Rh7CG513600

PAPA-1-like conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012739
Physical Location & Seq
Forward (+)
69326317 .. 69330594
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG513600.1

Sequence Viewer

Length: 1488 bp
ATGGAAGAGTTTAGTACTCCTAGATTGGATATCAGCAATGCTGTGAGAAAGAAAAGAAGTCAAACCTTTCGCCGACCTCGACCTGATTCACAACTATCACCTGAAATTCATGATCAGTCGCCGTTGTCATCACGTTCGGATGAACTGAGCAAGGTCTCCAGTGATGAGAATGCTGGTTGTGATACCAATTCTAAGCGGAAAGAATTGAGTCTTAATGAATGTATGGCTAGAGTTTCTTCTGCTGGGGGTACTGGTGAAAAACCCCACATAAAAGATAGGAAGGATAGAGGGTTCAATTCATTTTACAAAAATGAGCCGGGACGAAATGGGATCAGTAATAAACGCTCTAGCGAAGGTGTCCTTGCCCCTGCTAATTGGAAAAGCACAAGCACAGTGAAGGATGGTTTGATATCAGAGTCAAGAAGTGCAGGTGCAGCTAATGGTGGGCATGGTGGAAGTCCGAGTACTAGGCTGTCAGGATCAGATGGATTTGGAAATGAGAACAAGGTTAAAAAGGTCAAGCTCAAGGTTGGTGGTGTTACCCGGACAATTCAAGCCAATTCTGCAGTCAATGGTACAAAAGAGGAGGGGTCTTCAACAAAGTTATCTCGATCTTCAGATGTCTCTAAACCACGGCAGAAGCAAAATCTTCTGTCAAATTCAGATGAGAATCATTCCCCTTTAGATAGGAAGAGTGGTTTGAAAGGAATTCCATGGAAGGATTTCTCAAGAAGTGGTATTAATCTTGGGAAGGATCTGGATCAGTCTACAATGGTTCGGACATCCGGAAAGAACAGCTCTGGAAAGGAAGGAGATAGATCTGAACCAGTTCGTAAGAGCAAGCGTGTACCCAAGAGGCGTGTACTTGATGGAGAGTTTGGAGACGATGAGGAAGATGATGAGATTCGGTATCTGGAGAAACTCAAAACATCTAAGGTTACTGGAGGATTTAGAGAAGAAGATGATGAAGAGTCGAGCAGGAAACATAGAAAACTTTCTGTAGTTTCTAGTATTGATAATGGTGGTCCATCAAGGTCAGGCAAAGACCTAAAGAGGAAGTCAAGAACTGATAGAGTATCAGGAGATGCTGATTATCAAGAAGAAGATTCATTATCTGATGGTGAGCTTGAAGATAAAAAGAAGCAGAAGAAGGAAGTTGTTGAGCCTTTGTTAGATGGTAAGAGGGAAATGACCCTCACAACACGTCAACGGGCCCTTCAGTCAAGCAAAGATGCCTCTTCATCCCCTGGTTCAAGCTTAATTGAATTTCCGAATGGATTACCACCTGCACCACCTAGAAAACAAAAAGAGAAATCTACAGAATATGACCAGCAGGTGAAGAAAGCTGAGGCTGCTCAGAGACGAAGAATGCAAATTGAGAAGGCTGCTAAGGAATCTGAGGTATGCTTTGCTTTTTATGTTTCATCTTCTTTTAATTACTTTCAAGCTGTAGAAGCGTTAATCATCTTTTATGTATCTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAPA-1 zf-HIT

Protein Analysis

495

Amino Acids

54.69

Weight (kDa)

9.44

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47350 AT2G47350
fragaria_vesca FvH4_5g39030
malus_domestica MD00G1140600.v1.1 MD03G1292700.v1.1
prunus_persica Prupe.8G265700_v2.0.a1
pyrus_communis pycom03g23200 pycom11g27340
rosa_chinensis RchiOBHm_Chr7g0241001
rosa_laevigata RLG00000000605
rosa_multiflora Rmu_sc0003187.1_g000010
rosa_roxburghii Rroxscaffold_3G00219330
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7AG496300 Rh7BG467600 Rh7CG513600 Rh7DG480800
rosa_wichuraiana Rw7G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 419, 1294, 1324
Acc36I ACCTGC 3 cut(s) 419, 1294, 1324
AccI GTMKAC 1 cut(s) 767
AccIII TCCGGA 1 cut(s) 785
AciI CCGC 1 cut(s) 196
AclWI GGATC 4 cut(s) 338, 487, 762, 768
AcsI RAATTY 4 cut(s) 105, 658, 708, 1265
AcuI CTGAAG 2 cut(s) 600, 1202
AfaI GTAC 6 cut(s) 16, 250, 466, 577, 849, 864
AflIII ACRYGT 1 cut(s) 1202
AgsI TTSAA 8 cut(s) 295, 554, 597, 703, 1130, 1254, 1265, 1445
AjiI CACGTC 1 cut(s) 1205
AjnI CCWGG 1 cut(s) 1246
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 7 cut(s) 437, 523, 798, 1126, 1257, 1346, 1448
AluI AGCT 7 cut(s) 437, 523, 798, 1126, 1257, 1346, 1448
Alw26I GTCTC 4 cut(s) 160, 628, 876, 1354
AlwI GGATC 4 cut(s) 338, 487, 762, 768
Aor13HI TCCGGA 1 cut(s) 785
AoxI GGCC 1 cut(s) 1212
ApaI GGGCCC 1 cut(s) 1216
ApeKI GCWGC 3 cut(s) 434, 1352, 1385
ApoI RAATTY 4 cut(s) 105, 658, 708, 1265
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 3 cut(s) 722, 828, 994
AspS9I GGNCC 3 cut(s) 1025, 1212, 1213
AsuC2I CCSGG 2 cut(s) 318, 544
AsuHPI GGTGA 4 cut(s) 90, 266, 1133, 1348
AvaII GGWCC 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 1216
BanII GRGCYC 1 cut(s) 1216
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BbsI GAAGAC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 1347
BbvI GCAGC 3 cut(s) 446, 1339, 1372
BccI CCATC 6 cut(s) 395, 479, 863, 1036, 1112, 1169
BceAI ACGGC 2 cut(s) 106, 650
BciT130I CCWGG 1 cut(s) 1248
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 2 cut(s) 318, 544
BcoDI GTCTC 4 cut(s) 160, 628, 876, 1354
BfaI CTAG 6 cut(s) 21, 228, 348, 468, 1008, 1296
BfmI CTRYAG 4 cut(s) 564, 999, 1317, 1449
BfuAI ACCTGC 3 cut(s) 419, 1294, 1324
BglII AGATCT 1 cut(s) 818
BisI GCNGC 3 cut(s) 435, 1353, 1386
BlsI GCNGC 3 cut(s) 436, 1354, 1387
BmcAI AGTACT 2 cut(s) 16, 466
Bme1390I CCNGG 3 cut(s) 318, 544, 1248
Bme18I GGWCC 1 cut(s) 1025
BmgBI CACGTC 1 cut(s) 1205
BmgT120I GGNCC 3 cut(s) 1025, 1212, 1213
BmiI GGNNCC 1 cut(s) 1214
BmrFI CCNGG 3 cut(s) 318, 544, 1248
BmsI GCATC 2 cut(s) 1075, 1222
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 3 cut(s) 142, 935, 963
Bpu10I CCTNAGC 2 cut(s) 1347, 1389
BpuEI CTTGAG 2 cut(s) 509, 712
BpuMI CCSGG 2 cut(s) 318, 544
BsaBI GATNNNNATC 2 cut(s) 669, 759
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 632, 713, 1246
BsaWI WCCGGW 1 cut(s) 785
Bse1I ACTGG 4 cut(s) 159, 256, 827, 946
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 669, 759
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 1 cut(s) 1248
BseDI CCNNGG 3 cut(s) 632, 713, 1246
BseGI GGATG 4 cut(s) 145, 406, 782, 1241
BseJI GATNNNNATC 2 cut(s) 669, 759
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 4 cut(s) 137, 1338, 1370, 1389
BseNI ACTGG 4 cut(s) 159, 256, 827, 946
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 1216
BseXI GCAGC 3 cut(s) 446, 1339, 1372
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 3 cut(s) 447, 453, 1272
BshFI GGCC 1 cut(s) 1214
BsiSI CCGG 3 cut(s) 317, 544, 786
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 4 cut(s) 160, 628, 876, 1354
BsmBI CGTCTC 2 cut(s) 876, 1354
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 2 cut(s) 175, 1374
BsnI GGCC 1 cut(s) 1214
Bso31I GGTCTC 1 cut(s) 160
Bsp120I GGGCCC 1 cut(s) 1212
Bsp1286I GDGCHC 1 cut(s) 1216
Bsp13I TCCGGA 1 cut(s) 785
Bsp143I GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 1214
BspCNI CTCAG 4 cut(s) 138, 1339, 1369, 1390
BspEI TCCGGA 1 cut(s) 785
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 1214
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 3 cut(s) 419, 1294, 1324
BspPI GGATC 4 cut(s) 338, 487, 762, 768
BspTNI GGTCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 4 cut(s) 159, 256, 827, 946
BssECI CCNNGG 3 cut(s) 632, 713, 1246
BssMI GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 1248
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 3 cut(s) 686, 963, 1243
BstC8I GCNNGC 1 cut(s) 842
BstDEI CTNAG 7 cut(s) 146, 192, 933, 1347, 1356, 1389, 1398
BstDSI CCRYGG 2 cut(s) 632, 713
BstF5I GGATG 4 cut(s) 145, 406, 782, 1241
BstKTI GATC 7 cut(s) 115, 333, 482, 614, 757, 763, 821
BstMAI GTCTC 4 cut(s) 160, 628, 876, 1354
BstMBI GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
BstMWI GCNNNNNNNGC 4 cut(s) 434, 563, 1352, 1454
BstNI CCWGG 1 cut(s) 1248
BstSCI CCNGG 3 cut(s) 316, 542, 1246
BstSFI CTRYAG 4 cut(s) 564, 999, 1317, 1449
BstSLI GKGCMC 1 cut(s) 1216
BstV1I GCAGC 3 cut(s) 446, 1339, 1372
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 2 cut(s) 754, 818
BstYI RGATCY 2 cut(s) 754, 818
BsuRI GGCC 1 cut(s) 1214
BtgI CCRYGG 2 cut(s) 632, 713
BtrI CACGTC 1 cut(s) 1205
BtsCI GGATG 4 cut(s) 145, 406, 782, 1241
BtsIMutI CAGTG 2 cut(s) 166, 399
BveI ACCTGC 3 cut(s) 419, 1294, 1324
Cac8I GCNNGC 1 cut(s) 842
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 1025, 1212, 1213
Csp6I GTAC 6 cut(s) 15, 249, 465, 576, 848, 863
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 3 cut(s) 110, 449, 714
CviQI GTAC 6 cut(s) 15, 249, 465, 576, 848, 863
DdeI CTNAG 7 cut(s) 146, 192, 933, 1347, 1356, 1389, 1398
DpnI GATC 7 cut(s) 114, 332, 481, 613, 756, 762, 820
DpnII GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
Eam1104I CTCTTC 3 cut(s) 686, 963, 1243
EarI CTCTTC 3 cut(s) 686, 963, 1243
Eco130I CCWWGG 1 cut(s) 713
Eco24I GRGCYC 1 cut(s) 1216
Eco31I GGTCTC 1 cut(s) 160
Eco32I GATATC 2 cut(s) 31, 411
Eco47I GGWCC 1 cut(s) 1025
Eco57I CTGAAG 2 cut(s) 600, 1202
EcoO109I RGGNCCY 1 cut(s) 1213
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 1246
EcoRV GATATC 2 cut(s) 31, 411
EcoT14I CCWWGG 1 cut(s) 713
EcoT38I GRGCYC 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 713
Esp3I CGTCTC 2 cut(s) 876, 1354
FaeI CATG 3 cut(s) 113, 452, 717
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 333
FatI CATG 3 cut(s) 109, 448, 713
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 3 cut(s) 435, 1353, 1386
FokI GGATG 4 cut(s) 152, 413, 769, 1228
FriOI GRGCYC 1 cut(s) 1216
Fsp4HI GCNGC 3 cut(s) 435, 1353, 1386
FspBI CTAG 6 cut(s) 21, 228, 348, 468, 1008, 1296
GluI GCNGC 3 cut(s) 435, 1353, 1386
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 3 cut(s) 142, 935, 963
HaeIII GGCC 1 cut(s) 1214
HapII CCGG 3 cut(s) 317, 544, 786
Hin1II CATG 3 cut(s) 113, 452, 717
HincII GTYRAC 1 cut(s) 1208
HindII GTYRAC 1 cut(s) 1208
HindIII AAGCTT 1 cut(s) 1255
HinfI GANTC 8 cut(s) 86, 208, 416, 670, 904, 971, 1106, 1394
HpaII CCGG 3 cut(s) 317, 544, 786
HphI GGTGA 4 cut(s) 90, 266, 1133, 1348
Hpy166II GTNNAC 4 cut(s) 768, 848, 863, 1208
Hpy8I GTNNAC 4 cut(s) 768, 848, 863, 1208
HpyAV CCTTC 9 cut(s) 274, 347, 391, 712, 745, 803, 1144, 1226, 1375
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 133, 1204
HpyCH4V TGCA 5 cut(s) 428, 434, 566, 1289, 1372
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 563, 1352, 1454
HpyF3I CTNAG 7 cut(s) 146, 192, 933, 1347, 1356, 1389, 1398
HpySE526I ACGT 2 cut(s) 133, 1204
Hsp92II CATG 3 cut(s) 113, 452, 717
Kpn2I TCCGGA 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
Lsp1109I GCAGC 3 cut(s) 446, 1339, 1372
LweI GCATC 2 cut(s) 1075, 1222
MaeI CTAG 6 cut(s) 21, 228, 348, 468, 1008, 1296
MaeII ACGT 2 cut(s) 133, 1204
MaeIII GTNAC 2 cut(s) 538, 937
MalI GATC 7 cut(s) 114, 332, 481, 613, 756, 762, 820
MboI GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
MflI RGATCY 2 cut(s) 754, 818
MhlI GDGCHC 1 cut(s) 1216
MlyI GAGTC 3 cut(s) 217, 425, 980
MroI TCCGGA 1 cut(s) 785
MroXI GAANNNNTTC 3 cut(s) 722, 828, 994
MseI TTAA 6 cut(s) 213, 510, 741, 1259, 1434, 1460
MspI CCGG 3 cut(s) 317, 544, 786
MspR9I CCNGG 3 cut(s) 318, 544, 1248
Mva1269I GAATGC 2 cut(s) 175, 1374
MvaI CCWGG 1 cut(s) 1248
MwoI GCNNNNNNNGC 4 cut(s) 434, 563, 1352, 1454
NciI CCSGG 2 cut(s) 318, 544
NcoI CCATGG 1 cut(s) 713
NdeII GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
NlaIII CATG 3 cut(s) 113, 452, 717
NlaIV GGNNCC 1 cut(s) 1214
PagI TCATGA 1 cut(s) 109
PaqCI CACCTGC 3 cut(s) 419, 1294, 1324
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PctI GAATGC 2 cut(s) 175, 1374
PdmI GAANNNNTTC 3 cut(s) 722, 828, 994
PfeI GAWTC 5 cut(s) 86, 670, 904, 1106, 1394
PkrI GCNGC 3 cut(s) 436, 1354, 1387
PleI GAGTC 3 cut(s) 216, 424, 979
PpsI GAGTC 3 cut(s) 216, 424, 979
PshBI ATTAAT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 1246
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 1246
PspN4I GGNNCC 1 cut(s) 1214
PspOMI GGGCCC 1 cut(s) 1212
PspPI GGNCC 3 cut(s) 1025, 1212, 1213
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 2 cut(s) 754, 818
RsaI GTAC 6 cut(s) 16, 250, 466, 577, 849, 864
RsaNI GTAC 6 cut(s) 15, 249, 465, 576, 848, 863
SaqAI TTAA 6 cut(s) 213, 510, 741, 1259, 1434, 1460
SatI GCNGC 3 cut(s) 435, 1353, 1386
Sau3AI GATC 7 cut(s) 112, 330, 479, 611, 754, 760, 818
Sau96I GGNCC 3 cut(s) 1025, 1212, 1213
ScaI AGTACT 2 cut(s) 16, 466
SchI GAGTC 3 cut(s) 217, 425, 980
ScrFI CCNGG 3 cut(s) 318, 544, 1248
SduI GDGCHC 1 cut(s) 1216
SfaNI GCATC 2 cut(s) 1075, 1222
SfcI CTRYAG 4 cut(s) 564, 999, 1317, 1449
SinI GGWCC 1 cut(s) 1025
SmlI CTYRAG 2 cut(s) 524, 727
SmoI CTYRAG 2 cut(s) 524, 727
SsiI CCGC 1 cut(s) 196
SspMI CTAG 6 cut(s) 21, 228, 348, 468, 1008, 1296
StyD4I CCNGG 3 cut(s) 316, 542, 1246
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 136, 1207
TaqI TCGA 3 cut(s) 79, 610, 974
TatI WGTACW 3 cut(s) 14, 464, 862
TfiI GAWTC 5 cut(s) 86, 670, 904, 1106, 1394
Tru1I TTAA 6 cut(s) 213, 510, 741, 1259, 1434, 1460
Tru9I TTAA 6 cut(s) 213, 510, 741, 1259, 1434, 1460
TscAI CASTG 2 cut(s) 166, 399
TseI GCWGC 3 cut(s) 434, 1352, 1385
TspDTI ATGAA 8 cut(s) 98, 156, 231, 288, 981, 1098, 1230, 1413
TspRI CASTG 2 cut(s) 166, 399
VpaK11BI GGWCC 1 cut(s) 1025
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 4 cut(s) 105, 658, 708, 1265
XmiI GTMKAC 1 cut(s) 767
XmnI GAANNNNTTC 3 cut(s) 722, 828, 994
XspI CTAG 6 cut(s) 21, 228, 348, 468, 1008, 1296
ZrmI AGTACT 2 cut(s) 16, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.