Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013463

Physical Location & Seq

Genomic Coordinates Reverse (-)

36747932 .. 36754305

Gene Structure 6374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0334900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCAAAGTTCGTATACCCTCGGCTGTCCCGGAGCGACATAGTGTCAATCGTGATGGACGCTCAGATCATGGATATTTCGGAGCACCATCTTCTCAACCCCAACCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCATCGCTCTCGACTTCTTCAATCAGGATTTTGGGCAAGTTGATTTCGATGCCTTGCAGCAGTTTGAGAATCCAGATTTTCATGAGACCTCCCTCCACAGCATCAACCTCTGCAACAGAATCAAGCAAGTCCTCGCCTTAGTCGATTGCCCTTACAATTTCACCCTCAAAGATCTCCTCAGACCCGACCCCAATCGCACTGAGTACTTTCTCAGTGCTATTATCAATTACCATCTTTACAGAGAGACGAAAGTGAATCTACTCACCGAACTTATGAATCCGTTAACGGAGATTGAGGAGCAGCACCAATTGTTGCAGGGCCAGATTTCACAGTTGAATGCTGAGATTGCGGGTTTCAATGAAGCAAGAGAAAAGGAGTTGCCTCTTCTTCAGGAGGTAGATGCCAGAGTTAAAGAATTGCGCCAAACCATTGAAGGCCTCAACAACGACCAAGTTAAAGTCAGAACTTCTCTTAAGAAGTTGAAGGAGAAGAGTGGAGAAATGGACAAAGAGATTTCTGATGCTGATTTTGATCTGCTAAAATGTGATTCTGAGAGACAAGAATTACGTTCAAGAATTGTACAGTCACCAGATAAACTGCAGAGGGCTGTAGAAGAGAAGAAATCAATTCGAGAGAAGGCAAAGAATGATGAAATGTCAGCCATGCAATCTTTTAAGGAGAAGACTGCTGTTGAGGAGGTTTATACGAAGGTTCTAAAGAAATTATCAAAGCACTTGGCTCAGATGCAAGCTATACAAGAACAGGTCAATTCTGCTAAATTTGCTGGCAAAGACTATAAAGCATTAAAAGATAAAATAAGTGATGATGAAATCCTGATCAAGTCTCTTCAGAATGAAGTTGTGAAACGACAGGCAAAAGTGAAAGATTTGAATGACTTGAAAAGGAAACTAGAAAAGGAAAGAGATCTAAAGTTTGAGGAGGCTACTAAAGAATATAGTAATGTCAAGCTGGAGGTGGAATCAAGGAGGGGTGTTCTCGAAGCAAGGCAAAAGGATGTTGAAGCTGCAGTAGCAGAGGTGGATTCTATAACTGCAAAGGTTGCCTCGGTAAGAAAATCTGCAGCAGCCGATCAGCAAGCATTAGCTCATAAGTGTGAGGAGATCATTAAAGAGTTCCACCAATATGCAAGTTCAATTCGGGTCTTGCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

437

Amino Acids

50.42

Weight (kDa)

5.78

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	4 - 139	3.1e-28	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18520
fragaria_vesca	FvH4_5g38291
malus_domestica	MD15G1361300.v1.1
prunus_persica	Prupe.1G508700_v2.0.a1
pyrus_communis	pycom15g32280
rosa_chinensis	RchiOBHm_Chr7g0240331
rosa_laevigata	RLG00000000684
rosa_multiflora	Rmu_sc0002676.1_g000012 Rmu_sc0025468.1_g000002 Rmu_sc0037875.1_g000001 Rmu_sc0038463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220210
rosa_rugosa	Rorug07G0334900
rosa_samantha	Rh7AG489200 Rh7BG462100 Rh7CG505400 Rh7DG473200
rosa_wichuraiana	Rw7G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	2 cut(s)	133, 488
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	2 cut(s)	512, 971
AfaI	GTAC	2 cut(s)	344, 720
AflII	CTTAAG	1 cut(s)	611
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	890, 1108, 1163, 1244
AluI	AGCT	4 cut(s)	890, 1108, 1163, 1244
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	4 cut(s)	218, 377, 688, 987
AoxI	GGCC	2 cut(s)	457, 574
ApeKI	GCWGC	6 cut(s)	196, 439, 1163, 1220, 1223, 1306
ApoI	RAATTY	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	292, 394, 717
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	6 cut(s)	208, 451, 1150, 1232, 1235, 1293
BccI	CCATC	3 cut(s)	49, 96, 378
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BclI	TGATCA	1 cut(s)	975
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	218, 377, 688, 987
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	4 cut(s)	737, 747, 1164, 1218
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	2 cut(s)	310, 1063
BisI	GCNGC	6 cut(s)	197, 440, 1164, 1221, 1224, 1307
BlsI	GCNGC	6 cut(s)	198, 441, 1165, 1222, 1225, 1308
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	6 cut(s)	144, 178, 249, 529, 649, 873
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	1130
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	20, 1203
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	20, 1203
BseGI	GGATG	2 cut(s)	135, 1159
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	7 cut(s)	77, 330, 331, 364, 471, 681, 893
BseRI	GAGGAG	5 cut(s)	305, 449, 848, 1091, 1271
BseXI	GCAGC	6 cut(s)	208, 451, 1150, 1232, 1235, 1293
BshFI	GGCC	2 cut(s)	459, 576
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	4 cut(s)	218, 377, 688, 987
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	459, 576
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
BspACI	CCGC	2 cut(s)	133, 488
BspANI	GGCC	2 cut(s)	459, 576
BspCNI	CTCAG	7 cut(s)	76, 330, 331, 363, 472, 682, 892
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	3 cut(s)	741, 1168, 1222
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	718
BssECI	CCNNGG	2 cut(s)	20, 1203
BssMI	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
BssNAI	GTATAC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	471, 723
Bst6I	CTCTTC	4 cut(s)	528, 623, 747, 990
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	888, 925, 1236
BstDEI	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 879
BstF5I	GGATG	2 cut(s)	135, 1159
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	7 cut(s)	69, 313, 673, 978, 1066, 1231, 1263
BstMAI	GTCTC	4 cut(s)	218, 377, 688, 987
BstMBI	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 920, 1169, 1199
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	4 cut(s)	737, 747, 1164, 1218
BstV1I	GCAGC	6 cut(s)	208, 451, 1150, 1232, 1235, 1293
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	2 cut(s)	310, 1063
BstYI	RGATCY	2 cut(s)	310, 1063
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	459, 576
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	135, 1159
BtsIMutI	CAGTG	2 cut(s)	336, 358
Cac8I	GCNNGC	3 cut(s)	888, 925, 1236
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	343, 719
CviAII	CATG	3 cut(s)	70, 221, 802
CviQI	GTAC	2 cut(s)	343, 719
DdeI	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 879
DpnI	GATC	7 cut(s)	68, 312, 672, 977, 1065, 1230, 1262
DpnII	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	528, 623, 747, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	4 cut(s)	528, 623, 747, 990
Eco147I	AGGCCT	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	512, 971
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	73, 224, 805
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	3 cut(s)	69, 220, 801
FauI	CCCGC	2 cut(s)	140, 481
FbaI	TGATCA	1 cut(s)	975
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	197, 440, 1164, 1221, 1224, 1307
FokI	GGATG	2 cut(s)	122, 1166
Fsp4HI	GCNGC	6 cut(s)	197, 440, 1164, 1221, 1224, 1307
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	6 cut(s)	197, 440, 1164, 1221, 1224, 1307
GsuI	CTGGAG	1 cut(s)	1130
HaeIII	GGCC	2 cut(s)	459, 576
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	73, 224, 805
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	292, 394, 717
Hpy166II	GTNNAC	2 cut(s)	16, 423
Hpy188I	TCNGA	8 cut(s)	66, 82, 320, 602, 658, 691, 882, 990
Hpy8I	GTNNAC	2 cut(s)	16, 423
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	566, 616, 769, 841
HpyCH4III	ACNGT	2 cut(s)	471, 723
HpyCH4IV	ACGT	1 cut(s)	706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 920, 1169, 1199
HpyF3I	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 879
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	3 cut(s)	73, 224, 805
HspAI	GCGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	975
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
LmnI	GCTCC	3 cut(s)	33, 82, 436
Lsp1109I	GCAGC	6 cut(s)	208, 451, 1150, 1232, 1235, 1293
LweI	GCATC	6 cut(s)	144, 178, 249, 529, 649, 873
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	723
MalI	GATC	7 cut(s)	68, 312, 672, 977, 1065, 1230, 1262
MboI	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
MboII	GAAGA	9 cut(s)	83, 148, 515, 518, 640, 764, 769, 832, 977
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	2 cut(s)	310, 1063
MhlI	GDGCHC	1 cut(s)	87
MseI	TTAA	7 cut(s)	422, 549, 594, 612, 813, 944, 1266
MslI	CAYNNNNRTG	2 cut(s)	1251, 1281
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	481
MwoI	GCNNNNNNNGC	4 cut(s)	485, 920, 1169, 1199
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
NlaIII	CATG	3 cut(s)	73, 224, 805
NmuCI	GTSAC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	198, 441, 1165, 1222, 1225, 1308
PspPI	GGNCC	1 cut(s)	457
PstI	CTGCAG	3 cut(s)	741, 1168, 1222
PsuI	RGATCY	2 cut(s)	310, 1063
RsaI	GTAC	2 cut(s)	344, 720
RsaNI	GTAC	2 cut(s)	343, 719
RseI	CAYNNNNRTG	2 cut(s)	1251, 1281
SaqAI	TTAA	7 cut(s)	422, 549, 594, 612, 813, 944, 1266
SatI	GCNGC	6 cut(s)	197, 440, 1164, 1221, 1224, 1307
Sau3AI	GATC	7 cut(s)	66, 310, 670, 975, 1063, 1228, 1260
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	6 cut(s)	144, 178, 249, 529, 649, 873
SfcI	CTRYAG	4 cut(s)	737, 747, 1164, 1218
SmiMI	CAYNNNNRTG	2 cut(s)	1251, 1281
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	2 cut(s)	133, 488
SspMI	CTAG	1 cut(s)	1049
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	471, 723
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	5 cut(s)	150, 186, 282, 769, 1137
TatI	WGTACW	2 cut(s)	342, 718
TfiI	GAWTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
Tru1I	TTAA	7 cut(s)	422, 549, 594, 612, 813, 944, 1266
Tru9I	TTAA	7 cut(s)	422, 549, 594, 612, 813, 944, 1266
TscAI	CASTG	2 cut(s)	343, 358
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	6 cut(s)	196, 439, 1163, 1220, 1223, 1306
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	6 cut(s)	209, 428, 513, 804, 981, 1008
TspGWI	ACGGA	2 cut(s)	408, 440
TspRI	CASTG	2 cut(s)	343, 358
Vha464I	CTTAAG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	1049
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.