PAPA-1-like conserved region
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47350 AT2G47350 |
| fragaria_vesca | FvH4_5g39030 |
| malus_domestica | MD00G1140600.v1.1 MD03G1292700.v1.1 |
| prunus_persica | Prupe.8G265700_v2.0.a1 |
| pyrus_communis | pycom03g23200 pycom11g27340 |
| rosa_chinensis | RchiOBHm_Chr7g0241001 |
| rosa_laevigata | RLG00000000605 |
| rosa_multiflora | Rmu_sc0003187.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00219330 |
| rosa_rugosa | Rorug07G0341200 |
| rosa_samantha | Rh7AG496300 Rh7BG467600 Rh7CG513600 Rh7DG480800 |
| rosa_wichuraiana | Rw7G041920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1288 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| Acc36I | ACCTGC | 5 cut(s) | 170, 242, 1288, 1357, 1602 |
| AccI | GTMKAC | 2 cut(s) | 79, 599 |
| AccII | CGCG | 1 cut(s) | 1643 |
| AciI | CCGC | 5 cut(s) | 785, 1514, 1547, 1643, 1742 |
| AclI | AACGTT | 1 cut(s) | 71 |
| AcoI | YGGCCR | 1 cut(s) | 231 |
| AcsI | RAATTY | 3 cut(s) | 664, 714, 1413 |
| AcuI | CTGAAG | 3 cut(s) | 1152, 1202, 1352 |
| AfaI | GTAC | 5 cut(s) | 472, 553, 583, 1552, 1616 |
| AflII | CTTAAG | 1 cut(s) | 1709 |
| AflIII | ACRYGT | 1 cut(s) | 548 |
| AgsI | TTSAA | 4 cut(s) | 198, 577, 771, 1130 |
| AjnI | CCWGG | 4 cut(s) | 233, 322, 1240, 1728 |
| AluBI | AGCT | 8 cut(s) | 390, 396, 529, 1064, 1126, 1157, 1340, 1693 |
| AluI | AGCT | 8 cut(s) | 390, 396, 529, 1064, 1126, 1157, 1340, 1693 |
| Alw21I | GWGCWC | 1 cut(s) | 392 |
| Alw26I | GTCTC | 5 cut(s) | 166, 755, 948, 1348, 1586 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1330, 1397 |
| Ama87I | CYCGRG | 1 cut(s) | 752 |
| AoxI | GGCC | 3 cut(s) | 231, 561, 1540 |
| ApaI | GGGCCC | 1 cut(s) | 1544 |
| ApeKI | GCWGC | 5 cut(s) | 248, 941, 1324, 1346, 1493 |
| ApoI | RAATTY | 3 cut(s) | 664, 714, 1413 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 61, 93 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 728, 828, 991, 1191 |
| AspLEI | GCGC | 2 cut(s) | 861, 1643 |
| AspS9I | GGNCC | 4 cut(s) | 1212, 1540, 1541, 1646 |
| AsuHPI | GGTGA | 2 cut(s) | 111, 470 |
| AvaI | CYCGRG | 1 cut(s) | 752 |
| AvaII | GGWCC | 2 cut(s) | 1212, 1646 |
| BaeGI | GKGCMC | 1 cut(s) | 1544 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1542, 1575 |
| BalI | TGGCCA | 1 cut(s) | 233 |
| BanII | GRGCYC | 2 cut(s) | 392, 1544 |
| BauI | CACGAG | 1 cut(s) | 1651 |
| BbsI | GAAGAC | 2 cut(s) | 12, 1455 |
| Bbv12I | GWGCWC | 1 cut(s) | 392 |
| BbvCI | CCTCAGC | 2 cut(s) | 1341, 1398 |
| BbvI | GCAGC | 5 cut(s) | 260, 928, 1333, 1336, 1480 |
| BccI | CCATC | 7 cut(s) | 485, 863, 1112, 1169, 1294, 1531, 1532 |
| BceAI | ACGGC | 1 cut(s) | 656 |
| BciT130I | CCWGG | 4 cut(s) | 235, 324, 1242, 1730 |
| BclI | TGATCA | 1 cut(s) | 148 |
| BcoDI | GTCTC | 5 cut(s) | 166, 755, 948, 1348, 1586 |
| BfaI | CTAG | 6 cut(s) | 165, 354, 474, 633, 1290, 1383 |
| BfmI | CTRYAG | 5 cut(s) | 246, 942, 996, 1554, 1609 |
| BfrI | CTTAAG | 1 cut(s) | 1709 |
| BfuAI | ACCTGC | 5 cut(s) | 170, 242, 1288, 1357, 1602 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 856 |
| BglII | AGATCT | 1 cut(s) | 818 |
| BisI | GCNGC | 5 cut(s) | 249, 942, 1325, 1347, 1494 |
| BlsI | GCNGC | 5 cut(s) | 250, 943, 1326, 1348, 1495 |
| BmcAI | AGTACT | 1 cut(s) | 472 |
| Bme1390I | CCNGG | 4 cut(s) | 235, 324, 1242, 1730 |
| Bme18I | GGWCC | 2 cut(s) | 1212, 1646 |
| BmeT110I | CYCGRG | 1 cut(s) | 752 |
| BmgT120I | GGNCC | 4 cut(s) | 1212, 1540, 1541, 1646 |
| BmiI | GGNNCC | 4 cut(s) | 1214, 1542, 1647, 1648 |
| BmrFI | CCNGG | 4 cut(s) | 235, 324, 1242, 1730 |
| BmrI | ACTGGG | 2 cut(s) | 19, 1581 |
| BmsI | GCATC | 3 cut(s) | 178, 1034, 1222 |
| BmuI | ACTGGG | 2 cut(s) | 19, 1581 |
| BpiI | GAAGAC | 2 cut(s) | 12, 1455 |
| BpmI | CTGGAG | 1 cut(s) | 935 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1341, 1398 |
| BpuEI | CTTGAG | 3 cut(s) | 376, 515, 718 |
| BsaAI | YACGTR | 2 cut(s) | 551, 1755 |
| BsaBI | GATNNNNATC | 1 cut(s) | 675 |
| BsaI | GGTCTC | 2 cut(s) | 166, 1586 |
| BsaJI | CCNNGG | 4 cut(s) | 234, 638, 719, 1240 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 442, 472, 581, 611 |
| Bse1I | ACTGG | 4 cut(s) | 14, 827, 1020, 1587 |
| Bse8I | GATNNNNATC | 1 cut(s) | 675 |
| BseBI | CCWGG | 4 cut(s) | 235, 324, 1242, 1730 |
| BseDI | CCNNGG | 4 cut(s) | 234, 638, 719, 1240 |
| BseGI | GGATG | 4 cut(s) | 151, 302, 676, 1180 |
| BseJI | GATNNNNATC | 1 cut(s) | 675 |
| BseMII | CTCAG | 4 cut(s) | 1332, 1364, 1389, 1640 |
| BseNI | ACTGG | 4 cut(s) | 14, 827, 1020, 1587 |
| BseSI | GKGCMC | 1 cut(s) | 1544 |
| BseXI | GCAGC | 5 cut(s) | 260, 928, 1333, 1336, 1480 |
| BseYI | CCCAGC | 1 cut(s) | 1543 |
| BsgI | GTGCAG | 1 cut(s) | 1266 |
| Bsh1236I | CGCG | 1 cut(s) | 1643 |
| BshFI | GGCC | 3 cut(s) | 233, 563, 1542 |
| BsiHKAI | GWGCWC | 1 cut(s) | 392 |
| BsiHKCI | CYCGRG | 1 cut(s) | 752 |
| BslFI | GGGAC | 1 cut(s) | 1632 |
| BsmAI | GTCTC | 5 cut(s) | 166, 755, 948, 1348, 1586 |
| BsmBI | CGTCTC | 2 cut(s) | 948, 1348 |
| BsmFI | GGGAC | 1 cut(s) | 1632 |
| BsmI | GAATGC | 3 cut(s) | 181, 861, 1368 |
| BsnI | GGCC | 3 cut(s) | 233, 563, 1542 |
| Bso31I | GGTCTC | 2 cut(s) | 166, 1586 |
| BsoBI | CYCGRG | 1 cut(s) | 752 |
| Bsp120I | GGGCCC | 1 cut(s) | 1540 |
| Bsp1286I | GDGCHC | 2 cut(s) | 392, 1544 |
| Bsp143I | GATC | 2 cut(s) | 148, 818 |
| Bsp19I | CCATGG | 1 cut(s) | 719 |
| BspACI | CCGC | 5 cut(s) | 785, 1514, 1547, 1643, 1742 |
| BspANI | GGCC | 3 cut(s) | 233, 563, 1542 |
| BspCNI | CTCAG | 4 cut(s) | 1333, 1363, 1390, 1639 |
| BspFNI | CGCG | 1 cut(s) | 1643 |
| BspLI | GGNNCC | 4 cut(s) | 1214, 1542, 1647, 1648 |
| BspMAI | CTGCAG | 4 cut(s) | 250, 946, 1000, 1613 |
| BspMI | ACCTGC | 5 cut(s) | 170, 242, 1288, 1357, 1602 |
| BspQI | GCTCTTC | 1 cut(s) | 380 |
| BspTI | CTTAAG | 1 cut(s) | 1709 |
| BspTNI | GGTCTC | 2 cut(s) | 166, 1586 |
| BsrI | ACTGG | 4 cut(s) | 14, 827, 1020, 1587 |
| BssECI | CCNNGG | 4 cut(s) | 234, 638, 719, 1240 |
| BssMI | GATC | 2 cut(s) | 148, 818 |
| BssSI | CACGAG | 1 cut(s) | 1651 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2BI | CACGAG | 1 cut(s) | 1651 |
| Bst2UI | CCWGG | 4 cut(s) | 235, 324, 1242, 1730 |
| Bst4CI | ACNGT | 4 cut(s) | 35, 123, 1534, 1555 |
| Bst6I | CTCTTC | 4 cut(s) | 53, 380, 885, 1171 |
| BstAFI | CTTAAG | 1 cut(s) | 1709 |
| BstBAI | YACGTR | 2 cut(s) | 551, 1755 |
| BstC8I | GCNNGC | 2 cut(s) | 842, 1124 |
| BstDEI | CTNAG | 6 cut(s) | 852, 1341, 1350, 1398, 1626, 1683 |
| BstDSI | CCRYGG | 2 cut(s) | 638, 719 |
| BstF5I | GGATG | 4 cut(s) | 151, 302, 676, 1180 |
| BstFNI | CGCG | 1 cut(s) | 1643 |
| BstHHI | GCGC | 2 cut(s) | 861, 1643 |
| BstKTI | GATC | 2 cut(s) | 151, 821 |
| BstMAI | GTCTC | 5 cut(s) | 166, 755, 948, 1348, 1586 |
| BstMBI | GATC | 2 cut(s) | 148, 818 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 363, 856, 1346, 1499 |
| BstNI | CCWGG | 4 cut(s) | 235, 324, 1242, 1730 |
| BstSCI | CCNGG | 4 cut(s) | 233, 322, 1240, 1728 |
| BstSFI | CTRYAG | 5 cut(s) | 246, 942, 996, 1554, 1609 |
| BstSLI | GKGCMC | 1 cut(s) | 1544 |
| BstUI | CGCG | 1 cut(s) | 1643 |
| BstV1I | GCAGC | 5 cut(s) | 260, 928, 1333, 1336, 1480 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 1455 |
| BstX2I | RGATCY | 1 cut(s) | 818 |
| BstYI | RGATCY | 1 cut(s) | 818 |
| BsuRI | GGCC | 3 cut(s) | 233, 563, 1542 |
| BtgI | CCRYGG | 2 cut(s) | 638, 719 |
| BtsCI | GGATG | 4 cut(s) | 151, 302, 676, 1180 |
| BtsI | GCAGTG | 2 cut(s) | 49, 951 |
| BtsIMutI | CAGTG | 6 cut(s) | 49, 951, 1027, 1083, 1176, 1539 |
| BveI | ACCTGC | 5 cut(s) | 170, 242, 1288, 1357, 1602 |
| Cac8I | GCNNGC | 2 cut(s) | 842, 1124 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1330, 1397 |
| CfoI | GCGC | 2 cut(s) | 861, 1643 |
| Cfr13I | GGNCC | 4 cut(s) | 1212, 1540, 1541, 1646 |
| Csp6I | GTAC | 5 cut(s) | 471, 552, 582, 1551, 1615 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 520, 555 |
| CviAII | CATG | 3 cut(s) | 110, 720, 1248 |
| CviQI | GTAC | 5 cut(s) | 471, 552, 582, 1551, 1615 |
| DdeI | CTNAG | 6 cut(s) | 852, 1341, 1350, 1398, 1626, 1683 |
| DpnI | GATC | 2 cut(s) | 150, 820 |
| DpnII | GATC | 2 cut(s) | 148, 818 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| EaeI | YGGCCR | 1 cut(s) | 231 |
| Eam1104I | CTCTTC | 4 cut(s) | 53, 380, 885, 1171 |
| EarI | CTCTTC | 4 cut(s) | 53, 380, 885, 1171 |
| EciI | GGCGGA | 1 cut(s) | 1503 |
| Ecl136II | GAGCTC | 1 cut(s) | 390 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco24I | GRGCYC | 2 cut(s) | 392, 1544 |
| Eco31I | GGTCTC | 2 cut(s) | 166, 1586 |
| Eco32I | GATATC | 1 cut(s) | 417 |
| Eco47I | GGWCC | 2 cut(s) | 1212, 1646 |
| Eco53kI | GAGCTC | 1 cut(s) | 390 |
| Eco57I | CTGAAG | 3 cut(s) | 1152, 1202, 1352 |
| Eco88I | CYCGRG | 1 cut(s) | 752 |
| EcoICRI | GAGCTC | 1 cut(s) | 390 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1212, 1646 |
| EcoRI | GAATTC | 1 cut(s) | 714 |
| EcoRII | CCWGG | 4 cut(s) | 233, 322, 1240, 1728 |
| EcoRV | GATATC | 1 cut(s) | 417 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| EcoT38I | GRGCYC | 2 cut(s) | 392, 1544 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| Esp3I | CGTCTC | 2 cut(s) | 948, 1348 |
| FaeI | CATG | 3 cut(s) | 113, 723, 1251 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 351, 383 |
| FaqI | GGGAC | 1 cut(s) | 1632 |
| FatI | CATG | 3 cut(s) | 109, 719, 1247 |
| FauI | CCCGC | 3 cut(s) | 778, 1540, 1636 |
| FbaI | TGATCA | 1 cut(s) | 148 |
| FblI | GTMKAC | 2 cut(s) | 79, 599 |
| Fnu4HI | GCNGC | 5 cut(s) | 249, 942, 1325, 1347, 1494 |
| FokI | GGATG | 4 cut(s) | 158, 309, 683, 1187 |
| FriOI | GRGCYC | 2 cut(s) | 392, 1544 |
| Fsp4HI | GCNGC | 5 cut(s) | 249, 942, 1325, 1347, 1494 |
| FspBI | CTAG | 6 cut(s) | 165, 354, 474, 633, 1290, 1383 |
| GlaI | GCGC | 2 cut(s) | 860, 1642 |
| GluI | GCNGC | 5 cut(s) | 249, 942, 1325, 1347, 1494 |
| GsaI | CCCAGC | 1 cut(s) | 1547 |
| GsuI | CTGGAG | 1 cut(s) | 935 |
| HaeIII | GGCC | 3 cut(s) | 233, 563, 1542 |
| HhaI | GCGC | 2 cut(s) | 861, 1643 |
| Hin1II | CATG | 3 cut(s) | 113, 723, 1251 |
| Hin6I | GCGC | 2 cut(s) | 859, 1641 |
| HinP1I | GCGC | 2 cut(s) | 859, 1641 |
| HincII | GTYRAC | 2 cut(s) | 80, 1162 |
| HindII | GTYRAC | 2 cut(s) | 80, 1162 |
| HindIII | AAGCTT | 1 cut(s) | 394 |
| HphI | GGTGA | 2 cut(s) | 111, 470 |
| Hpy166II | GTNNAC | 3 cut(s) | 80, 600, 1162 |
| Hpy188III | TCNNGA | 8 cut(s) | 633, 735, 754, 866, 914, 1059, 1290, 1424 |
| Hpy8I | GTNNAC | 3 cut(s) | 80, 600, 1162 |
| Hpy99I | CGWCG | 3 cut(s) | 81, 962, 965 |
| HpyAV | CCTTC | 9 cut(s) | 150, 353, 696, 718, 803, 1124, 1144, 1226, 1369 |
| HpyCH4III | ACNGT | 4 cut(s) | 35, 123, 1534, 1555 |
| HpyCH4IV | ACGT | 3 cut(s) | 71, 550, 1754 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 363, 856, 1346, 1499 |
| HpyF3I | CTNAG | 6 cut(s) | 852, 1341, 1350, 1398, 1626, 1683 |
| HpySE526I | ACGT | 3 cut(s) | 71, 550, 1754 |
| Hsp92II | CATG | 3 cut(s) | 113, 723, 1251 |
| HspAI | GCGC | 2 cut(s) | 859, 1641 |
| KflI | GGGWCCC | 1 cut(s) | 1646 |
| Ksp22I | TGATCA | 1 cut(s) | 148 |
| Kzo9I | GATC | 2 cut(s) | 148, 818 |
| LguI | GCTCTTC | 1 cut(s) | 380 |
| LmnI | GCTCC | 1 cut(s) | 1321 |
| Lsp1109I | GCAGC | 5 cut(s) | 260, 928, 1333, 1336, 1480 |
| LweI | GCATC | 3 cut(s) | 178, 1034, 1222 |
| MaeI | CTAG | 6 cut(s) | 165, 354, 474, 633, 1290, 1383 |
| MaeII | ACGT | 3 cut(s) | 71, 550, 1754 |
| MaeIII | GTNAC | 4 cut(s) | 117, 544, 1558, 1686 |
| MalI | GATC | 2 cut(s) | 150, 820 |
| MboI | GATC | 2 cut(s) | 148, 818 |
| MflI | RGATCY | 1 cut(s) | 818 |
| MhlI | GDGCHC | 2 cut(s) | 392, 1544 |
| MlsI | TGGCCA | 1 cut(s) | 233 |
| MluNI | TGGCCA | 1 cut(s) | 233 |
| MlyI | GAGTC | 3 cut(s) | 125, 431, 1157 |
| MmeI | TCCRAC | 3 cut(s) | 1014, 1029, 1646 |
| Mox20I | TGGCCA | 1 cut(s) | 233 |
| MroXI | GAANNNNTTC | 4 cut(s) | 728, 828, 991, 1191 |
| MscI | TGGCCA | 1 cut(s) | 233 |
| Msp20I | TGGCCA | 1 cut(s) | 233 |
| MspA1I | CMGCKG | 3 cut(s) | 785, 1547, 1742 |
| MspCI | CTTAAG | 1 cut(s) | 1709 |
| MspR9I | CCNGG | 4 cut(s) | 235, 324, 1242, 1730 |
| Mva1269I | GAATGC | 3 cut(s) | 181, 861, 1368 |
| MvaI | CCWGG | 4 cut(s) | 235, 324, 1242, 1730 |
| MvnI | CGCG | 1 cut(s) | 1643 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 363, 856, 1346, 1499 |
| NcoI | CCATGG | 1 cut(s) | 719 |
| NdeII | GATC | 2 cut(s) | 148, 818 |
| NlaIII | CATG | 3 cut(s) | 113, 723, 1251 |
| NlaIV | GGNNCC | 4 cut(s) | 1214, 1542, 1647, 1648 |
| NmuCI | GTSAC | 3 cut(s) | 117, 544, 1686 |
| PaqCI | CACCTGC | 1 cut(s) | 1288 |
| PciSI | GCTCTTC | 1 cut(s) | 380 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 82 |
| PctI | GAATGC | 3 cut(s) | 181, 861, 1368 |
| PdmI | GAANNNNTTC | 4 cut(s) | 728, 828, 991, 1191 |
| PfeI | GAWTC | 7 cut(s) | 92, 904, 968, 1192, 1388, 1427, 1679 |
| PfoI | TCCNGGA | 1 cut(s) | 1728 |
| PkrI | GCNGC | 5 cut(s) | 250, 943, 1326, 1348, 1495 |
| PleI | GAGTC | 3 cut(s) | 124, 430, 1157 |
| PpsI | GAGTC | 3 cut(s) | 124, 430, 1157 |
| Ppu21I | YACGTR | 2 cut(s) | 551, 1755 |
| PpuMI | RGGWCCY | 2 cut(s) | 1212, 1646 |
| Psp124BI | GAGCTC | 1 cut(s) | 392 |
| Psp1406I | AACGTT | 1 cut(s) | 71 |
| Psp5II | RGGWCCY | 2 cut(s) | 1212, 1646 |
| Psp6I | CCWGG | 4 cut(s) | 233, 322, 1240, 1728 |
| PspFI | CCCAGC | 1 cut(s) | 1543 |
| PspGI | CCWGG | 4 cut(s) | 233, 322, 1240, 1728 |
| PspN4I | GGNNCC | 4 cut(s) | 1214, 1542, 1647, 1648 |
| PspOMI | GGGCCC | 1 cut(s) | 1540 |
| PspPI | GGNCC | 4 cut(s) | 1212, 1540, 1541, 1646 |
| PspPPI | RGGWCCY | 2 cut(s) | 1212, 1646 |
| PstI | CTGCAG | 4 cut(s) | 250, 946, 1000, 1613 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1330, 1397 |
| PsuI | RGATCY | 1 cut(s) | 818 |
| RsaI | GTAC | 5 cut(s) | 472, 553, 583, 1552, 1616 |
| RsaNI | GTAC | 5 cut(s) | 471, 552, 582, 1551, 1615 |
| SacI | GAGCTC | 1 cut(s) | 392 |
| SalI | GTCGAC | 1 cut(s) | 78 |
| SapI | GCTCTTC | 1 cut(s) | 380 |
| SatI | GCNGC | 5 cut(s) | 249, 942, 1325, 1347, 1494 |
| Sau3AI | GATC | 2 cut(s) | 148, 818 |
| Sau96I | GGNCC | 4 cut(s) | 1212, 1540, 1541, 1646 |
| SbfI | CCTGCAGG | 1 cut(s) | 1613 |
| ScaI | AGTACT | 1 cut(s) | 472 |
| SchI | GAGTC | 3 cut(s) | 125, 431, 1157 |
| ScrFI | CCNGG | 4 cut(s) | 235, 324, 1242, 1730 |
| SdaI | CCTGCAGG | 1 cut(s) | 1613 |
| SduI | GDGCHC | 2 cut(s) | 392, 1544 |
| SfaNI | GCATC | 3 cut(s) | 178, 1034, 1222 |
| SfcI | CTRYAG | 5 cut(s) | 246, 942, 996, 1554, 1609 |
| SinI | GGWCC | 2 cut(s) | 1212, 1646 |
| SmlI | CTYRAG | 4 cut(s) | 391, 530, 733, 1709 |
| SmoI | CTYRAG | 4 cut(s) | 391, 530, 733, 1709 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1613 |
| SsiI | CCGC | 5 cut(s) | 785, 1514, 1547, 1643, 1742 |
| SspMI | CTAG | 6 cut(s) | 165, 354, 474, 633, 1290, 1383 |
| SstI | GAGCTC | 1 cut(s) | 392 |
| StyD4I | CCNGG | 4 cut(s) | 233, 322, 1240, 1728 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 4 cut(s) | 35, 123, 1534, 1555 |
| TaiI | ACGT | 3 cut(s) | 74, 553, 1757 |
| TaqI | TCGA | 4 cut(s) | 79, 85, 616, 1058 |
| TaqII | GACCGA | 1 cut(s) | 1409 |
| TatI | WGTACW | 1 cut(s) | 470 |
| TfiI | GAWTC | 7 cut(s) | 92, 904, 968, 1192, 1388, 1427, 1679 |
| TscAI | CASTG | 6 cut(s) | 49, 951, 1027, 1090, 1176, 1539 |
| TseFI | GTSAC | 3 cut(s) | 117, 544, 1686 |
| TseI | GCWGC | 5 cut(s) | 248, 941, 1324, 1346, 1493 |
| Tsp45I | GTSAC | 3 cut(s) | 117, 544, 1686 |
| TspDTI | ATGAA | 7 cut(s) | 84, 237, 416, 900, 981, 1098, 1236 |
| TspGWI | ACGGA | 4 cut(s) | 293, 343, 602, 1284 |
| TspRI | CASTG | 6 cut(s) | 49, 951, 1027, 1090, 1176, 1539 |
| Vha464I | CTTAAG | 1 cut(s) | 1709 |
| VpaK11BI | GGWCC | 2 cut(s) | 1212, 1646 |
| XapI | RAATTY | 3 cut(s) | 664, 714, 1413 |
| XbaI | TCTAGA | 2 cut(s) | 632, 1289 |
| XmiI | GTMKAC | 2 cut(s) | 79, 599 |
| XmnI | GAANNNNTTC | 4 cut(s) | 728, 828, 991, 1191 |
| XspI | CTAG | 6 cut(s) | 165, 354, 474, 633, 1290, 1383 |
| ZrmI | AGTACT | 1 cut(s) | 472 |