FvH4_5g39030

PAPA-1-like conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012739
Physical Location & Seq
Forward (+)
28827500 .. 28832901
5402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39030.t1

Sequence Viewer

Length: 1761 bp
ATGGAAGAGTTTAGTACTCCTAGATTGGATATCAGCAATGCTGTGAGAAAGAAAAGAAGTCAAACTTTTCGCCGACCTCCACAACCACAACCTGAAATTCATGATCAGTCGCCATTGTCATCAGCAACACGTTCGGATGAATTGAGCAAGGTCTCTAGTGATGAGAATGGTGGTTGTGATACCAAATCTAAGCGGAAAGAATTGAGTCTTAATGAATGTATGGCTAGAGTAGCTTCTCCTAGGGGTAATGGTGACAACCCCTACAAAAAAGATAGGAAGGATAGAGGGTTCAATTCGTTTTACAATAATGAGCCGGGACGAAATGGGATCAGTAATAAACGCTCTAGTGAGGGTGTCCTTGCCCCTGCTAATTGGAAAAACACATGCACGGTGAAGGATGGTGTGATATCAGAGCCCAGAAATGCAGGTGCAGCTAATGGCGGGTATGGTGGAAGTCCAAGTACTAGGCTGTCAGGATCAGATGGATTTGAAAATGACAACAAGGTTAAAAAGCTCAAGCTGAAGGTTGGAGGAGTGACCCGGACAAATCAAGACAATTCCGCAGTCAATGGTACACAAGAGGAGGGGTTTTCTACAAAGTTATCTCAATCTTCAGATGTCTCTAGACCACGGCAGAAGCAAAATCTTATGCCAAGTTCAGATGATAATCATTCCCCTTTAGATAAGAAGAGTGGTTTGAAAGGAATTCCATGGAAGGATTTCTCAAGAAGTGGTATTAATCTTGGGAAGGATCAGGATCATTCTACAATGGTTAGGACATCCGGAAAGAACATCTCTGGAAGGGAAGGAGACAGATCTGAACCAGTCCGTAAGAGCAAGCGTGTACCCAAAAGGCGTGTACTTGATGGGGAGTTTGGAGATGATGAGGAAGATGATGAGATTCGGTATCTGGAGAAACTCAAAACATCAAAGGTTACTGGAGGATTTAGAGAAGAAGATGATGAAGAATCGAGCAGGAAACATAGAAAACTTTCTGTAGTTTCTAGTATTGATAATGCTGCTCCATCAAGGTCAGGCAAAGACCTAAAGAGGAAGTCCAGAACTGATAGAATATCTGGAGACGCTGATTATGAAGAAGAAGATATGTTATCTGATGGTGAGCTTGAAGGTAAAAAGAAGCAGAAGAAGGAAGCTGCTGAGCCTTTGTTAGATGGTAAGCGGGAAATGACCCTCACAACACGTCAACGGGCCCTTCAGTCGAGCAAAGATGCCTCTTCATCCCCTGGTTCAAGCTTAATTGAATTTCCGAATGGATTACCACCTGCAGCACCTAGAAAACAAAAAGAGAAATCTACCGAATATGACCAGCAGGTGAAGAAAGCTGAGGCTGCTCAGAGACGAAGAATGCAAATTGAGAAGGCTAATAGGGAATCTGAGGAGGAGGCTATTAGAAAAATACTTGGCCAAGATTCCAGTAGGAAAAAGAAGGAAGATAAAATAAAGAAGCGCCAAGAAGAACTGGCACAGGAGAAGGCTGCTAATGCTTTGGCGCTTGCATCAAGCACCATCAGATATGTGATGGGTCCAAACGGCACTACTGTGACATTCCCAGATGACATGGGTCTCCCCAGTTTATTTGACCCTAAACCTTGCAGTTATCCTCCGCCACGTGAGAAATGTGCCGGCCCATCATGTACGAATCCATACAAGTATAGGGACTCTAAATCAAAGCTTCCTCTTTGCAGTCTTTGGTGCTACAAGGCTGTCCAGGAAAAGACGCAACCAGAATCTACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAPA-1 zf-HIT

Protein Analysis

587

Amino Acids

65.09

Weight (kDa)

9.37

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPA-1 PF04795 443 - 527 4.9e-21 PAPA-1-like conserved region
zf-HIT PF04438 543 - 574 1.4e-06 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47350 AT2G47350
fragaria_vesca FvH4_5g39030
malus_domestica MD00G1140600.v1.1 MD03G1292700.v1.1
prunus_persica Prupe.8G265700_v2.0.a1
pyrus_communis pycom03g23200 pycom11g27340
rosa_chinensis RchiOBHm_Chr7g0241001
rosa_laevigata RLG00000000605
rosa_multiflora Rmu_sc0003187.1_g000010
rosa_roxburghii Rroxscaffold_3G00219330
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7AG496300 Rh7BG467600 Rh7CG513600 Rh7DG480800
rosa_wichuraiana Rw7G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 416, 1291, 1321
Acc36I ACCTGC 3 cut(s) 416, 1291, 1321
AccIII TCCGGA 1 cut(s) 782
AciI CCGC 5 cut(s) 193, 441, 561, 1180, 1625
AclWI GGATC 4 cut(s) 335, 484, 759, 765
AcoI YGGCCR 1 cut(s) 1423
AcsI RAATTY 3 cut(s) 96, 705, 1262
AcuI CTGAAG 3 cut(s) 542, 597, 1199
AcvI CACGTG 1 cut(s) 1631
AfaI GTAC 6 cut(s) 16, 463, 574, 846, 861, 1657
AflIII ACRYGT 2 cut(s) 128, 1199
AgsI TTSAA 6 cut(s) 292, 491, 700, 1127, 1251, 1262
AjiI CACGTC 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 1243, 1728
AleI CACNNNNGTG 1 cut(s) 1559
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 9 cut(s) 233, 434, 514, 520, 1123, 1154, 1254, 1343, 1693
AluI AGCT 9 cut(s) 233, 434, 514, 520, 1123, 1154, 1254, 1343, 1693
Alw26I GTCTC 6 cut(s) 157, 625, 804, 1074, 1351, 1589
AlwI GGATC 4 cut(s) 335, 484, 759, 765
Aor13HI TCCGGA 1 cut(s) 782
AoxI GGCC 3 cut(s) 1209, 1423, 1645
ApaI GGGCCC 1 cut(s) 1213
ApeKI GCWGC 6 cut(s) 431, 1019, 1154, 1286, 1349, 1496
ApoI RAATTY 3 cut(s) 96, 705, 1262
AseI ATTAAT 1 cut(s) 738
Asp700I GAANNNNTTC 2 cut(s) 719, 991
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 2 cut(s) 1470, 1513
AspS9I GGNCC 4 cut(s) 1209, 1210, 1544, 1646
AsuC2I CCSGG 2 cut(s) 315, 541
AsuHPI GGTGA 4 cut(s) 263, 403, 1130, 1345
AvaII GGWCC 1 cut(s) 1544
AvrII CCTAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 1213
BalI TGGCCA 1 cut(s) 1425
BanII GRGCYC 2 cut(s) 417, 1213
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BbrPI CACGTG 1 cut(s) 1631
BbvCI CCTCAGC 1 cut(s) 1344
BbvI GCAGC 6 cut(s) 443, 1006, 1141, 1298, 1336, 1483
BccI CCATC 9 cut(s) 392, 476, 860, 1033, 1109, 1166, 1534, 1535, 1657
BceAI ACGGC 2 cut(s) 647, 1567
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 2 cut(s) 1245, 1730
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 2 cut(s) 315, 541
BcoDI GTCTC 6 cut(s) 157, 625, 804, 1074, 1351, 1589
BfaI CTAG 9 cut(s) 21, 156, 225, 240, 345, 465, 624, 1005, 1293
BfmI CTRYAG 2 cut(s) 996, 1284
BfoI RGCGCY 2 cut(s) 1471, 1514
BfuAI ACCTGC 3 cut(s) 416, 1291, 1321
BglII AGATCT 1 cut(s) 815
BisI GCNGC 6 cut(s) 432, 1020, 1155, 1287, 1350, 1497
BlnI CCTAGG 1 cut(s) 239
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 6 cut(s) 433, 1021, 1156, 1288, 1351, 1498
BmcAI AGTACT 2 cut(s) 16, 463
Bme1390I CCNGG 4 cut(s) 315, 541, 1245, 1730
Bme18I GGWCC 1 cut(s) 1544
BmgBI CACGTC 1 cut(s) 1202
BmgT120I GGNCC 4 cut(s) 1209, 1210, 1544, 1646
BmiI GGNNCC 2 cut(s) 1211, 1545
BmrFI CCNGG 4 cut(s) 315, 541, 1245, 1730
BmrI ACTGGG 1 cut(s) 1584
BmsI GCATC 2 cut(s) 1219, 1526
BmuI ACTGGG 1 cut(s) 1584
BoxI GACNNNNGTC 1 cut(s) 1581
BpmI CTGGAG 3 cut(s) 932, 960, 1098
Bpu10I CCTNAGC 1 cut(s) 1344
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 2 cut(s) 500, 709
BpuMI CCSGG 2 cut(s) 315, 541
BsaAI YACGTR 1 cut(s) 1631
BsaBI GATNNNNATC 2 cut(s) 666, 756
BsaI GGTCTC 2 cut(s) 157, 1589
BsaJI CCNNGG 4 cut(s) 239, 629, 710, 1243
BsaWI WCCGGW 1 cut(s) 782
Bse118I RCCGGY 1 cut(s) 1643
Bse1I ACTGG 5 cut(s) 824, 943, 1434, 1485, 1590
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 666, 756
BseAI TCCGGA 1 cut(s) 782
BseBI CCWGG 2 cut(s) 1245, 1730
BseDI CCNNGG 4 cut(s) 239, 629, 710, 1243
BseGI GGATG 5 cut(s) 142, 403, 779, 1238, 1754
BseJI GATNNNNATC 2 cut(s) 666, 756
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 4 cut(s) 1149, 1335, 1367, 1386
BseNI ACTGG 5 cut(s) 824, 943, 1434, 1485, 1590
BseRI GAGGAG 4 cut(s) 546, 596, 1412, 1415
BseSI GKGCMC 1 cut(s) 1213
BseXI GCAGC 6 cut(s) 443, 1006, 1141, 1298, 1336, 1483
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 3 cut(s) 1211, 1425, 1647
BsiSI CCGG 4 cut(s) 314, 541, 783, 1644
BslFI GGGAC 2 cut(s) 330, 1691
BsmAI GTCTC 6 cut(s) 157, 625, 804, 1074, 1351, 1589
BsmBI CGTCTC 2 cut(s) 1074, 1351
BsmFI GGGAC 2 cut(s) 330, 1691
BsmI GAATGC 1 cut(s) 1371
BsnI GGCC 3 cut(s) 1211, 1425, 1647
Bso31I GGTCTC 2 cut(s) 157, 1589
Bsp120I GGGCCC 1 cut(s) 1209
Bsp1286I GDGCHC 2 cut(s) 417, 1213
Bsp13I TCCGGA 1 cut(s) 782
Bsp143I GATC 6 cut(s) 103, 327, 476, 751, 757, 815
Bsp1720I GCTNAGC 1 cut(s) 1158
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 5 cut(s) 193, 441, 561, 1180, 1625
BspANI GGCC 3 cut(s) 1211, 1425, 1647
BspCNI CTCAG 4 cut(s) 1150, 1336, 1366, 1387
BspEI TCCGGA 1 cut(s) 782
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 1211, 1545
BspMAI CTGCAG 1 cut(s) 1288
BspMI ACCTGC 3 cut(s) 416, 1291, 1321
BspPI GGATC 4 cut(s) 335, 484, 759, 765
BspTNI GGTCTC 2 cut(s) 157, 1589
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 1643
BsrI ACTGG 5 cut(s) 824, 943, 1434, 1485, 1590
BssAI RCCGGY 1 cut(s) 1643
BssECI CCNNGG 4 cut(s) 239, 629, 710, 1243
BssMI GATC 6 cut(s) 103, 327, 476, 751, 757, 815
BssT1I CCWWGG 2 cut(s) 239, 710
Bst2UI CCWGG 2 cut(s) 1245, 1730
Bst4CI ACNGT 2 cut(s) 391, 1561
Bst6I CTCTTC 2 cut(s) 683, 1240
BstBAI YACGTR 1 cut(s) 1631
BstC8I GCNNGC 3 cut(s) 839, 1515, 1645
BstDEI CTNAG 5 cut(s) 189, 1158, 1344, 1353, 1395
BstDSI CCRYGG 2 cut(s) 629, 710
BstF5I GGATG 5 cut(s) 142, 403, 779, 1238, 1754
BstH2I RGCGCY 2 cut(s) 1471, 1514
BstHHI GCGC 2 cut(s) 1470, 1513
BstKTI GATC 6 cut(s) 106, 330, 479, 754, 760, 818
BstMAI GTCTC 6 cut(s) 157, 625, 804, 1074, 1351, 1589
BstMBI GATC 6 cut(s) 103, 327, 476, 751, 757, 815
BstMWI GCNNNNNNNGC 4 cut(s) 230, 431, 1349, 1502
BstNI CCWGG 2 cut(s) 1245, 1730
BstNSI RCATGY 1 cut(s) 387
BstPAI GACNNNNGTC 1 cut(s) 1581
BstSCI CCNGG 4 cut(s) 313, 539, 1243, 1728
BstSFI CTRYAG 2 cut(s) 996, 1284
BstSLI GKGCMC 1 cut(s) 1213
BstV1I GCAGC 6 cut(s) 443, 1006, 1141, 1298, 1336, 1483
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
BsuRI GGCC 3 cut(s) 1211, 1425, 1647
BtgI CCRYGG 2 cut(s) 629, 710
BtrI CACGTC 1 cut(s) 1202
BtsCI GGATG 5 cut(s) 142, 403, 779, 1238, 1754
BveI ACCTGC 3 cut(s) 416, 1291, 1321
Cac8I GCNNGC 3 cut(s) 839, 1515, 1645
CciI TCATGA 1 cut(s) 100
CfoI GCGC 2 cut(s) 1470, 1513
Cfr10I RCCGGY 1 cut(s) 1643
Cfr13I GGNCC 4 cut(s) 1209, 1210, 1544, 1646
CseI GACGC 2 cut(s) 1091, 1747
Csp6I GTAC 6 cut(s) 15, 462, 573, 845, 860, 1656
CviAII CATG 5 cut(s) 101, 384, 711, 1579, 1653
CviQI GTAC 6 cut(s) 15, 462, 573, 845, 860, 1656
DdeI CTNAG 5 cut(s) 189, 1158, 1344, 1353, 1395
DpnI GATC 6 cut(s) 105, 329, 478, 753, 759, 817
DpnII GATC 6 cut(s) 103, 327, 476, 751, 757, 815
EaeI YGGCCR 1 cut(s) 1423
Eam1104I CTCTTC 2 cut(s) 683, 1240
EarI CTCTTC 2 cut(s) 683, 1240
EciI GGCGGA 1 cut(s) 1614
Eco130I CCWWGG 2 cut(s) 239, 710
Eco24I GRGCYC 2 cut(s) 417, 1213
Eco31I GGTCTC 2 cut(s) 157, 1589
Eco32I GATATC 2 cut(s) 31, 408
Eco47I GGWCC 1 cut(s) 1544
Eco57I CTGAAG 3 cut(s) 542, 597, 1199
Eco72I CACGTG 1 cut(s) 1631
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 1243, 1728
EcoRV GATATC 2 cut(s) 31, 408
EcoT14I CCWWGG 2 cut(s) 239, 710
EcoT38I GRGCYC 2 cut(s) 417, 1213
ErhI CCWWGG 2 cut(s) 239, 710
Esp3I CGTCTC 2 cut(s) 1074, 1351
FaeI CATG 5 cut(s) 104, 387, 714, 1582, 1656
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 2 cut(s) 330, 1691
FatI CATG 5 cut(s) 100, 383, 710, 1578, 1652
FauI CCCGC 2 cut(s) 434, 1173
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 6 cut(s) 432, 1020, 1155, 1287, 1350, 1497
FokI GGATG 5 cut(s) 149, 410, 766, 1225, 1741
FriOI GRGCYC 2 cut(s) 417, 1213
Fsp4HI GCNGC 6 cut(s) 432, 1020, 1155, 1287, 1350, 1497
FspBI CTAG 9 cut(s) 21, 156, 225, 240, 345, 465, 624, 1005, 1293
GlaI GCGC 2 cut(s) 1469, 1512
GluI GCNGC 6 cut(s) 432, 1020, 1155, 1287, 1350, 1497
GsuI CTGGAG 3 cut(s) 932, 960, 1098
HaeII RGCGCY 2 cut(s) 1471, 1514
HaeIII GGCC 3 cut(s) 1211, 1425, 1647
HapII CCGG 4 cut(s) 314, 541, 783, 1644
HgaI GACGC 2 cut(s) 1091, 1747
HhaI GCGC 2 cut(s) 1470, 1513
Hin1II CATG 5 cut(s) 104, 387, 714, 1582, 1656
Hin6I GCGC 2 cut(s) 1468, 1511
HinP1I GCGC 2 cut(s) 1468, 1511
HincII GTYRAC 1 cut(s) 1205
HindII GTYRAC 1 cut(s) 1205
HindIII AAGCTT 2 cut(s) 1252, 1691
HinfI GANTC 8 cut(s) 205, 901, 968, 1391, 1430, 1660, 1679, 1748
HpaII CCGG 4 cut(s) 314, 541, 783, 1644
HphI GGTGA 4 cut(s) 263, 403, 1130, 1345
Hpy166II GTNNAC 4 cut(s) 575, 845, 860, 1205
Hpy8I GTNNAC 4 cut(s) 575, 845, 860, 1205
HpyCH4III ACNGT 2 cut(s) 391, 1561
HpyCH4IV ACGT 3 cut(s) 130, 1201, 1630
HpyCH4V TGCA 8 cut(s) 387, 425, 431, 1286, 1369, 1517, 1614, 1704
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 431, 1349, 1502
HpyF3I CTNAG 5 cut(s) 189, 1158, 1344, 1353, 1395
HpySE526I ACGT 3 cut(s) 130, 1201, 1630
Hsp92II CATG 5 cut(s) 104, 387, 714, 1582, 1656
HspAI GCGC 2 cut(s) 1468, 1511
Kpn2I TCCGGA 1 cut(s) 782
KroI GCCGGC 1 cut(s) 1643
KroNI GCCGGC 1 cut(s) 1645
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 6 cut(s) 103, 327, 476, 751, 757, 815
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 6 cut(s) 443, 1006, 1141, 1298, 1336, 1483
LweI GCATC 2 cut(s) 1219, 1526
MaeI CTAG 9 cut(s) 21, 156, 225, 240, 345, 465, 624, 1005, 1293
MaeII ACGT 3 cut(s) 130, 1201, 1630
MaeIII GTNAC 4 cut(s) 251, 535, 934, 1561
MalI GATC 6 cut(s) 105, 329, 478, 753, 759, 817
MboI GATC 6 cut(s) 103, 327, 476, 751, 757, 815
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 2 cut(s) 417, 1213
MlsI TGGCCA 1 cut(s) 1425
MluNI TGGCCA 1 cut(s) 1425
MlyI GAGTC 2 cut(s) 214, 1673
MmeI TCCRAC 1 cut(s) 508
Mox20I TGGCCA 1 cut(s) 1425
MroI TCCGGA 1 cut(s) 782
MroNI GCCGGC 1 cut(s) 1643
MroXI GAANNNNTTC 2 cut(s) 719, 991
MscI TGGCCA 1 cut(s) 1425
MseI TTAA 4 cut(s) 210, 507, 738, 1256
MslI CAYNNNNRTG 1 cut(s) 1559
Msp20I TGGCCA 1 cut(s) 1425
MspI CCGG 4 cut(s) 314, 541, 783, 1644
MspR9I CCNGG 4 cut(s) 315, 541, 1245, 1730
Mva1269I GAATGC 1 cut(s) 1371
MvaI CCWGG 2 cut(s) 1245, 1730
MwoI GCNNNNNNNGC 4 cut(s) 230, 431, 1349, 1502
NaeI GCCGGC 1 cut(s) 1645
NciI CCSGG 2 cut(s) 315, 541
NcoI CCATGG 1 cut(s) 710
NdeII GATC 6 cut(s) 103, 327, 476, 751, 757, 815
NgoMIV GCCGGC 1 cut(s) 1643
NlaIII CATG 5 cut(s) 104, 387, 714, 1582, 1656
NlaIV GGNNCC 2 cut(s) 1211, 1545
NmuCI GTSAC 3 cut(s) 251, 535, 1561
NspI RCATGY 1 cut(s) 387
OliI CACNNNNGTG 1 cut(s) 1559
PagI TCATGA 1 cut(s) 100
PaqCI CACCTGC 3 cut(s) 416, 1291, 1321
PctI GAATGC 1 cut(s) 1371
PdiI GCCGGC 1 cut(s) 1645
PdmI GAANNNNTTC 2 cut(s) 719, 991
PfeI GAWTC 6 cut(s) 901, 968, 1391, 1430, 1660, 1748
PfoI TCCNGGA 1 cut(s) 1728
PkrI GCNGC 6 cut(s) 433, 1021, 1156, 1288, 1351, 1498
PleI GAGTC 2 cut(s) 213, 1673
PmaCI CACGTG 1 cut(s) 1631
PmlI CACGTG 1 cut(s) 1631
PpsI GAGTC 2 cut(s) 213, 1673
Ppu21I YACGTR 1 cut(s) 1631
PshAI GACNNNNGTC 1 cut(s) 1581
PshBI ATTAAT 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 1243, 1728
PspCI CACGTG 1 cut(s) 1631
PspGI CCWGG 2 cut(s) 1243, 1728
PspN4I GGNNCC 2 cut(s) 1211, 1545
PspOMI GGGCCC 1 cut(s) 1209
PspPI GGNCC 4 cut(s) 1209, 1210, 1544, 1646
PstI CTGCAG 1 cut(s) 1288
PsuI RGATCY 1 cut(s) 815
RsaI GTAC 6 cut(s) 16, 463, 574, 846, 861, 1657
RsaNI GTAC 6 cut(s) 15, 462, 573, 845, 860, 1656
RseI CAYNNNNRTG 1 cut(s) 1559
SaqAI TTAA 4 cut(s) 210, 507, 738, 1256
SatI GCNGC 6 cut(s) 432, 1020, 1155, 1287, 1350, 1497
Sau3AI GATC 6 cut(s) 103, 327, 476, 751, 757, 815
Sau96I GGNCC 4 cut(s) 1209, 1210, 1544, 1646
ScaI AGTACT 2 cut(s) 16, 463
SchI GAGTC 2 cut(s) 214, 1673
ScrFI CCNGG 4 cut(s) 315, 541, 1245, 1730
SduI GDGCHC 2 cut(s) 417, 1213
SfaNI GCATC 2 cut(s) 1219, 1526
SfcI CTRYAG 2 cut(s) 996, 1284
SinI GGWCC 1 cut(s) 1544
SmiMI CAYNNNNRTG 1 cut(s) 1559
SmlI CTYRAG 2 cut(s) 515, 724
SmoI CTYRAG 2 cut(s) 515, 724
SsiI CCGC 5 cut(s) 193, 441, 561, 1180, 1625
SspMI CTAG 9 cut(s) 21, 156, 225, 240, 345, 465, 624, 1005, 1293
StyD4I CCNGG 4 cut(s) 313, 539, 1243, 1728
StyI CCWWGG 2 cut(s) 239, 710
TaaI ACNGT 2 cut(s) 391, 1561
TaiI ACGT 3 cut(s) 133, 1204, 1633
TaqI TCGA 2 cut(s) 971, 1220
TatI WGTACW 3 cut(s) 14, 461, 859
TfiI GAWTC 6 cut(s) 901, 968, 1391, 1430, 1660, 1748
Tru1I TTAA 4 cut(s) 210, 507, 738, 1256
Tru9I TTAA 4 cut(s) 210, 507, 738, 1256
TseFI GTSAC 3 cut(s) 251, 535, 1561
TseI GCWGC 6 cut(s) 431, 1019, 1154, 1286, 1349, 1496
Tsp45I GTSAC 3 cut(s) 251, 535, 1561
TspDTI ATGAA 6 cut(s) 89, 153, 228, 978, 1107, 1227
TspGWI ACGGA 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 1544
VspI ATTAAT 1 cut(s) 738
XapI RAATTY 3 cut(s) 96, 705, 1262
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 1 cut(s) 387
XmaJI CCTAGG 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 719, 991
XspI CTAG 9 cut(s) 21, 156, 225, 240, 345, 465, 624, 1005, 1293
ZrmI AGTACT 2 cut(s) 16, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.