RLG00000000605

PAPA-1-like conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012739
Physical Location & Seq
Reverse (-)
2470354 .. 2474033
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000605

Sequence Viewer

Length: 2079 bp
ATGGTGAACGCCAAGATTATTAGCCTTCCTCTCTTCTCCTTTACCACCACCACCTCCTTTCTCTCTTTCTCTCACATTACCCTAAATACTCCAAACTCTTCTATCCCTAACCCTAATTCCCTTATATCTCTATACATCCAAAACCAGACTCCACCCTCTTCTTTTCGCTCACCCAAAACCCAATTCTCTTTCTCTCTCGTCTCTCTGGGTTTTGCTTCCTCTCTCCAAAGGTCTACGCTTTCTTACAGTTTTGGGATTTTGCTGCGCGCCCAATTTCTCAAGGATTTTCGGCATTACTGGAGTACTAGTGCCCTCATGGAAGAGTTTAGTACTCCTAGATTGGATATCAGCAATGCTGTGAGAAAGAAAAGAAGTCAAACCTTTCGCCGACCTCGACCTGATTCACAACCATCACCTGAAATTCATGATCAGTCGCCTTTGTCATCACGTTCGGATGAACTGAGCAAGGTCTCCAGTGATGAGAATGCTGGTTGTGATACCAATTCTAAGCGGAAAGAATTGAGTCTTAATGAATGTATGGCTAGAGTTTCTTCTGTTGGGGGTAATGGTGAAAAGCCCCACATAAAAGATAGGAAGGATAGAGGGTTCAATTCATTTTACAATAATGAGCCGGGACGAAATGGGATCAGTAATAAACGCTCTAGCGAAGGTGTCCTTGCTCCCGCTAATTGGAAAAGCACAAGCACAGTGAAGGATGGTTTGATATCAGAGTCAAGAAGTGCAGGTGCAGCTAATGGTGGGCATGGTGGAAGTCTGAGTACTAGGCTGTCAGGATCAGATGGATTTGGAAATGAGAACAAGGTTAAAAAGGTCAAGCTCAAGGTGGGTGGTGTGACACAGACAATTCAAGCCAATTCTGCAGTCAATGGTACAAAAGAGGAAGGGTCTTCAATGAAGTTGTCTCGATCTTCAGATGTCTCTAAACCACGGCAGAAGCAAAATCTTCTGTCAAATTCAGATGGGAATCATTCCCCTTTAGATAGGAAGAGTGGTTTGAAAGGAATTCCATGGAAGGATTTCTCAAGAAGTGGTATTAATCTTGGGAAGGATCTGGATCAGTCTACAATGGTTCGGACGTCCGGAAAGAACAGCTCTGGAAAGGAAGGAGATAGATCTGAGCCAGTTCGTAAGAGCAAGCGTGTACCCAAGAGGCGTGTACTTGATGGAGAGTTTGGAGACGATGAGGAAGATGATGAGATTCGGTATCTGGAGAAACTCAAAACATCTAAGGTTGCTGGAGGATTTAGAGAAGAAGATGATGAAGAGTCGAGCAGGAAACATAGAAAACTTTCTGTAGTTTCTAGTATTGATAATGGTGGTCCATCAAGGTCAGGCAAAGACCTAAAGAGGAAGTCAAGACCTGATAGAGTATCAGGAGACGCTGATTATGAAGAAGAAGATTCATTATCTGATGGTGAGCTTGAAGGTAAAAAGAAGCAGAAGAAGGAAGCTGTTGAGCCTTTGTTAGATGGTAAGAGGGAAATAACCCTCACAACACGTCAACGGGCGCTTCAGTCGAGCAAAGATGCCTCTTCATCCCCTGGTTCAAGCTTAATTGAATTTCCGAATGGATTACCACCTGCACCACCTAGAAAACAAAAAGAGAAATCTACAGAATATGACCAGCAGGTGAAGAAAGCTGAGGCTGCTCAGAGACGAAGAACGCAAATTGAGAAGGCTAATAGGGAATCTGAGGAGGAGGCTATTAGAAAAATACTTGGCCAAGATTCTAGTAGGAAAAAGAAGGAAGACAAAATAAAGAAGCGCCAAGAAGAACTGGCACAGGAGAAGGCTGCTAATGCTTTGGCGCTTGCATCAAGCACCATCAGATATGTGATGGGCCCAACAGGAACTACAGTAACATTCCCAGATGATATGGGTCTCCCCTGTTTATTTGACCCTAAACCTCGCGGTTATCCTCCTCCGCGTGAGAAATGTGCGGGCCCATCATGTATGAATCCCTACAAGTATAGGGATTCTAAGTCAAAGCTTCCTCTTTGCAGTCTTGGGTGCTACAAGGCTGTCCAGGAAAAGACGCAAGCAGAAACTACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAPA-1 zf-HIT

Protein Analysis

693

Amino Acids

76.31

Weight (kDa)

9.61

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPA-1 PF04795 549 - 633 2.4e-20 PAPA-1-like conserved region
zf-HIT PF04438 649 - 680 5.9e-07 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47350 AT2G47350
fragaria_vesca FvH4_5g39030
malus_domestica MD00G1140600.v1.1 MD03G1292700.v1.1
prunus_persica Prupe.8G265700_v2.0.a1
pyrus_communis pycom03g23200 pycom11g27340
rosa_chinensis RchiOBHm_Chr7g0241001
rosa_laevigata RLG00000000605
rosa_multiflora Rmu_sc0003187.1_g000010
rosa_roxburghii Rroxscaffold_3G00219330
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7AG496300 Rh7BG467600 Rh7CG513600 Rh7DG480800
rosa_wichuraiana Rw7G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 734, 1609, 1639
AatII GACGTC 1 cut(s) 1100
Acc36I ACCTGC 3 cut(s) 734, 1609, 1639
AccI GTMKAC 2 cut(s) 233, 1082
AccII CGCG 3 cut(s) 267, 1932, 1948
AccIII TCCGGA 1 cut(s) 1100
AciI CCGC 5 cut(s) 511, 684, 1932, 1946, 1961
AclWI GGATC 4 cut(s) 653, 802, 1077, 1083
AcoI YGGCCR 1 cut(s) 1741
AcsI RAATTY 4 cut(s) 420, 973, 1023, 1580
AcuI CTGAAG 2 cut(s) 915, 1517
AcyI GRCGYC 1 cut(s) 1097
AfaI GTAC 6 cut(s) 304, 331, 781, 892, 1164, 1179
AfiI CCNNNNNNNGG 1 cut(s) 690
AflIII ACRYGT 1 cut(s) 1517
AgsI TTSAA 7 cut(s) 610, 869, 912, 1018, 1445, 1569, 1580
AhlI ACTAGT 1 cut(s) 305
AjiI CACGTC 1 cut(s) 1520
AjnI CCWGG 2 cut(s) 1561, 2046
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 9 cut(s) 752, 838, 1113, 1441, 1472, 1572, 1661, 2011, 2076
AluI AGCT 9 cut(s) 752, 838, 1113, 1441, 1472, 1572, 1661, 2011, 2076
Alw26I GTCTC 8 cut(s) 205, 475, 927, 943, 1191, 1392, 1669, 1907
AlwI GGATC 4 cut(s) 653, 802, 1077, 1083
Aor13HI TCCGGA 1 cut(s) 1100
AoxI GGCC 3 cut(s) 1741, 1861, 1963
ApaI GGGCCC 2 cut(s) 1865, 1967
ApeKI GCWGC 4 cut(s) 262, 749, 1667, 1814
ApoI RAATTY 4 cut(s) 420, 973, 1023, 1580
AseI ATTAAT 1 cut(s) 1056
Asp700I GAANNNNTTC 2 cut(s) 1037, 1309
AspLEI GCGC 5 cut(s) 267, 269, 1531, 1788, 1831
AspS9I GGNCC 5 cut(s) 1340, 1861, 1862, 1963, 1964
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 6 cut(s) 16, 162, 405, 581, 1448, 1663
AvaII GGWCC 1 cut(s) 1340
BaeGI GKGCMC 3 cut(s) 313, 1865, 1967
BalI TGGCCA 1 cut(s) 1743
BanII GRGCYC 2 cut(s) 1865, 1967
BarI GAAGNNNNNNTAC 2 cut(s) 763, 795
BbsI GAAGAC 2 cut(s) 900, 1776
BbvCI CCTCAGC 1 cut(s) 1662
BbvI GCAGC 4 cut(s) 249, 761, 1654, 1801
BceAI ACGGC 1 cut(s) 965
BciT130I CCWGG 2 cut(s) 1563, 2048
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 8 cut(s) 205, 475, 927, 943, 1191, 1392, 1669, 1907
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 8 cut(s) 306, 336, 543, 663, 783, 1323, 1611, 1752
BfmI CTRYAG 4 cut(s) 879, 1314, 1632, 1875
BfoI RGCGCY 3 cut(s) 1532, 1789, 1832
BfuAI ACCTGC 3 cut(s) 734, 1609, 1639
BglII AGATCT 1 cut(s) 1133
BisI GCNGC 4 cut(s) 263, 750, 1668, 1815
BlsI GCNGC 4 cut(s) 264, 751, 1669, 1816
BmcAI AGTACT 3 cut(s) 304, 331, 781
Bme1390I CCNGG 3 cut(s) 633, 1563, 2048
Bme18I GGWCC 1 cut(s) 1340
BmgBI CACGTC 1 cut(s) 1520
BmgT120I GGNCC 5 cut(s) 1340, 1861, 1862, 1963, 1964
BmiI GGNNCC 2 cut(s) 1863, 1965
BmrFI CCNGG 3 cut(s) 633, 1563, 2048
BmsI GCATC 2 cut(s) 1537, 1844
BpiI GAAGAC 2 cut(s) 900, 1776
BpmI CTGGAG 4 cut(s) 319, 457, 1250, 1278
Bpu10I CCTNAGC 1 cut(s) 1662
BpuEI CTTGAG 3 cut(s) 263, 824, 1027
BpuMI CCSGG 1 cut(s) 633
BsaBI GATNNNNATC 2 cut(s) 984, 1074
BsaHI GRCGYC 1 cut(s) 1097
BsaI GGTCTC 2 cut(s) 475, 1907
BsaJI CCNNGG 3 cut(s) 947, 1028, 1561
BsaWI WCCGGW 1 cut(s) 1100
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse1I ACTGG 4 cut(s) 302, 474, 1142, 1803
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 984, 1074
BseAI TCCGGA 1 cut(s) 1100
BseBI CCWGG 2 cut(s) 1563, 2048
BseDI CCNNGG 3 cut(s) 947, 1028, 1561
BseGI GGATG 4 cut(s) 135, 460, 721, 1556
BseJI GATNNNNATC 2 cut(s) 984, 1074
BseLI CCNNNNNNNGG 1 cut(s) 690
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 6 cut(s) 452, 767, 1128, 1653, 1685, 1704
BseNI ACTGG 4 cut(s) 302, 474, 1142, 1803
BsePI GCGCGC 1 cut(s) 265
BseRI GAGGAG 3 cut(s) 1730, 1733, 1932
BseSI GKGCMC 3 cut(s) 313, 1865, 1967
BseXI GCAGC 4 cut(s) 249, 761, 1654, 1801
BsgI GTGCAG 3 cut(s) 762, 768, 1587
Bsh1236I CGCG 3 cut(s) 267, 1932, 1948
BshFI GGCC 3 cut(s) 1743, 1863, 1965
BsiSI CCGG 2 cut(s) 632, 1101
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 8 cut(s) 205, 475, 927, 943, 1191, 1392, 1669, 1907
BsmBI CGTCTC 4 cut(s) 205, 1191, 1392, 1669
BsmFI GGGAC 1 cut(s) 648
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 3 cut(s) 1743, 1863, 1965
Bso31I GGTCTC 2 cut(s) 475, 1907
Bsp120I GGGCCC 2 cut(s) 1861, 1963
Bsp1286I GDGCHC 3 cut(s) 313, 1865, 1967
Bsp13I TCCGGA 1 cut(s) 1100
Bsp143I GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
Bsp19I CCATGG 1 cut(s) 1028
BspACI CCGC 5 cut(s) 511, 684, 1932, 1946, 1961
BspANI GGCC 3 cut(s) 1743, 1863, 1965
BspCNI CTCAG 6 cut(s) 453, 768, 1129, 1654, 1684, 1705
BspEI TCCGGA 1 cut(s) 1100
BspFNI CGCG 3 cut(s) 267, 1932, 1948
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 1863, 1965
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 3 cut(s) 734, 1609, 1639
BspPI GGATC 4 cut(s) 653, 802, 1077, 1083
BspTNI GGTCTC 2 cut(s) 475, 1907
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 4 cut(s) 302, 474, 1142, 1803
BssECI CCNNGG 3 cut(s) 947, 1028, 1561
BssHII GCGCGC 1 cut(s) 265
BssMI GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
BssNI GRCGYC 1 cut(s) 1097
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 2 cut(s) 1563, 2048
Bst4CI ACNGT 3 cut(s) 248, 709, 1879
Bst6I CTCTTC 7 cut(s) 38, 103, 163, 315, 1001, 1278, 1558
BstACI GRCGYC 1 cut(s) 1097
BstC8I GCNNGC 5 cut(s) 267, 1157, 1833, 1963, 2061
BstDEI CTNAG 9 cut(s) 461, 507, 776, 1137, 1248, 1662, 1671, 1713, 2001
BstDSI CCRYGG 2 cut(s) 947, 1028
BstF5I GGATG 4 cut(s) 135, 460, 721, 1556
BstFNI CGCG 3 cut(s) 267, 1932, 1948
BstH2I RGCGCY 3 cut(s) 1532, 1789, 1832
BstHHI GCGC 5 cut(s) 267, 269, 1531, 1788, 1831
BstKTI GATC 7 cut(s) 430, 648, 797, 929, 1072, 1078, 1136
BstMAI GTCTC 8 cut(s) 205, 475, 927, 943, 1191, 1392, 1669, 1907
BstMBI GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 749, 878, 1667, 1820
BstNI CCWGG 2 cut(s) 1563, 2048
BstSCI CCNGG 3 cut(s) 631, 1561, 2046
BstSFI CTRYAG 4 cut(s) 879, 1314, 1632, 1875
BstSLI GKGCMC 3 cut(s) 313, 1865, 1967
BstUI CGCG 3 cut(s) 267, 1932, 1948
BstV1I GCAGC 4 cut(s) 249, 761, 1654, 1801
BstV2I GAAGAC 2 cut(s) 900, 1776
BstX2I RGATCY 2 cut(s) 1069, 1133
BstYI RGATCY 2 cut(s) 1069, 1133
BsuRI GGCC 3 cut(s) 1743, 1863, 1965
BtgI CCRYGG 2 cut(s) 947, 1028
BtrI CACGTC 1 cut(s) 1520
BtsCI GGATG 4 cut(s) 135, 460, 721, 1556
BtsIMutI CAGTG 2 cut(s) 481, 714
BveI ACCTGC 3 cut(s) 734, 1609, 1639
Cac8I GCNNGC 5 cut(s) 267, 1157, 1833, 1963, 2061
CciI TCATGA 1 cut(s) 424
CfoI GCGC 5 cut(s) 267, 269, 1531, 1788, 1831
Cfr13I GGNCC 5 cut(s) 1340, 1861, 1862, 1963, 1964
CseI GACGC 2 cut(s) 1409, 2065
Csp6I GTAC 6 cut(s) 303, 330, 780, 891, 1163, 1178
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 5 cut(s) 316, 425, 764, 1029, 1971
CviQI GTAC 6 cut(s) 303, 330, 780, 891, 1163, 1178
DdeI CTNAG 9 cut(s) 461, 507, 776, 1137, 1248, 1662, 1671, 1713, 2001
DpnI GATC 7 cut(s) 429, 647, 796, 928, 1071, 1077, 1135
DpnII GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
EaeI YGGCCR 1 cut(s) 1741
Eam1104I CTCTTC 7 cut(s) 38, 103, 163, 315, 1001, 1278, 1558
EarI CTCTTC 7 cut(s) 38, 103, 163, 315, 1001, 1278, 1558
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 2 cut(s) 1865, 1967
Eco31I GGTCTC 2 cut(s) 475, 1907
Eco32I GATATC 2 cut(s) 346, 726
Eco47I GGWCC 1 cut(s) 1340
Eco57I CTGAAG 2 cut(s) 915, 1517
EcoRI GAATTC 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 1561, 2046
EcoRV GATATC 2 cut(s) 346, 726
EcoT14I CCWWGG 1 cut(s) 1028
EcoT38I GRGCYC 2 cut(s) 1865, 1967
ErhI CCWWGG 1 cut(s) 1028
Esp3I CGTCTC 4 cut(s) 205, 1191, 1392, 1669
FaeI CATG 5 cut(s) 319, 428, 767, 1032, 1974
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 648
FatI CATG 5 cut(s) 315, 424, 763, 1028, 1970
FauI CCCGC 2 cut(s) 691, 1954
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 2 cut(s) 233, 1082
Fnu4HI GCNGC 4 cut(s) 263, 750, 1668, 1815
FokI GGATG 4 cut(s) 122, 467, 728, 1543
FriOI GRGCYC 2 cut(s) 1865, 1967
Fsp4HI GCNGC 4 cut(s) 263, 750, 1668, 1815
FspBI CTAG 8 cut(s) 306, 336, 543, 663, 783, 1323, 1611, 1752
GlaI GCGC 5 cut(s) 266, 268, 1530, 1787, 1830
GluI GCNGC 4 cut(s) 263, 750, 1668, 1815
GsuI CTGGAG 4 cut(s) 319, 457, 1250, 1278
HaeII RGCGCY 3 cut(s) 1532, 1789, 1832
HaeIII GGCC 3 cut(s) 1743, 1863, 1965
HapII CCGG 2 cut(s) 632, 1101
HgaI GACGC 2 cut(s) 1409, 2065
HhaI GCGC 5 cut(s) 267, 269, 1531, 1788, 1831
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 5 cut(s) 319, 428, 767, 1032, 1974
Hin6I GCGC 5 cut(s) 265, 267, 1529, 1786, 1829
HinP1I GCGC 5 cut(s) 265, 267, 1529, 1786, 1829
HincII GTYRAC 1 cut(s) 1523
HindII GTYRAC 1 cut(s) 1523
HindIII AAGCTT 2 cut(s) 1570, 2009
HpaII CCGG 2 cut(s) 632, 1101
HphI GGTGA 6 cut(s) 16, 162, 405, 581, 1448, 1663
Hpy166II GTNNAC 6 cut(s) 7, 234, 1083, 1163, 1178, 1523
Hpy8I GTNNAC 6 cut(s) 7, 234, 1083, 1163, 1178, 1523
HpyCH4III ACNGT 3 cut(s) 248, 709, 1879
HpyCH4IV ACGT 3 cut(s) 448, 1097, 1519
HpyCH4V TGCA 6 cut(s) 743, 749, 881, 1604, 1835, 2022
HpyF10VI GCNNNNNNNGC 4 cut(s) 749, 878, 1667, 1820
HpyF3I CTNAG 9 cut(s) 461, 507, 776, 1137, 1248, 1662, 1671, 1713, 2001
HpySE526I ACGT 3 cut(s) 448, 1097, 1519
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 5 cut(s) 319, 428, 767, 1032, 1974
HspAI GCGC 5 cut(s) 265, 267, 1529, 1786, 1829
Kpn2I TCCGGA 1 cut(s) 1100
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 4 cut(s) 249, 761, 1654, 1801
LweI GCATC 2 cut(s) 1537, 1844
MaeI CTAG 8 cut(s) 306, 336, 543, 663, 783, 1323, 1611, 1752
MaeII ACGT 3 cut(s) 448, 1097, 1519
MaeIII GTNAC 2 cut(s) 853, 1879
MalI GATC 7 cut(s) 429, 647, 796, 928, 1071, 1077, 1135
MboI GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
MflI RGATCY 2 cut(s) 1069, 1133
MhlI GDGCHC 3 cut(s) 313, 1865, 1967
MlsI TGGCCA 1 cut(s) 1743
MluNI TGGCCA 1 cut(s) 1743
MlyI GAGTC 4 cut(s) 142, 532, 740, 1295
Mox20I TGGCCA 1 cut(s) 1743
MroI TCCGGA 1 cut(s) 1100
MroXI GAANNNNTTC 2 cut(s) 1037, 1309
MscI TGGCCA 1 cut(s) 1743
MseI TTAA 4 cut(s) 528, 825, 1056, 1574
Msp20I TGGCCA 1 cut(s) 1743
MspI CCGG 2 cut(s) 632, 1101
MspR9I CCNGG 3 cut(s) 633, 1563, 2048
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 1563, 2048
MvnI CGCG 3 cut(s) 267, 1932, 1948
MwoI GCNNNNNNNGC 4 cut(s) 749, 878, 1667, 1820
NciI CCSGG 1 cut(s) 633
NcoI CCATGG 1 cut(s) 1028
NdeII GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
NlaIII CATG 5 cut(s) 319, 428, 767, 1032, 1974
NlaIV GGNNCC 2 cut(s) 1863, 1965
NmuCI GTSAC 1 cut(s) 853
PagI TCATGA 1 cut(s) 424
PaqCI CACCTGC 3 cut(s) 734, 1609, 1639
PauI GCGCGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 490
PdmI GAANNNNTTC 2 cut(s) 1037, 1309
PfeI GAWTC 8 cut(s) 401, 985, 1219, 1421, 1709, 1748, 1978, 1997
PfoI TCCNGGA 1 cut(s) 2046
PkrI GCNGC 4 cut(s) 264, 751, 1669, 1816
PleI GAGTC 4 cut(s) 142, 531, 739, 1294
PpsI GAGTC 4 cut(s) 142, 531, 739, 1294
PshBI ATTAAT 1 cut(s) 1056
Psp6I CCWGG 2 cut(s) 1561, 2046
PspGI CCWGG 2 cut(s) 1561, 2046
PspN4I GGNNCC 2 cut(s) 1863, 1965
PspOMI GGGCCC 2 cut(s) 1861, 1963
PspPI GGNCC 5 cut(s) 1340, 1861, 1862, 1963, 1964
PstI CTGCAG 1 cut(s) 883
PsuI RGATCY 2 cut(s) 1069, 1133
PteI GCGCGC 1 cut(s) 265
RsaI GTAC 6 cut(s) 304, 331, 781, 892, 1164, 1179
RsaNI GTAC 6 cut(s) 303, 330, 780, 891, 1163, 1178
SaqAI TTAA 4 cut(s) 528, 825, 1056, 1574
SatI GCNGC 4 cut(s) 263, 750, 1668, 1815
Sau3AI GATC 7 cut(s) 427, 645, 794, 926, 1069, 1075, 1133
Sau96I GGNCC 5 cut(s) 1340, 1861, 1862, 1963, 1964
ScaI AGTACT 3 cut(s) 304, 331, 781
SchI GAGTC 4 cut(s) 142, 532, 740, 1295
ScrFI CCNGG 3 cut(s) 633, 1563, 2048
SduI GDGCHC 3 cut(s) 313, 1865, 1967
SfaNI GCATC 2 cut(s) 1537, 1844
SfcI CTRYAG 4 cut(s) 879, 1314, 1632, 1875
SinI GGWCC 1 cut(s) 1340
SmlI CTYRAG 3 cut(s) 278, 839, 1042
SmoI CTYRAG 3 cut(s) 278, 839, 1042
SpeI ACTAGT 1 cut(s) 305
SsiI CCGC 5 cut(s) 511, 684, 1932, 1946, 1961
SspMI CTAG 8 cut(s) 306, 336, 543, 663, 783, 1323, 1611, 1752
StyD4I CCNGG 3 cut(s) 631, 1561, 2046
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 3 cut(s) 248, 709, 1879
TaiI ACGT 3 cut(s) 451, 1100, 1522
TaqI TCGA 4 cut(s) 394, 925, 1289, 1538
TatI WGTACW 4 cut(s) 302, 329, 779, 1177
TfiI GAWTC 8 cut(s) 401, 985, 1219, 1421, 1709, 1748, 1978, 1997
Tru1I TTAA 4 cut(s) 528, 825, 1056, 1574
Tru9I TTAA 4 cut(s) 528, 825, 1056, 1574
TscAI CASTG 2 cut(s) 481, 714
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 4 cut(s) 262, 749, 1667, 1814
Tsp45I GTSAC 1 cut(s) 853
TspRI CASTG 2 cut(s) 481, 714
VpaK11BI GGWCC 1 cut(s) 1340
VspI ATTAAT 1 cut(s) 1056
XapI RAATTY 4 cut(s) 420, 973, 1023, 1580
XmiI GTMKAC 2 cut(s) 233, 1082
XmnI GAANNNNTTC 2 cut(s) 1037, 1309
XspI CTAG 8 cut(s) 306, 336, 543, 663, 783, 1323, 1611, 1752
ZraI GACGTC 1 cut(s) 1098
ZrmI AGTACT 3 cut(s) 304, 331, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.