Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Forward (+)

3786259 .. 3789462

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGCTTTCGCCAACTTTTGTGCCACCACATATTGGCTTCAATCTCCATCCAATACCTTCCCTCTTCTCTATTCAACCACCAAAACCAATAAAGCATTCAAATTCAAGAACCATAAACAACAGAACCCCCACGAATTTTCGTTCTTCTTTTTCTGAAATCCCATCTGCTGCATACACTGTTCAAGATTTAAGCTCCCCAGAAAACCCAGATGCCGAATTCTCCAATACACGGTCACTGAGCCAGAGCTTAAGACCCTATCTGCTTGCGCTTTGGCTTCGCTCATGTCGTAGCCTAAAGGAAGTAAGAAGACTTCACGCGCTTATTTTGAGGTGTATAGGCAATCCTGTTACGTATGTTTTCAATAATTTGATGTGTGTGTATTTGGGTTTTGGGAAGTTAGTTCATGCACGCAAGGTGTTCGACGAAATGGCTGTGAGAAATGTGGTTTCTTGGACCGCTATTATTAATGGGTACTTGAGCTTTGGGTTGGATGATGAAGCTTTGGGGTTGTTTAGTGCGGCTATTGATGAGGGGATTCAACCGAACGGGAATATGTTTGTGTGTGTGTTGAATTTGTGTTGTAAGAGGTTGGATTATGAGCTCGGGAGGCAAATCCATGCAGGGATTCTAAAAGGTGGGTGGAGTAACATGATTGTTGACAGCGCTATTGTTAAGTTGTATGCGCAATGTGGAGAGTTGTCATGTGCTTTTCGCGCGTTTGATCAGATGCCGAAGTTGGATGTAGTTTGTTGGACAACTATGATAACTGCTTGTTCTCAACAGGGGCATGGGCAGGAGGCTTTCTCGCTGTTCTCGCAGATGTTAAGTGATGGGTTTTCTCCAAATGAGTTTACGGTGTGCGGTGTTCTCAAGGCTTGCGGCGAAGAGAAGGAGTTAAGGTTTGGGAGACAGTTACATGGTGCCATAGTCAAGAAGATTTACAAGAGTGATGTTTTTGTATCCACTTCTCTTGTGGATATGTATGCAAAGTGTGGGGAGATTGAAGACTCGAGAAATGTATTTGATGGAATGAGGAACAGAAACACAGTTACATGGACATCTATTATAGCAGGGTATGCAAGGAAGGGTCTCAGCGAGGAAGCCATATGCCTCTTTCGACTAATGAAGAGGCGAAACATACATGTCAACAACTTGACCATTGTAAGCATCCTCAGAGCTTGTGGATTGATTATGTATTCACCAATGGGTAGGGAAGTTCACGCACAGATAATCAGACACTCGGTCGAAACAAACTTATATCTAGGAAGTACTCTAGTGTGGTTCTACTGCAAGTGTGGGGATTACTCTACTGCCACAAAAGTCCTCCAACAAATGCCTCTCAGAGATGTTGTCTCGTGGACTGCCATCATTTCTGGTTGTGCACATCTTGGACATGAGTCTGAAGCTATTGAGTTGTTGAAAGAAATGATGGAGGACGGGGTGGAACCCAATGCATTTACTTATTCATCTGCTTTGAAAGCATGTGCTAACTTGGAAACCATTCTGCACGGGCAATTGATTCACTCCTCTGCAAATAAAAGTCCAGCCATGTCCAATGTGTTTGTGGGGAGCGCTTTGATTTACATGTATGCAAAATGTGGCTATGTAACGGAGGCATTTCAAGTTTTTGACAGCATGCCTGAACGGAATCTGGTATCATGGAAGGTTATGATAGTGGGTTATGCAAGGAACGGTCACTGTCAAGAGGCTTTGAAGCTCATGTATCGAATGCAAGCAGAGGGTTTTCAGCTGGATGATTACATCCTTGCTACTGTTCTCACTGCATGTGGAGATCTTGAGTGGGATATGGATCCTTCATTTGTGTGTAGCCTGCGGTCCAGACCACCTTCATCATCCTTTCACCACCGTCGCGCCATAGATCACCACCCCAGCCAAACAACGCCTTCTCCAGATCGGATCCAAGAAAACCAACCTAGATCGGGTTCGTCCAAGCACAGCCCAACCGCGCCACCACGACCATGGCACCCCCAAGCCGCCTCCGACCGCACAACCCCAGTCCCCTCCGCCGACCGGACCAACAAGGGACAAACTCAAACTCGGCAACCTCTGCGATCTCCCTCTTCCTCATCACATACCGCGTCTCAAAACCTCAACAAAATCGCAGTCATACACTCCTCCGGCGACAGTCGTACCCGCACCTTCGTCACCGTCCAACCTCTCTACAACGACAACCGCTTCTTCACGTACGCAGAGTTAATCTCCGCCGTCGATTCCCTCGCTTCGCAGCTCCGTCGCAATAACCTTGATTCAGCTTCATCAAAGCTTCAACCGAGAATTCTCGGCATATATATGCCGCCGTCGGTGGAATACATAGTCTCCGTGCTCTCGGTTTTGAGGTGCGGCGAGGCCTTTCTGCCTCTGGACCCGTCCTGGCCAAAACAGAGGCTGCTCTCCGTTGTTAATTTCTTCGGCCAATGTCGACCTAATAATCACCTGCACGACGCCGTTTGGATACGAATTGGACTCCAATTCACTCAAGCAGAGTTGCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

839

Amino Acids

93.72

Weight (kDa)

8.65

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	247 - 293	1.4e-12	PPR repeat family
PPR	PF01535	249 - 279	3.3e-07	PPR repeat
PPR_2	PF13041	347 - 394	5.3e-11	PPR repeat family
PPR	PF01535	350 - 380	5.1e-08	PPR repeat
PPR_2	PF13041	448 - 497	3.3e-13	PPR repeat family
PPR_3	PF13812	449 - 496	7.8e-08	Pentatricopeptide repeat domain
PPR	PF01535	451 - 481	4.1e-07	PPR repeat
PPR	PF01535	552 - 582	2.5e-06	PPR repeat
AMP-binding	PF00501	724 - 808	7.4e-09	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2463
Acc16I	TGCGCA	1 cut(s)	684
Acc36I	ACCTGC	1 cut(s)	2463
AccB1I	GGYRCC	2 cut(s)	920, 1983
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	2440
AccII	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
AclWI	GGATC	4 cut(s)	1805, 1818, 1912, 1925
AcoI	YGGCCR	2 cut(s)	2393, 2431
AcsI	RAATTY	5 cut(s)	100, 133, 215, 571, 2295
AcuI	CTGAAG	1 cut(s)	1422
AcyI	GRCGYC	1 cut(s)	2463
AfaI	GTAC	4 cut(s)	473, 1270, 2152, 2207
AfeI	AGCGCT	2 cut(s)	664, 1573
AfiI	CCNNNNNNNGG	4 cut(s)	32, 228, 1940, 2031
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	2 cut(s)	1141, 1584
AhdI	GACNNNNNGTC	1 cut(s)	1241
AjnI	CCWGG	1 cut(s)	2390
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
Alw21I	GWGCWC	3 cut(s)	603, 1384, 2346
Alw26I	GTCTC	5 cut(s)	901, 1094, 1357, 2106, 2341
Alw44I	GTGCAC	1 cut(s)	1380
AlwI	GGATC	4 cut(s)	1805, 1818, 1912, 1925
AlwNI	CAGNNNCTG	1 cut(s)	2407
Ama87I	CYCGRG	2 cut(s)	602, 1009
Aor51HI	AGCGCT	2 cut(s)	664, 1573
AoxI	GGCC	3 cut(s)	2367, 2393, 2431
ApaLI	GTGCAC	1 cut(s)	1380
ApeKI	GCWGC	3 cut(s)	167, 2245, 2407
ApoI	RAATTY	5 cut(s)	100, 133, 215, 571, 2295
ArsI	GACNNNNNNTTYG	2 cut(s)	2109, 2141
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	1500
AspLEI	GCGC	8 cut(s)	268, 319, 665, 685, 716, 1574, 1874, 1969
AspS9I	GGNCC	4 cut(s)	453, 1836, 2034, 2383
AsuHPI	GGTGA	5 cut(s)	1191, 1853, 1874, 2158, 2444
AvaI	CYCGRG	2 cut(s)	602, 1009
AvaII	GGWCC	4 cut(s)	453, 1836, 2034, 2383
BaeGI	GKGCMC	1 cut(s)	1384
BaeI	ACNNNNGTAYC	2 cut(s)	2134, 2167
BalI	TGGCCA	1 cut(s)	2395
BamHI	GGATCC	2 cut(s)	1810, 1917
BanI	GGYRCC	2 cut(s)	920, 1983
BanII	GRGCYC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	1354
BbsI	GAAGAC	2 cut(s)	313, 1011
Bbv12I	GWGCWC	3 cut(s)	603, 1384, 2346
BbvI	GCAGC	3 cut(s)	154, 2257, 2394
BccI	CCATC	6 cut(s)	54, 169, 824, 1019, 1373, 1423
BceAI	ACGGC	3 cut(s)	2210, 2302, 2450
BcgI	CGANNNNNNTGC	4 cut(s)	400, 434, 2234, 2268
BciT130I	CCWGG	1 cut(s)	2392
BciVI	GTATCC	2 cut(s)	970, 2466
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	5 cut(s)	901, 1094, 1357, 2106, 2341
BfaI	CTAG	3 cut(s)	1262, 1274, 1935
BfoI	RGCGCY	2 cut(s)	666, 1575
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	2463
BfuI	GTATCC	2 cut(s)	970, 2466
BglII	AGATCT	1 cut(s)	1792
BisI	GCNGC	8 cut(s)	168, 519, 880, 1995, 2246, 2315, 2362, 2408
BlsI	GCNGC	8 cut(s)	169, 520, 881, 1996, 2247, 2316, 2363, 2409
BmcAI	AGTACT	1 cut(s)	1270
Bme1390I	CCNGG	1 cut(s)	2392
Bme18I	GGWCC	4 cut(s)	453, 1836, 2034, 2383
BmeRI	GACNNNNNGTC	1 cut(s)	1241
BmeT110I	CYCGRG	2 cut(s)	602, 1009
BmgT120I	GGNCC	4 cut(s)	453, 1836, 2034, 2383
BmiI	GGNNCC	6 cut(s)	922, 1446, 1812, 1919, 1985, 2385
BmrFI	CCNGG	1 cut(s)	2392
BmrI	ACTGGG	1 cut(s)	2009
BmsI	GCATC	3 cut(s)	199, 717, 1176
BmuI	ACTGGG	1 cut(s)	2009
BoxI	GACNNNNGTC	1 cut(s)	1396
BpiI	GAAGAC	2 cut(s)	313, 1011
BplI	GAGNNNNNCTC	4 cut(s)	788, 820, 2204, 2236
BpmI	CTGGAG	1 cut(s)	1893
BpuEI	CTTGAG	4 cut(s)	496, 854, 1817, 2481
BsaAI	YACGTR	2 cut(s)	351, 2205
BsaBI	GATNNNNATC	1 cut(s)	1809
BsaHI	GRCGYC	1 cut(s)	2463
BsaI	GGTCTC	1 cut(s)	1094
BsaJI	CCNNGG	1 cut(s)	1979
BsaWI	WCCGGW	1 cut(s)	2031
BsaXI	ACNNNNNCTCC	6 cut(s)	884, 914, 1891, 1921, 2321, 2351
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 228, 1940, 2031
Bse1I	ACTGG	1 cut(s)	2015
Bse3DI	GCAATG	1 cut(s)	692
Bse8I	GATNNNNATC	1 cut(s)	1809
BseBI	CCWGG	1 cut(s)	2392
BseDI	CCNNGG	1 cut(s)	1979
BseGI	GGATG	7 cut(s)	46, 496, 745, 1167, 1759, 1761, 1853
BseJI	GATNNNNATC	1 cut(s)	1809
BseLI	CCNNNNNNNGG	4 cut(s)	32, 228, 1940, 2031
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	4 cut(s)	227, 1105, 1186, 1354
BseNI	ACTGG	1 cut(s)	2015
BseRI	GAGGAG	2 cut(s)	1516, 2125
BseSI	GKGCMC	1 cut(s)	1384
BseXI	GCAGC	3 cut(s)	154, 2257, 2394
BseYI	CCCAGC	1 cut(s)	1889
BsgI	GTGCAG	2 cut(s)	1490, 2441
Bsh1236I	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
Bsh1285I	CGRYCG	3 cut(s)	1245, 2005, 2032
BshFI	GGCC	3 cut(s)	2369, 2395, 2433
BshNI	GGYRCC	2 cut(s)	920, 1983
BsiEI	CGRYCG	3 cut(s)	1245, 2005, 2032
BsiHKAI	GWGCWC	3 cut(s)	603, 1384, 2346
BsiHKCI	CYCGRG	2 cut(s)	602, 1009
BsiSI	CCGG	2 cut(s)	2032, 2139
BsiWI	CGTACG	1 cut(s)	2205
BslFI	GGGAC	2 cut(s)	2003, 2058
BslI	CCNNNNNNNGG	4 cut(s)	32, 228, 1940, 2031
BsmAI	GTCTC	5 cut(s)	901, 1094, 1357, 2106, 2341
BsmBI	CGTCTC	1 cut(s)	2106
BsmFI	GGGAC	2 cut(s)	2003, 2058
BsmI	GAATGC	2 cut(s)	94, 1734
BsnI	GGCC	3 cut(s)	2369, 2395, 2433
Bso31I	GGTCTC	1 cut(s)	1094
BsoBI	CYCGRG	2 cut(s)	602, 1009
Bsp1286I	GDGCHC	3 cut(s)	603, 1384, 2346
Bsp143I	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
Bsp19I	CCATGG	1 cut(s)	1979
BspANI	GGCC	3 cut(s)	2369, 2395, 2433
BspCNI	CTCAG	4 cut(s)	228, 1104, 1185, 1353
BspFNI	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
BspLI	GGNNCC	6 cut(s)	922, 1446, 1812, 1919, 1985, 2385
BspMI	ACCTGC	1 cut(s)	2463
BspPI	GGATC	4 cut(s)	1805, 1818, 1912, 1925
BspT107I	GGYRCC	2 cut(s)	920, 1983
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	1094
BsrDI	GCAATG	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	2015
BssECI	CCNNGG	1 cut(s)	1979
BssMI	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
BssNI	GRCGYC	1 cut(s)	2463
BssSI	CACGAG	1 cut(s)	1354
BssT1I	CCWWGG	1 cut(s)	1979
Bst2BI	CACGAG	1 cut(s)	1354
Bst2UI	CCWGG	1 cut(s)	2392
Bst6I	CTCTTC	4 cut(s)	68, 879, 1121, 2086
BstACI	GRCGYC	1 cut(s)	2463
BstAFI	CTTAAG	1 cut(s)	247
BstAPI	GCANNNNNTGC	2 cut(s)	1076, 2068
BstBAI	YACGTR	2 cut(s)	351, 2205
BstC8I	GCNNGC	6 cut(s)	264, 409, 877, 1637, 1734, 1832
BstDEI	CTNAG	4 cut(s)	236, 1091, 1172, 1340
BstDSI	CCRYGG	1 cut(s)	1979
BstF5I	GGATG	7 cut(s)	46, 496, 745, 1167, 1759, 1761, 1853
BstFNI	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
BstH2I	RGCGCY	2 cut(s)	666, 1575
BstHHI	GCGC	8 cut(s)	268, 319, 665, 685, 716, 1574, 1874, 1969
BstKTI	GATC	8 cut(s)	724, 1795, 1813, 1882, 1915, 1920, 1940, 2075
BstMAI	GTCTC	5 cut(s)	901, 1094, 1357, 2106, 2341
BstMBI	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
BstMCI	CGRYCG	3 cut(s)	1245, 2005, 2032
BstMWI	GCNNNNNNNGC	6 cut(s)	607, 713, 814, 1076, 1478, 2068
BstNI	CCWGG	1 cut(s)	2392
BstNSI	RCATGY	5 cut(s)	1145, 1485, 1588, 1639, 1788
BstPAI	GACNNNNGTC	1 cut(s)	1396
BstSCI	CCNGG	1 cut(s)	2390
BstSLI	GKGCMC	1 cut(s)	1384
BstSNI	TACGTA	1 cut(s)	351
BstUI	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
BstV1I	GCAGC	3 cut(s)	154, 2257, 2394
BstV2I	GAAGAC	2 cut(s)	313, 1011
BstX2I	RGATCY	3 cut(s)	1792, 1810, 1917
BstXI	CCANNNNNNTGG	1 cut(s)	1980
BstYI	RGATCY	3 cut(s)	1792, 1810, 1917
BsuI	GTATCC	2 cut(s)	970, 2466
BsuRI	GGCC	3 cut(s)	2369, 2395, 2433
BtgI	CCRYGG	1 cut(s)	1979
BtsCI	GGATG	7 cut(s)	46, 496, 745, 1167, 1759, 1761, 1853
BtsI	GCAGTG	1 cut(s)	1779
BtsIMutI	CAGTG	4 cut(s)	174, 233, 1696, 1779
BveI	ACCTGC	1 cut(s)	2463
Cac8I	GCNNGC	6 cut(s)	264, 409, 877, 1637, 1734, 1832
CaiI	CAGNNNCTG	1 cut(s)	2407
CfoI	GCGC	8 cut(s)	268, 319, 665, 685, 716, 1574, 1874, 1969
Cfr13I	GGNCC	4 cut(s)	453, 1836, 2034, 2383
CseI	GACGC	2 cut(s)	2088, 2471
Csp6I	GTAC	4 cut(s)	472, 1269, 2151, 2206
CspCI	CAANNNNNGTGG	2 cut(s)	952, 987
CviQI	GTAC	4 cut(s)	472, 1269, 2151, 2206
DdeI	CTNAG	4 cut(s)	236, 1091, 1172, 1340
DpnI	GATC	8 cut(s)	723, 1794, 1812, 1881, 1914, 1919, 1939, 2074
DpnII	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
DriI	GACNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	2 cut(s)	2393, 2431
Eam1104I	CTCTTC	4 cut(s)	68, 879, 1121, 2086
Eam1105I	GACNNNNNGTC	1 cut(s)	1241
EarI	CTCTTC	4 cut(s)	68, 879, 1121, 2086
EciI	GGCGGA	2 cut(s)	2014, 2212
Ecl136II	GAGCTC	1 cut(s)	601
Eco105I	TACGTA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	1979
Eco147I	AGGCCT	1 cut(s)	2369
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	1094
Eco47I	GGWCC	4 cut(s)	453, 1836, 2034, 2383
Eco47III	AGCGCT	2 cut(s)	664, 1573
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	1422
Eco88I	CYCGRG	2 cut(s)	602, 1009
EcoICRI	GAGCTC	1 cut(s)	601
EcoRI	GAATTC	2 cut(s)	215, 2295
EcoRII	CCWGG	1 cut(s)	2390
EcoT14I	CCWWGG	1 cut(s)	1979
EcoT22I	ATGCAT	1 cut(s)	1456
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	1979
Esp3I	CGTCTC	1 cut(s)	2106
FaqI	GGGAC	2 cut(s)	2003, 2058
FauI	CCCGC	1 cut(s)	2162
FauNDI	CATATG	1 cut(s)	1106
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	2440
Fnu4HI	GCNGC	8 cut(s)	168, 519, 880, 1995, 2246, 2315, 2362, 2408
FokI	GGATG	7 cut(s)	33, 503, 752, 1154, 1748, 1766, 1840
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	8 cut(s)	168, 519, 880, 1995, 2246, 2315, 2362, 2408
FspBI	CTAG	3 cut(s)	1262, 1274, 1935
FspI	TGCGCA	1 cut(s)	684
GlaI	GCGC	8 cut(s)	267, 318, 664, 684, 715, 1573, 1873, 1968
GluI	GCNGC	8 cut(s)	168, 519, 880, 1995, 2246, 2315, 2362, 2408
GsaI	CCCAGC	1 cut(s)	1893
GsuI	CTGGAG	1 cut(s)	1893
HaeII	RGCGCY	2 cut(s)	666, 1575
HaeIII	GGCC	3 cut(s)	2369, 2395, 2433
HapII	CCGG	2 cut(s)	2032, 2139
HgaI	GACGC	2 cut(s)	2088, 2471
HhaI	GCGC	8 cut(s)	268, 319, 665, 685, 716, 1574, 1874, 1969
Hin1I	GRCGYC	1 cut(s)	2463
Hin6I	GCGC	8 cut(s)	266, 317, 663, 683, 714, 1572, 1872, 1967
HinP1I	GCGC	8 cut(s)	266, 317, 663, 683, 714, 1572, 1872, 1967
HincII	GTYRAC	3 cut(s)	658, 1147, 2441
HindII	GTYRAC	3 cut(s)	658, 1147, 2441
HindIII	AAGCTT	2 cut(s)	498, 2282
HinfI	GANTC	9 cut(s)	535, 625, 1007, 1397, 1519, 1648, 2231, 2267, 2484
HpaII	CCGG	2 cut(s)	2032, 2139
HphI	GGTGA	5 cut(s)	1191, 1853, 1874, 2158, 2444
Hpy166II	GTNNAC	7 cut(s)	658, 852, 1147, 1219, 1359, 1382, 2441
Hpy188I	TCNGA	8 cut(s)	154, 726, 1175, 1235, 1343, 1402, 1917, 2002
Hpy8I	GTNNAC	7 cut(s)	658, 852, 1147, 1219, 1359, 1382, 2441
Hpy99I	CGWCG	6 cut(s)	425, 1872, 2231, 2256, 2323, 2465
HpyAV	CCTTC	8 cut(s)	66, 883, 1078, 1657, 1824, 1857, 1914, 2170
HpyCH4IV	ACGT	2 cut(s)	350, 2204
HpyF10VI	GCNNNNNNNGC	6 cut(s)	607, 713, 814, 1076, 1478, 2068
HpyF3I	CTNAG	4 cut(s)	236, 1091, 1172, 1340
HpySE526I	ACGT	2 cut(s)	350, 2204
Hsp92I	GRCGYC	1 cut(s)	2463
HspAI	GCGC	8 cut(s)	266, 317, 663, 683, 714, 1572, 1872, 1967
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
LmnI	GCTCC	3 cut(s)	197, 1569, 2253
Lsp1109I	GCAGC	3 cut(s)	154, 2257, 2394
LweI	GCATC	3 cut(s)	199, 717, 1176
MaeI	CTAG	3 cut(s)	1262, 1274, 1935
MaeII	ACGT	2 cut(s)	350, 2204
MaeIII	GTNAC	8 cut(s)	231, 346, 644, 912, 1048, 1606, 1694, 2164
MalI	GATC	8 cut(s)	723, 1794, 1812, 1881, 1914, 1919, 1939, 2074
MboI	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
MfeI	CAATTG	2 cut(s)	1514, 2510
MflI	RGATCY	3 cut(s)	1792, 1810, 1917
MhlI	GDGCHC	3 cut(s)	603, 1384, 2346
MlsI	TGGCCA	1 cut(s)	2395
MluNI	TGGCCA	1 cut(s)	2395
MlyI	GAGTC	3 cut(s)	1001, 1406, 2478
MmeI	TCCRAC	7 cut(s)	468, 570, 717, 731, 1351, 2025, 2197
Mox20I	TGGCCA	1 cut(s)	2395
Mph1103I	ATGCAT	1 cut(s)	1456
MroXI	GAANNNNTTC	1 cut(s)	1500
MscI	TGGCCA	1 cut(s)	2395
MseI	TTAA	8 cut(s)	188, 248, 465, 672, 824, 896, 2216, 2421
MslI	CAYNNNNRTG	3 cut(s)	1822, 1978, 2309
Msp20I	TGGCCA	1 cut(s)	2395
MspA1I	CMGCKG	1 cut(s)	1750
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	2 cut(s)	2032, 2139
MspR9I	CCNGG	1 cut(s)	2392
MunI	CAATTG	2 cut(s)	1514, 2510
Mva1269I	GAATGC	2 cut(s)	94, 1734
MvaI	CCWGG	1 cut(s)	2392
MvnI	CGCG	6 cut(s)	317, 714, 716, 1872, 1967, 2099
MwoI	GCNNNNNNNGC	6 cut(s)	607, 713, 814, 1076, 1478, 2068
NcoI	CCATGG	1 cut(s)	1979
NdeI	CATATG	1 cut(s)	1106
NdeII	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
NlaIV	GGNNCC	6 cut(s)	922, 1446, 1812, 1919, 1985, 2385
NmeAIII	GCCGAG	2 cut(s)	2038, 2280
NmuCI	GTSAC	3 cut(s)	231, 1694, 2164
NsbI	TGCGCA	1 cut(s)	684
NsiI	ATGCAT	1 cut(s)	1456
NspI	RCATGY	5 cut(s)	1145, 1485, 1588, 1639, 1788
PaeI	GCATGC	1 cut(s)	1639
PaeR7I	CTCGAG	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	2463
PceI	AGGCCT	1 cut(s)	2369
PciI	ACATGT	2 cut(s)	1141, 1584
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	2 cut(s)	94, 1734
PdmI	GAANNNNTTC	1 cut(s)	1500
PfeI	GAWTC	6 cut(s)	535, 625, 1519, 1648, 2231, 2267
Pfl23II	CGTACG	1 cut(s)	2205
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	8 cut(s)	169, 520, 881, 1996, 2247, 2316, 2363, 2409
PleI	GAGTC	3 cut(s)	1001, 1405, 2478
PpsI	GAGTC	3 cut(s)	1001, 1405, 2478
Ppu21I	YACGTR	2 cut(s)	351, 2205
PscI	ACATGT	2 cut(s)	1141, 1584
PshAI	GACNNNNGTC	1 cut(s)	1396
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	2390
PspFI	CCCAGC	1 cut(s)	1889
PspGI	CCWGG	1 cut(s)	2390
PspLI	CGTACG	1 cut(s)	2205
PspN4I	GGNNCC	6 cut(s)	922, 1446, 1812, 1919, 1985, 2385
PspPI	GGNCC	4 cut(s)	453, 1836, 2034, 2383
PstNI	CAGNNNCTG	1 cut(s)	2407
PsuI	RGATCY	3 cut(s)	1792, 1810, 1917
PvuII	CAGCTG	1 cut(s)	1750
RsaI	GTAC	4 cut(s)	473, 1270, 2152, 2207
RsaNI	GTAC	4 cut(s)	472, 1269, 2151, 2206
RseI	CAYNNNNRTG	3 cut(s)	1822, 1978, 2309
SacI	GAGCTC	1 cut(s)	603
SalI	GTCGAC	1 cut(s)	2439
SaqAI	TTAA	8 cut(s)	188, 248, 465, 672, 824, 896, 2216, 2421
SatI	GCNGC	8 cut(s)	168, 519, 880, 1995, 2246, 2315, 2362, 2408
Sau3AI	GATC	8 cut(s)	721, 1792, 1810, 1879, 1912, 1917, 1937, 2072
Sau96I	GGNCC	4 cut(s)	453, 1836, 2034, 2383
ScaI	AGTACT	1 cut(s)	1270
SchI	GAGTC	3 cut(s)	1001, 1406, 2478
ScrFI	CCNGG	1 cut(s)	2392
SduI	GDGCHC	3 cut(s)	603, 1384, 2346
SfaNI	GCATC	3 cut(s)	199, 717, 1176
Sfr274I	CTCGAG	1 cut(s)	1009
SinI	GGWCC	4 cut(s)	453, 1836, 2034, 2383
SlaI	CTCGAG	1 cut(s)	1009
SmiMI	CAYNNNNRTG	3 cut(s)	1822, 1978, 2309
SmlI	CTYRAG	6 cut(s)	247, 475, 869, 1009, 1796, 2496
SmoI	CTYRAG	6 cut(s)	247, 475, 869, 1009, 1796, 2496
SnaBI	TACGTA	1 cut(s)	351
SphI	GCATGC	1 cut(s)	1639
SseBI	AGGCCT	1 cut(s)	2369
SspMI	CTAG	3 cut(s)	1262, 1274, 1935
SstI	GAGCTC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	2369
StyD4I	CCNGG	1 cut(s)	2390
StyI	CCWWGG	1 cut(s)	1979
TaiI	ACGT	2 cut(s)	353, 2207
TaqI	TCGA	7 cut(s)	420, 1010, 1117, 1245, 1726, 2229, 2440
TaqII	GACCGA	1 cut(s)	1231
TatI	WGTACW	1 cut(s)	1268
TauI	GCSGC	5 cut(s)	521, 882, 1997, 2317, 2364
TfiI	GAWTC	6 cut(s)	535, 625, 1519, 1648, 2231, 2267
Tru1I	TTAA	8 cut(s)	188, 248, 465, 672, 824, 896, 2216, 2421
Tru9I	TTAA	8 cut(s)	188, 248, 465, 672, 824, 896, 2216, 2421
TscAI	CASTG	4 cut(s)	181, 240, 1703, 1786
TseFI	GTSAC	3 cut(s)	231, 1694, 2164
TseI	GCWGC	3 cut(s)	167, 2245, 2407
Tsp45I	GTSAC	3 cut(s)	231, 1694, 2164
TspDTI	ATGAA	7 cut(s)	392, 510, 1139, 1455, 1806, 1839, 2265
TspGWI	ACGGA	5 cut(s)	1625, 1660, 2240, 2329, 2404
TspRI	CASTG	4 cut(s)	181, 240, 1703, 1786
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	1380
VpaK11BI	GGWCC	4 cut(s)	453, 1836, 2034, 2383
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	5 cut(s)	100, 133, 215, 571, 2295
XceI	RCATGY	5 cut(s)	1145, 1485, 1588, 1639, 1788
XcmI	CCANNNNNNNNNTGG	3 cut(s)	970, 1561, 1977
XhoI	CTCGAG	1 cut(s)	1009
XmiI	GTMKAC	1 cut(s)	2440
XmnI	GAANNNNTTC	1 cut(s)	1500
XspI	CTAG	3 cut(s)	1262, 1274, 1935
ZrmI	AGTACT	1 cut(s)	1270
Zsp2I	ATGCAT	1 cut(s)	1456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.