Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Reverse (-)

67719096 .. 67721579

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG473200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGTGTGCGTATTTGGGTTTTGGGAAGTTAGTCCATGCACGCAAGGTGTTCGACGAAATGGCTGTGAGAAATGTGGTTTCTTGGACCGCTATTATTAATGGGTACTTGAACTTTGGGTTGGATGATGAAGCTTTGGGGTTGTTTAGTGAGGCTATTGATGAGGGGATTCAACCGAACGGGAATATGTTTGTGTGTGTGTTGAATTTGTGTTGTAAGAGGTTGGATTATGAGCTCGGGAGGCAAATCCATGCTGGGATTGTAAAAGGTGGGTGGAGTAACATGATTGTTGACAGCGCTATTGTTAAGTTGTATGCGCAATGTGGAGAGTTGTCAAGTGCTTTTCGCGCGTTTGATCAGATGCCAAAGTTGGATGTAGTTTGTTGGACAACTATGATAACTGCTTGTTCTCAACAGGGGCATGGGCAGGAGGCTTTCTCGCTGTTCTCGCAGATGTTAAGTGATGGGTTTTCTCCGAATGAGTTTACGGTGTGCGGTGTTCTCAAGGCTTGCGGTGAAGAGAAGGAGTTAAGGTTTGGGAGACAGTTACATGGTGCCATAGTGAAGAAGATTTACAAGAGTGATATTTTTGTAGCCACTTCTCTTGTGGATATGTATGCAAAGTGTGGGGAGATTGAAGACTCGAGAAATGTATTTGATGGAATGAGGAACAGAAACACAGTTACATGGACATCTATTATAGCAGGGTATGCAAGGAAGGGTCTCAGCGAGGAAGCCATATGCCTCTTTCGACTAATGAAGAGGCGAAACATACATGTCAACAACTTGACCATTGTAAGCATCCTCAGAGCTTGTGGATTGATTAGGTATTCACTGATGGGTAGGGAAGTTCACGCACAGATAATCAAACACTCGGTCGAAACAAACTTATATCTAGGAAGTACTCTAGTGTGGTTCTACTGCAAGTGTGGGGATTACTCTACTGCCACAAAAGTCCTCCAACAAATGCCTCTCAGAGATGTTGTCTCGTGGACTGCCATCATTTCTGGTTGTGCACATCTTGGACATGAGTCTGAAGCTATTGAGTTGTTGAAAGAAATGATGGAGGACGGGGTGGAACCCAATGCATTTACTTATTCATCTGCTTTGAAAGCATGTGCTAACTTGGAAACCATTCTGCACGGGCAATTGATTCACTCCTCTGCAAATAAAAGTCCAGCCATGTCCAATGTGTTTGTGGGGAGCGCTTTGATTTACATGTATGCAAAATGTGGCTATGTAACGGAGGCATTTCAAGTTTTTGACAGCATGCCTGAACGGAATCTGGTATCATGGAAGGCTATGATAGTGGGTTATGCAAGGAACGGTCACTGTCAAGAGGCTTTGAAGCTCATGTATCGAATGCAAGCAGAGGGTTTTCAGCTGGATGATTACATCCTTGCTACTGTTCTCACTGCATGTGGAGATCTTGAGTGGGATATGGATCCTTCATTTGTGTGTAGCCTGCGGTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

491

Amino Acids

54.78

Weight (kDa)

6.2

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 72	3.3e-07	PPR repeat family
PPR_2	PF13041	124 - 170	7.2e-13	PPR repeat family
PPR	PF01535	126 - 156	1.7e-07	PPR repeat
PPR_2	PF13041	224 - 271	2.7e-11	PPR repeat family
PPR	PF01535	227 - 257	2.7e-08	PPR repeat
PPR_2	PF13041	325 - 374	1.6e-13	PPR repeat family
PPR_3	PF13812	326 - 373	4e-08	Pentatricopeptide repeat domain
PPR	PF01535	328 - 358	2.1e-07	PPR repeat
PPR	PF01535	429 - 459	8.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	551
AccII	CGCG	2 cut(s)	345, 347
AciI	CCGC	4 cut(s)	87, 492, 510, 1465
AclWI	GGATC	2 cut(s)	1436, 1449
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	2 cut(s)	104, 901
AfeI	AGCGCT	2 cut(s)	295, 1204
AflIII	ACRYGT	2 cut(s)	772, 1215
AgsI	TTSAA	8 cut(s)	109, 170, 202, 635, 1051, 1108, 1253, 1345
AjnI	CCWGG	1 cut(s)	1469
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	131, 232, 809, 1037, 1348, 1381
AluI	AGCT	6 cut(s)	131, 232, 809, 1037, 1348, 1381
Alw21I	GWGCWC	2 cut(s)	234, 1015
Alw26I	GTCTC	3 cut(s)	532, 725, 988
Alw44I	GTGCAC	1 cut(s)	1011
AlwI	GGATC	2 cut(s)	1436, 1449
Ama87I	CYCGRG	2 cut(s)	233, 640
Aor51HI	AGCGCT	2 cut(s)	295, 1204
ApaLI	GTGCAC	1 cut(s)	1011
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	1131
AspLEI	GCGC	4 cut(s)	296, 316, 347, 1205
AspS9I	GGNCC	2 cut(s)	84, 1467
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	2 cut(s)	233, 640
AvaII	GGWCC	2 cut(s)	84, 1467
BaeGI	GKGCMC	1 cut(s)	1015
BamHI	GGATCC	1 cut(s)	1441
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BauI	CACGAG	1 cut(s)	985
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	2 cut(s)	234, 1015
BccI	CCATC	5 cut(s)	455, 650, 829, 1004, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	1471
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	3 cut(s)	532, 725, 988
BfaI	CTAG	2 cut(s)	893, 905
BfoI	RGCGCY	2 cut(s)	297, 1206
BglII	AGATCT	1 cut(s)	1423
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	1 cut(s)	1471
Bme18I	GGWCC	2 cut(s)	84, 1467
BmeT110I	CYCGRG	2 cut(s)	233, 640
BmgT120I	GGNCC	2 cut(s)	84, 1467
BmiI	GGNNCC	3 cut(s)	553, 1077, 1443
BmrFI	CCNGG	1 cut(s)	1471
BmsI	GCATC	2 cut(s)	348, 807
BoxI	GACNNNNGTC	1 cut(s)	1027
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpuEI	CTTGAG	2 cut(s)	485, 1448
BsaBI	GATNNNNATC	1 cut(s)	1440
BsaI	GGTCTC	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bse3DI	GCAATG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	1440
BseBI	CCWGG	1 cut(s)	1471
BseGI	GGATG	5 cut(s)	127, 376, 798, 1390, 1392
BseJI	GATNNNNATC	1 cut(s)	1440
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	3 cut(s)	736, 817, 985
BseRI	GAGGAG	1 cut(s)	1147
BseSI	GKGCMC	1 cut(s)	1015
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	1121
Bsh1236I	CGCG	2 cut(s)	345, 347
Bsh1285I	CGRYCG	1 cut(s)	876
BshNI	GGYRCC	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	876
BsiHKAI	GWGCWC	2 cut(s)	234, 1015
BsiHKCI	CYCGRG	2 cut(s)	233, 640
BsmAI	GTCTC	3 cut(s)	532, 725, 988
BsmI	GAATGC	1 cut(s)	1365
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	2 cut(s)	233, 640
Bsp1286I	GDGCHC	2 cut(s)	234, 1015
Bsp143I	GATC	3 cut(s)	352, 1423, 1441
BspACI	CCGC	4 cut(s)	87, 492, 510, 1465
BspCNI	CTCAG	3 cut(s)	735, 816, 984
BspFNI	CGCG	2 cut(s)	345, 347
BspLI	GGNNCC	3 cut(s)	553, 1077, 1443
BspPI	GGATC	2 cut(s)	1436, 1449
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	323
BssMI	GATC	3 cut(s)	352, 1423, 1441
BssSI	CACGAG	1 cut(s)	985
Bst2BI	CACGAG	1 cut(s)	985
Bst2UI	CCWGG	1 cut(s)	1471
Bst4CI	ACNGT	6 cut(s)	487, 543, 679, 1325, 1331, 1405
Bst6I	CTCTTC	2 cut(s)	510, 752
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	5 cut(s)	40, 508, 1268, 1365, 1463
BstDEI	CTNAG	3 cut(s)	722, 803, 971
BstF5I	GGATG	5 cut(s)	127, 376, 798, 1390, 1392
BstFNI	CGCG	2 cut(s)	345, 347
BstH2I	RGCGCY	2 cut(s)	297, 1206
BstHHI	GCGC	4 cut(s)	296, 316, 347, 1205
BstKTI	GATC	3 cut(s)	355, 1426, 1444
BstMAI	GTCTC	3 cut(s)	532, 725, 988
BstMBI	GATC	3 cut(s)	352, 1423, 1441
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 344, 445, 707, 1109
BstNI	CCWGG	1 cut(s)	1471
BstNSI	RCATGY	5 cut(s)	776, 1116, 1219, 1270, 1419
BstPAI	GACNNNNGTC	1 cut(s)	1027
BstSCI	CCNGG	1 cut(s)	1469
BstSLI	GKGCMC	1 cut(s)	1015
BstUI	CGCG	2 cut(s)	345, 347
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	1423, 1441
BstYI	RGATCY	2 cut(s)	1423, 1441
BtsCI	GGATG	5 cut(s)	127, 376, 798, 1390, 1392
BtsI	GCAGTG	1 cut(s)	1410
BtsIMutI	CAGTG	3 cut(s)	830, 1327, 1410
Cac8I	GCNNGC	5 cut(s)	40, 508, 1268, 1365, 1463
CfoI	GCGC	4 cut(s)	296, 316, 347, 1205
Cfr13I	GGNCC	2 cut(s)	84, 1467
Csp6I	GTAC	2 cut(s)	103, 900
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviQI	GTAC	2 cut(s)	103, 900
DdeI	CTNAG	3 cut(s)	722, 803, 971
DpnI	GATC	3 cut(s)	354, 1425, 1443
DpnII	GATC	3 cut(s)	352, 1423, 1441
Eam1104I	CTCTTC	2 cut(s)	510, 752
EarI	CTCTTC	2 cut(s)	510, 752
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	84, 1467
Eco47III	AGCGCT	2 cut(s)	295, 1204
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	2 cut(s)	233, 640
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	1469
EcoT22I	ATGCAT	1 cut(s)	1087
EcoT38I	GRGCYC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	737
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	5 cut(s)	134, 383, 785, 1379, 1397
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	893, 905
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	4 cut(s)	295, 315, 346, 1204
GsaI	CCCAGC	1 cut(s)	255
HaeII	RGCGCY	2 cut(s)	297, 1206
HhaI	GCGC	4 cut(s)	296, 316, 347, 1205
Hin6I	GCGC	4 cut(s)	294, 314, 345, 1203
HinP1I	GCGC	4 cut(s)	294, 314, 345, 1203
HincII	GTYRAC	2 cut(s)	289, 778
HindII	GTYRAC	2 cut(s)	289, 778
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	5 cut(s)	166, 638, 1028, 1150, 1279
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	6 cut(s)	289, 483, 778, 850, 990, 1013
Hpy188I	TCNGA	5 cut(s)	357, 474, 806, 974, 1033
Hpy188III	TCNNGA	4 cut(s)	235, 642, 1334, 1427
Hpy8I	GTNNAC	6 cut(s)	289, 483, 778, 850, 990, 1013
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	514, 709, 1288, 1455
HpyCH4III	ACNGT	6 cut(s)	487, 543, 679, 1325, 1331, 1405
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 344, 445, 707, 1109
HpyF3I	CTNAG	3 cut(s)	722, 803, 971
HspAI	GCGC	4 cut(s)	294, 314, 345, 1203
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	352, 1423, 1441
LmnI	GCTCC	1 cut(s)	1200
LweI	GCATC	2 cut(s)	348, 807
MaeI	CTAG	2 cut(s)	893, 905
MaeIII	GTNAC	5 cut(s)	275, 543, 679, 1237, 1325
MalI	GATC	3 cut(s)	354, 1425, 1443
MboI	GATC	3 cut(s)	352, 1423, 1441
MboII	GAAGA	5 cut(s)	527, 574, 577, 647, 769
MfeI	CAATTG	1 cut(s)	1145
MflI	RGATCY	2 cut(s)	1423, 1441
MhlI	GDGCHC	2 cut(s)	234, 1015
MluCI	AATT	2 cut(s)	202, 1145
MlyI	GAGTC	2 cut(s)	632, 1037
MmeI	TCCRAC	5 cut(s)	99, 201, 348, 362, 982
Mph1103I	ATGCAT	1 cut(s)	1087
MroXI	GAANNNNTTC	1 cut(s)	1131
MseI	TTAA	4 cut(s)	96, 303, 455, 527
MslI	CAYNNNNRTG	1 cut(s)	1453
MspA1I	CMGCKG	1 cut(s)	1381
MspR9I	CCNGG	1 cut(s)	1471
MunI	CAATTG	1 cut(s)	1145
Mva1269I	GAATGC	1 cut(s)	1365
MvaI	CCWGG	1 cut(s)	1471
MvnI	CGCG	2 cut(s)	345, 347
MwoI	GCNNNNNNNGC	5 cut(s)	238, 344, 445, 707, 1109
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	3 cut(s)	352, 1423, 1441
NlaIV	GGNNCC	3 cut(s)	553, 1077, 1443
NmuCI	GTSAC	1 cut(s)	1325
NsbI	TGCGCA	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	1087
NspI	RCATGY	5 cut(s)	776, 1116, 1219, 1270, 1419
PaeI	GCATGC	1 cut(s)	1270
PaeR7I	CTCGAG	1 cut(s)	640
PciI	ACATGT	2 cut(s)	772, 1215
PctI	GAATGC	1 cut(s)	1365
PdmI	GAANNNNTTC	1 cut(s)	1131
PfeI	GAWTC	3 cut(s)	166, 1150, 1279
PleI	GAGTC	2 cut(s)	632, 1036
PpsI	GAGTC	2 cut(s)	632, 1036
PscI	ACATGT	2 cut(s)	772, 1215
PshAI	GACNNNNGTC	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	1469
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	1469
PspN4I	GGNNCC	3 cut(s)	553, 1077, 1443
PspPI	GGNCC	2 cut(s)	84, 1467
PsuI	RGATCY	2 cut(s)	1423, 1441
PvuII	CAGCTG	1 cut(s)	1381
RsaI	GTAC	2 cut(s)	104, 901
RsaNI	GTAC	2 cut(s)	103, 900
RseI	CAYNNNNRTG	1 cut(s)	1453
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	96, 303, 455, 527
Sau3AI	GATC	3 cut(s)	352, 1423, 1441
Sau96I	GGNCC	2 cut(s)	84, 1467
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	2 cut(s)	632, 1037
ScrFI	CCNGG	1 cut(s)	1471
SduI	GDGCHC	2 cut(s)	234, 1015
SfaNI	GCATC	2 cut(s)	348, 807
Sfr274I	CTCGAG	1 cut(s)	640
SinI	GGWCC	2 cut(s)	84, 1467
SlaI	CTCGAG	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	1453
SmlI	CTYRAG	3 cut(s)	500, 640, 1427
SmoI	CTYRAG	3 cut(s)	500, 640, 1427
SphI	GCATGC	1 cut(s)	1270
Sse9I	AATT	2 cut(s)	202, 1145
SsiI	CCGC	4 cut(s)	87, 492, 510, 1465
SspMI	CTAG	2 cut(s)	893, 905
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	1469
TaaI	ACNGT	6 cut(s)	487, 543, 679, 1325, 1331, 1405
TaqI	TCGA	5 cut(s)	51, 641, 748, 876, 1357
TaqII	GACCGA	1 cut(s)	862
TasI	AATT	2 cut(s)	202, 1145
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	3 cut(s)	166, 1150, 1279
Tru1I	TTAA	4 cut(s)	96, 303, 455, 527
Tru9I	TTAA	4 cut(s)	96, 303, 455, 527
TscAI	CASTG	3 cut(s)	837, 1334, 1417
TseFI	GTSAC	1 cut(s)	1325
Tsp45I	GTSAC	1 cut(s)	1325
TspDTI	ATGAA	4 cut(s)	141, 770, 1086, 1437
TspGWI	ACGGA	2 cut(s)	1256, 1291
TspRI	CASTG	3 cut(s)	837, 1334, 1417
VneI	GTGCAC	1 cut(s)	1011
VpaK11BI	GGWCC	2 cut(s)	84, 1467
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	5 cut(s)	776, 1116, 1219, 1270, 1419
XcmI	CCANNNNNNNNNTGG	2 cut(s)	601, 1192
XhoI	CTCGAG	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	1131
XspI	CTAG	2 cut(s)	893, 905
ZrmI	AGTACT	1 cut(s)	901
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.