Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038463.1

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Reverse (-)

1670 .. 2485

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038463.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgaggaacagaaacacagttacatggacatctattatagcagggtatgcaaggaagggtctcagcgaggaagccatatgcctctttcgactaatgaagaggcgaaacatacatgtcaacaacttgaccattgtaagcatccttagagcttgtggattgattaggtattcaccgatgggtagggaagttcacgcacagataatcaaacactcggtcgaaacaaacttatatctaggaagtactctagtgtggttctactgcaagtgtggggattactcgactgccacaaaagtcctccaacaaatgcctctcagagatgttgtctcgtggactgccatcatttctggttgtgcacatcttggacatgagtctgaagctattgagttgttgaaagaaatgatggaggacggggtggaacccaatgcatttacttattcatctgctttgaaagcatgtgctaacttggaaaccattctgcacgggcaattgattcactcctctgcaaataaaagtccagccatgtccaatgtgtttgtggggagcgctttgatttacatgtatgcaaaatgtggctatgtaacagaggcatttcaagtttttgacagcatgcctgaacggaatctggtatcatggaaggctatgatagtgggttatgcaaggaacggtcactgtcaagaggctttgaagctcatgtatcgaatgcaagcagagggttttcagctggatgattacatccttgctactgttctcactgcatgtggagatcttgagtgggatatggatccttcatttgtgtgtagcctgcggtccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

271

Amino Acids

30.46

Weight (kDa)

7.56

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	805
AclWI	GGATC	2 cut(s)	776, 789
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	241
AfeI	AGCGCT	1 cut(s)	544
AflIII	ACRYGT	2 cut(s)	112, 555
AgsI	TTSAA	4 cut(s)	391, 448, 593, 685
AjnI	CCWGG	1 cut(s)	809
AluBI	AGCT	4 cut(s)	149, 377, 688, 721
AluI	AGCT	4 cut(s)	149, 377, 688, 721
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	65, 328
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	776, 789
Aor51HI	AGCGCT	1 cut(s)	544
ApaLI	GTGCAC	1 cut(s)	351
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	807
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	807
BaeGI	GKGCMC	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	781
BauI	CACGAG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	3 cut(s)	169, 344, 394
BciT130I	CCWGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	65, 328
BfaI	CTAG	2 cut(s)	233, 245
BfoI	RGCGCY	1 cut(s)	546
BglII	AGATCT	1 cut(s)	763
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	1 cut(s)	807
BmiI	GGNNCC	2 cut(s)	417, 783
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	811
BseGI	GGATG	3 cut(s)	138, 730, 732
BseJI	GATNNNNATC	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	76, 325
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	65, 328
BsmI	GAATGC	1 cut(s)	705
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	763, 781
BspACI	CCGC	1 cut(s)	805
BspCNI	CTCAG	2 cut(s)	75, 324
BspLI	GGNNCC	2 cut(s)	417, 783
BspPI	GGATC	2 cut(s)	776, 789
BspTNI	GGTCTC	1 cut(s)	65
BssMI	GATC	2 cut(s)	763, 781
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	4 cut(s)	19, 665, 671, 745
Bst6I	CTCTTC	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	608, 705, 803
BstDEI	CTNAG	3 cut(s)	62, 143, 311
BstF5I	GGATG	3 cut(s)	138, 730, 732
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	2 cut(s)	766, 784
BstMAI	GTCTC	2 cut(s)	65, 328
BstMBI	GATC	2 cut(s)	763, 781
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 449
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	5 cut(s)	116, 456, 559, 610, 759
BstPAI	GACNNNNGTC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	809
BstSLI	GKGCMC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	763, 781
BstYI	RGATCY	2 cut(s)	763, 781
BtsCI	GGATG	3 cut(s)	138, 730, 732
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	667, 750
Cac8I	GCNNGC	3 cut(s)	608, 705, 803
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	807
Csp6I	GTAC	1 cut(s)	240
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	62, 143, 311
DpnI	GATC	2 cut(s)	765, 783
DpnII	GATC	2 cut(s)	763, 781
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	807
Eco47III	AGCGCT	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	809
EcoT22I	ATGCAT	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	77
FokI	GGATG	3 cut(s)	125, 719, 737
FspBI	CTAG	2 cut(s)	233, 245
GlaI	GCGC	1 cut(s)	544
HaeII	RGCGCY	1 cut(s)	546
HhaI	GCGC	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	368, 490, 619
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	4 cut(s)	118, 190, 330, 353
Hpy188I	TCNGA	2 cut(s)	314, 373
Hpy188III	TCNNGA	2 cut(s)	674, 767
Hpy8I	GTNNAC	4 cut(s)	118, 190, 330, 353
HpyAV	CCTTC	3 cut(s)	49, 628, 795
HpyCH4III	ACNGT	4 cut(s)	19, 665, 671, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 449
HpyF3I	CTNAG	3 cut(s)	62, 143, 311
HspAI	GCGC	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	763, 781
LmnI	GCTCC	1 cut(s)	540
LpnPI	CCDG	7 cut(s)	27, 330, 528, 608, 624, 707, 796
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	233, 245
MaeIII	GTNAC	3 cut(s)	19, 577, 665
MalI	GATC	2 cut(s)	765, 783
MboI	GATC	2 cut(s)	763, 781
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	2 cut(s)	763, 781
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	322
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	793
MspA1I	CMGCKG	1 cut(s)	721
MspR9I	CCNGG	1 cut(s)	811
MunI	CAATTG	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	2 cut(s)	47, 449
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	2 cut(s)	763, 781
NlaIV	GGNNCC	2 cut(s)	417, 783
NmuCI	GTSAC	1 cut(s)	665
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	5 cut(s)	116, 456, 559, 610, 759
PaeI	GCATGC	1 cut(s)	610
PciI	ACATGT	2 cut(s)	112, 555
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	490, 619
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	2 cut(s)	112, 555
PshAI	GACNNNNGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	2 cut(s)	417, 783
PspPI	GGNCC	1 cut(s)	807
PsuI	RGATCY	2 cut(s)	763, 781
PvuII	CAGCTG	1 cut(s)	721
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	793
Sau3AI	GATC	2 cut(s)	763, 781
Sau96I	GGNCC	1 cut(s)	807
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	6 cut(s)	151, 167, 379, 690, 723, 815
SfaNI	GCATC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	793
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	1 cut(s)	485
SsiI	CCGC	1 cut(s)	805
SspMI	CTAG	2 cut(s)	233, 245
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	19, 665, 671, 745
TaqI	TCGA	4 cut(s)	88, 216, 278, 697
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	485
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	490, 619
TscAI	CASTG	2 cut(s)	674, 757
TseFI	GTSAC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	3 cut(s)	110, 426, 777
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	2 cut(s)	674, 757
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	807
XceI	RCATGY	5 cut(s)	116, 456, 559, 610, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	233, 245
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.