1 cut(s) 1288
SinI GGWCC 3 cut(s) 453, 1321, 1810
SmiMI CAYNNNNRTG 2 cut(s) 621, 1822
SmlI CTYRAG 2 cut(s) 869, 1009
SmoI CTYRAG 2 cut(s) 869, 1009
SnaBI TACGTA 1 cut(s) 351
SphI GCATGC 2 cut(s) 1485, 1639
SsiI CCGC 6 cut(s) 277, 409, 456, 712, 993, 1470
SspMI CTAG 2 cut(s) 971, 1262
StyI CCWWGG 2 cut(s) 616, 1261
TaaI ACNGT 9 cut(s) 433, 548, 810, 856, 1018, 1048, 1289, 1501, 1774
TaiI ACGT 2 cut(s) 31, 353
TaqI TCGA 1 cut(s) 402
TaqII GACCGA 1 cut(s) 219
TatI WGTACW 2 cut(s) 1268, 1302
TfiI GAWTC 3 cut(s) 340, 1196, 1519
Tru1I TTAA 8 cut(s) 188, 360, 465, 525, 672, 824, 896, 930
Tru9I TTAA 8 cut(s) 188, 360, 465, 525, 672, 824, 896, 930
TscAI CASTG 4 cut(s) 240, 813, 1099, 1777
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 1 cut(s) 1544
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 7 cut(s) 312, 510, 1139, 1208, 1437, 1727, 1806
TspGWI ACGGA 2 cut(s) 1625, 1660
TspRI CASTG 4 cut(s) 240, 813, 1099, 1777
Van91I CCANNNNNTGG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 1380
VpaK11BI GGWCC 3 cut(s) 453, 1321, 1810
VspI ATTAAT 2 cut(s) 465, 525
XapI RAATTY 7 cut(s) 100, 133, 184, 215, 571, 1412, 1648
XceI RCATGY 5 cut(s) 317, 1182, 1485, 1639, 1788
XcmI CCANNNNNNNNNTGG 1 cut(s) 785
XmaJI CCTAGG 1 cut(s) 1261
XmnI GAANNNNTTC 3 cut(s) 94, 1088, 1500
XspI CTAG 2 cut(s) 971, 1262
ZrmI AGTACT 2 cut(s) 1270, 1304
Zsp2I ATGCAT 1 cut(s) 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.