Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Forward (+)

107128 .. 114009

Gene Structure 6882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGAATCAGAGGACGATTTCGATATGCACGATGCCAACGATGACGACAACGACGAGGATTTCTACAGTGGCGGCGATGACGACGCCGCCGCCTCTATGGACAGCGACGATGCCGGCGTTGCCGATTACGAGTTCATCGACAATGACTCTGATGATTCCAATGACGCCGCCTCCCATCGCTACCAGCAAAGCTACACTGTTTTGACGGAAGCCGACATTCGTCAACGTCAAGAGGAGGATGTCACAAAGATATCTACAGTGCTTTCCATTCCAAAATTTGCAGCTAGCATACTGCTCCGCTACTATAATTGGAGTGTAAGCAAAGTACATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGCAAGATTGTTGGCTTACCGGAGAAACCAGTTATCGAACACCGTAATGCTAAAGATCTTGATTGTGGGATTTGTTTTGACACCTTTCATCGTAACGAGATGCATGCTGCATCTTGTGGTCATCCTTTTTGTTTCTCGTGCTGGGCAGGTTATATTGGCACGGCAATTAATGATGGTCCTGGATGTTTAATGTTGCGCTGCCCTGATCCATCTTGTGGTGCTGTTGTTTTCCAAGATATGATTAATGCACTGGCTTCGAATGAAGACAGGGAGAAATATTCTCGTTACTTTATTAGATCTTATGTCGAGGACAATAGGAAGACCAAATGGTGTCCTGCTCCAGGCTGTGATTATGCTATAGATTTTATTGTTGGCAGTGGAAGCTATGATGTTACATGCCGCTGTTCATATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGGACAGTGGCCAAATGGATATTGAAGAACAGTGCCGAATCTGAAAATATGAATTGGATATTGGCTAATTCCAAGCCCTGCCCGAAGTGCAAGCGACCCATTGAGAAAAACCAAGGCTGTATGCATATCACTTGCACACCACCTTGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTGCATGGTCCGACCATGGTGAACGGACAGGTGGATTTTATGCCTGTAACCGCTATGAGACAGCGAAGCAGGAAGGAGTGTATGATGAGGCAGAGAGACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTATACCCATTATTACGAAAGATGGGCAACCAATCAATCGTCGAGGCAAAAAGCATTAGCAGACTTGCAGCAGATGCAAACTGTGCATCTTGAGAAGCTGAGCGACATCCAGTGCCAACCTGAGTCACAGCTGAAGTTTATTACAGAGGCCTGGTTACAGATAGTCGAGTGCAGGCGAGTACTGAAGTGGACATATGCCTATGGTTATTATTTACCTGACCACGAACATGCCAAGAGACAGTTCTTTGAATACTTACAAGGTGAGGCTGAGTCTGGGTTGGAACGACTTCATCAATGTGCAGAAAAGGAGCTGCAAGCTTATCTCAATGAAGAGGACCCAGCAAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGATTGACCAGTGTGACACGAAACTACTTCGAAAATTTAGTTCGAGCTCTGGAGAATGGTCTGTCAGATGTTGACTGTATTGGTGCAACCAGTAAGACGGCGACGGCAAACTCAAAGAGTTTGGGAGCTGCAAGCAGCAAGGGAAGAGGTGGGAGGGGCAAGGCAACAACATCCAGGTCAAGTAGCTCCCATAGAAATATTGATGATTTAGGCCACTGGTCCTGTGAACATTGCACCTTTGCAAATGTGAGGTCAGCCACTGTCTGCCAGATGTGCCAACAACGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

597

Amino Acids

67.87

Weight (kDa)

5.15

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	75 - 114	1.6e-08	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR	PF01485	211 - 273	2.1e-16	IBR domain, a half RING-finger domain
IBR	PF01485	290 - 337	3.9e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	295 - 335	2.7e-14	IBR domain
IBR_2	PF22605	296 - 335	4.4e-12	IBR domain
Ariadne	PF19422	374 - 558	1.7e-06	Ariadne domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	1127
AciI	CCGC	7 cut(s)	72, 87, 90, 168, 298, 760, 1045
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	2 cut(s)	828, 1104
AcsI	RAATTY	3 cut(s)	275, 968, 1534
AcuI	CTGAAG	2 cut(s)	1277, 1328
AcyI	GRCGYC	2 cut(s)	84, 165
AfaI	GTAC	3 cut(s)	327, 790, 1305
AfiI	CCNNNNNNNGG	2 cut(s)	575, 701
AgsI	TTSAA	3 cut(s)	844, 1373, 1477
AjnI	CCWGG	4 cut(s)	538, 700, 1274, 1673
AjuI	GAANNNNNNNTTGG	4 cut(s)	863, 895, 1349, 1381
Alw21I	GWGCWC	1 cut(s)	1549
Alw26I	GTCTC	3 cut(s)	1046, 1084, 1354
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	1760
AoxI	GGCC	4 cut(s)	828, 1104, 1272, 1711
ApeKI	GCWGC	7 cut(s)	281, 467, 558, 1192, 1435, 1628, 1635
ApoI	RAATTY	3 cut(s)	275, 968, 1534
ArsI	GACNNNNNNTTYG	2 cut(s)	1736, 1768
AseI	ATTAAT	2 cut(s)	528, 603
Asp700I	GAANNNNTTC	2 cut(s)	357, 1410
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	4 cut(s)	536, 1002, 1459, 1719
AsuHPI	GGTGA	2 cut(s)	1025, 1397
AsuII	TTCGAA	2 cut(s)	617, 1530
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	4 cut(s)	536, 1002, 1459, 1719
BalI	TGGCCA	2 cut(s)	830, 1106
BanII	GRGCYC	1 cut(s)	1549
BauI	CACGAG	1 cut(s)	496
BbsI	GAAGAC	2 cut(s)	630, 686
Bbv12I	GWGCWC	1 cut(s)	1549
BbvI	GCAGC	7 cut(s)	293, 454, 545, 1204, 1422, 1615, 1647
BccI	CCATC	5 cut(s)	183, 527, 577, 1096, 1140
BceAI	ACGGC	3 cut(s)	537, 1614, 1620
BcgI	CGANNNNNNTGC	4 cut(s)	446, 480, 597, 631
BciT130I	CCWGG	4 cut(s)	540, 702, 1276, 1675
BcoDI	GTCTC	3 cut(s)	1046, 1084, 1354
BfaI	CTAG	2 cut(s)	285, 1118
BfmI	CTRYAG	3 cut(s)	64, 255, 717
BfuAI	ACCTGC	1 cut(s)	497
BglII	AGATCT	2 cut(s)	415, 656
BlpI	GCTNAGC	1 cut(s)	1223
BmcAI	AGTACT	1 cut(s)	1305
Bme1390I	CCNGG	4 cut(s)	540, 702, 1276, 1675
Bme18I	GGWCC	4 cut(s)	536, 1002, 1459, 1719
BmgT120I	GGNCC	4 cut(s)	536, 1002, 1459, 1719
BmiI	GGNNCC	1 cut(s)	1461
BmrFI	CCNGG	4 cut(s)	540, 702, 1276, 1675
BmsI	GCATC	6 cut(s)	22, 100, 450, 479, 1188, 1219
BmtI	GCTAGC	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	630, 686
BpmI	CTGGAG	2 cut(s)	684, 1571
Bpu1102I	GCTNAGC	1 cut(s)	1223
Bpu14I	TTCGAA	2 cut(s)	617, 1530
BpuEI	CTTGAG	1 cut(s)	1235
BsaHI	GRCGYC	2 cut(s)	84, 165
BsaJI	CCNNGG	2 cut(s)	931, 1009
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 701
Bse118I	RCCGGY	2 cut(s)	113, 1785
Bse1I	ACTGG	6 cut(s)	389, 615, 1234, 1509, 1590, 1721
Bse3DI	GCAATG	1 cut(s)	1729
BseBI	CCWGG	4 cut(s)	540, 702, 1276, 1675
BseDI	CCNNGG	2 cut(s)	931, 1009
BseGI	GGATG	5 cut(s)	244, 481, 548, 1230, 1670
BseLI	CCNNNNNNNGG	2 cut(s)	575, 701
BseMI	GCAATG	1 cut(s)	1729
BseMII	CTCAG	4 cut(s)	783, 1214, 1236, 1383
BseNI	ACTGG	6 cut(s)	389, 615, 1234, 1509, 1590, 1721
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	7 cut(s)	293, 454, 545, 1204, 1422, 1615, 1647
BseYI	CCCAGC	2 cut(s)	501, 1462
BsgI	GTGCAG	2 cut(s)	1315, 1443
BshFI	GGCC	4 cut(s)	830, 1106, 1274, 1713
BsiHKAI	GWGCWC	1 cut(s)	1549
BsiSI	CCGG	3 cut(s)	114, 380, 1786
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	2 cut(s)	575, 701
BsmAI	GTCTC	3 cut(s)	1046, 1084, 1354
BsmBI	CGTCTC	1 cut(s)	1084
BsmFI	GGGAC	1 cut(s)	835
BsnI	GGCC	4 cut(s)	830, 1106, 1274, 1713
Bsp119I	TTCGAA	2 cut(s)	617, 1530
Bsp1286I	GDGCHC	1 cut(s)	1549
Bsp143I	GATC	3 cut(s)	415, 565, 656
Bsp1720I	GCTNAGC	1 cut(s)	1223
Bsp19I	CCATGG	1 cut(s)	1009
BspACI	CCGC	7 cut(s)	72, 87, 90, 168, 298, 760, 1045
BspANI	GGCC	4 cut(s)	830, 1106, 1274, 1713
BspCNI	CTCAG	4 cut(s)	784, 1215, 1237, 1384
BspLI	GGNNCC	1 cut(s)	1461
BspMI	ACCTGC	1 cut(s)	497
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	560
BspT104I	TTCGAA	2 cut(s)	617, 1530
BsrDI	GCAATG	1 cut(s)	1729
BsrFI	RCCGGY	2 cut(s)	113, 1785
BsrI	ACTGG	6 cut(s)	389, 615, 1234, 1509, 1590, 1721
BssAI	RCCGGY	2 cut(s)	113, 1785
BssECI	CCNNGG	2 cut(s)	931, 1009
BssMI	GATC	3 cut(s)	415, 565, 656
BssNAI	GTATAC	1 cut(s)	1128
BssNI	GRCGYC	2 cut(s)	84, 165
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	931, 1009
Bst1107I	GTATAC	1 cut(s)	1128
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	4 cut(s)	540, 702, 1276, 1675
Bst6I	CTCTTC	3 cut(s)	1090, 1449, 1639
BstACI	GRCGYC	2 cut(s)	84, 165
BstAPI	GCANNNNNTGC	2 cut(s)	1198, 1207
BstBI	TTCGAA	2 cut(s)	617, 1530
BstC8I	GCNNGC	8 cut(s)	115, 286, 465, 911, 983, 1298, 1440, 1633
BstDEI	CTNAG	4 cut(s)	792, 1223, 1245, 1392
BstDSI	CCRYGG	1 cut(s)	1009
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	5 cut(s)	244, 481, 548, 1230, 1670
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	3 cut(s)	418, 568, 659
BstMAI	GTCTC	3 cut(s)	1046, 1084, 1354
BstMBI	GATC	3 cut(s)	415, 565, 656
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 741, 906, 1198, 1207, 1773, 1782
BstNI	CCWGG	4 cut(s)	540, 702, 1276, 1675
BstNSI	RCATGY	3 cut(s)	467, 759, 1355
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	4 cut(s)	538, 700, 1274, 1673
BstSFI	CTRYAG	3 cut(s)	64, 255, 717
BstV1I	GCAGC	7 cut(s)	293, 454, 545, 1204, 1422, 1615, 1647
BstV2I	GAAGAC	2 cut(s)	630, 686
BstX2I	RGATCY	2 cut(s)	415, 656
BstYI	RGATCY	2 cut(s)	415, 656
BstZ17I	GTATAC	1 cut(s)	1128
BsuRI	GGCC	4 cut(s)	830, 1106, 1274, 1713
BtgI	CCRYGG	1 cut(s)	1009
BtgZI	GCGATG	2 cut(s)	90, 161
BtsCI	GGATG	5 cut(s)	244, 481, 548, 1230, 1670
BtsI	GCAGTG	1 cut(s)	742
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	8 cut(s)	115, 286, 465, 911, 983, 1298, 1440, 1633
CaiI	CAGNNNCTG	1 cut(s)	1760
CfoI	GCGC	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	113, 1785
Cfr13I	GGNCC	4 cut(s)	536, 1002, 1459, 1719
CseI	GACGC	2 cut(s)	92, 173
Csp6I	GTAC	3 cut(s)	326, 789, 1304
CviAII	CATG	6 cut(s)	329, 464, 756, 999, 1010, 1352
CviQI	GTAC	3 cut(s)	326, 789, 1304
DdeI	CTNAG	4 cut(s)	792, 1223, 1245, 1392
DpnI	GATC	3 cut(s)	417, 567, 658
DpnII	GATC	3 cut(s)	415, 565, 656
EaeI	YGGCCR	2 cut(s)	828, 1104
Eam1104I	CTCTTC	3 cut(s)	1090, 1449, 1639
EarI	CTCTTC	3 cut(s)	1090, 1449, 1639
Ecl136II	GAGCTC	1 cut(s)	1547
Eco130I	CCWWGG	2 cut(s)	931, 1009
Eco147I	AGGCCT	1 cut(s)	1274
Eco24I	GRGCYC	1 cut(s)	1549
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	4 cut(s)	536, 1002, 1459, 1719
Eco53kI	GAGCTC	1 cut(s)	1547
Eco57I	CTGAAG	2 cut(s)	1277, 1328
EcoICRI	GAGCTC	1 cut(s)	1547
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	1459
EcoRII	CCWGG	4 cut(s)	538, 700, 1274, 1673
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	931, 1009
EcoT22I	ATGCAT	2 cut(s)	465, 945
EcoT38I	GRGCYC	1 cut(s)	1549
ErhI	CCWWGG	2 cut(s)	931, 1009
Esp3I	CGTCTC	1 cut(s)	1084
FaeI	CATG	6 cut(s)	332, 467, 759, 1002, 1013, 1355
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	6 cut(s)	328, 463, 755, 998, 1009, 1351
FauNDI	CATATG	1 cut(s)	1318
FblI	GTMKAC	1 cut(s)	1127
FokI	GGATG	5 cut(s)	251, 468, 555, 1217, 1657
FriOI	GRGCYC	1 cut(s)	1549
FspBI	CTAG	2 cut(s)	285, 1118
GlaI	GCGC	1 cut(s)	557
GsaI	CCCAGC	2 cut(s)	505, 1466
GsuI	CTGGAG	2 cut(s)	684, 1571
HaeIII	GGCC	4 cut(s)	830, 1106, 1274, 1713
HapII	CCGG	3 cut(s)	114, 380, 1786
HgaI	GACGC	2 cut(s)	92, 173
HhaI	GCGC	1 cut(s)	558
Hin1I	GRCGYC	2 cut(s)	84, 165
Hin1II	CATG	6 cut(s)	332, 467, 759, 1002, 1013, 1355
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	2 cut(s)	224, 1573
HindII	GTYRAC	2 cut(s)	224, 1573
HindIII	AAGCTT	1 cut(s)	1440
HinfI	GANTC	6 cut(s)	5, 146, 155, 857, 1247, 1394
HpaII	CCGG	3 cut(s)	114, 380, 1786
HphI	GGTGA	2 cut(s)	1025, 1397
Hpy166II	GTNNAC	6 cut(s)	224, 1016, 1128, 1314, 1573, 1727
Hpy188I	TCNGA	5 cut(s)	10, 151, 862, 1006, 1567
Hpy188III	TCNNGA	5 cut(s)	230, 419, 1118, 1214, 1550
Hpy8I	GTNNAC	6 cut(s)	224, 1016, 1128, 1314, 1573, 1727
Hpy99I	CGWCG	5 cut(s)	56, 86, 110, 1168, 1606
HpyAV	CCTTC	1 cut(s)	1061
HpyCH4IV	ACGT	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 741, 906, 1198, 1207, 1773, 1782
HpyF3I	CTNAG	4 cut(s)	792, 1223, 1245, 1392
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	2 cut(s)	84, 165
Hsp92II	CATG	6 cut(s)	332, 467, 759, 1002, 1013, 1355
HspAI	GCGC	1 cut(s)	556
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	415, 565, 656
LmnI	GCTCC	5 cut(s)	300, 703, 1432, 1625, 1691
Lsp1109I	GCAGC	7 cut(s)	293, 454, 545, 1204, 1422, 1615, 1647
LweI	GCATC	6 cut(s)	22, 100, 450, 479, 1188, 1219
MaeI	CTAG	2 cut(s)	285, 1118
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	8 cut(s)	241, 452, 644, 751, 1040, 1248, 1278, 1513
MalI	GATC	3 cut(s)	417, 567, 658
MboI	GATC	3 cut(s)	415, 565, 656
MboII	GAAGA	7 cut(s)	362, 635, 691, 856, 1107, 1466, 1656
MflI	RGATCY	2 cut(s)	415, 656
MhlI	GDGCHC	1 cut(s)	1549
MlsI	TGGCCA	2 cut(s)	830, 1106
MluCI	AATT	8 cut(s)	275, 307, 525, 784, 871, 886, 968, 1534
MluNI	TGGCCA	2 cut(s)	830, 1106
MlyI	GAGTC	3 cut(s)	140, 1256, 1403
MmeI	TCCRAC	2 cut(s)	1029, 1383
Mox20I	TGGCCA	2 cut(s)	830, 1106
Mph1103I	ATGCAT	2 cut(s)	465, 945
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	357, 1410
MscI	TGGCCA	2 cut(s)	830, 1106
MseI	TTAA	3 cut(s)	528, 548, 603
MslI	CAYNNNNRTG	3 cut(s)	405, 1350, 1419
Msp20I	TGGCCA	2 cut(s)	830, 1106
MspA1I	CMGCKG	2 cut(s)	762, 1255
MspI	CCGG	3 cut(s)	114, 380, 1786
MspR9I	CCNGG	4 cut(s)	540, 702, 1276, 1675
MvaI	CCWGG	4 cut(s)	540, 702, 1276, 1675
MwoI	GCNNNNNNNGC	7 cut(s)	119, 741, 906, 1198, 1207, 1773, 1782
NaeI	GCCGGC	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	1009
NdeI	CATATG	1 cut(s)	1318
NdeII	GATC	3 cut(s)	415, 565, 656
NgoMIV	GCCGGC	1 cut(s)	113
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	6 cut(s)	332, 467, 759, 1002, 1013, 1355
NlaIV	GGNNCC	1 cut(s)	1461
NmuCI	GTSAC	3 cut(s)	241, 1248, 1513
NsiI	ATGCAT	2 cut(s)	465, 945
NspI	RCATGY	3 cut(s)	467, 759, 1355
NspV	TTCGAA	2 cut(s)	617, 1530
PaeI	GCATGC	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	1274
PcsI	WCGNNNNNNNCGW	5 cut(s)	27, 36, 51, 114, 135
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	357, 1410
PfeI	GAWTC	3 cut(s)	5, 155, 857
PflMI	CCANNNNNTGG	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	538
PleI	GAGTC	3 cut(s)	140, 1255, 1402
PpsI	GAGTC	3 cut(s)	140, 1255, 1402
PpuMI	RGGWCCY	1 cut(s)	1459
PshAI	GACNNNNGTC	1 cut(s)	219
PshBI	ATTAAT	2 cut(s)	528, 603
Psp124BI	GAGCTC	1 cut(s)	1549
Psp5II	RGGWCCY	1 cut(s)	1459
Psp6I	CCWGG	4 cut(s)	538, 700, 1274, 1673
PspFI	CCCAGC	2 cut(s)	501, 1462
PspGI	CCWGG	4 cut(s)	538, 700, 1274, 1673
PspN4I	GGNNCC	1 cut(s)	1461
PspPI	GGNCC	4 cut(s)	536, 1002, 1459, 1719
PspPPI	RGGWCCY	1 cut(s)	1459
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	2 cut(s)	415, 656
PvuII	CAGCTG	1 cut(s)	1255
RsaI	GTAC	3 cut(s)	327, 790, 1305
RsaNI	GTAC	3 cut(s)	326, 789, 1304
RseI	CAYNNNNRTG	3 cut(s)	405, 1350, 1419
SacI	GAGCTC	1 cut(s)	1549
SaqAI	TTAA	3 cut(s)	528, 548, 603
Sau3AI	GATC	3 cut(s)	415, 565, 656
Sau96I	GGNCC	4 cut(s)	536, 1002, 1459, 1719
ScaI	AGTACT	1 cut(s)	1305
SchI	GAGTC	3 cut(s)	140, 1256, 1403
ScrFI	CCNGG	4 cut(s)	540, 702, 1276, 1675
SduI	GDGCHC	1 cut(s)	1549
SfaNI	GCATC	6 cut(s)	22, 100, 450, 479, 1188, 1219
SfcI	CTRYAG	3 cut(s)	64, 255, 717
SfuI	TTCGAA	2 cut(s)	617, 1530
SinI	GGWCC	4 cut(s)	536, 1002, 1459, 1719
SmiMI	CAYNNNNRTG	3 cut(s)	405, 1350, 1419
SmlI	CTYRAG	1 cut(s)	1214
SmoI	CTYRAG	1 cut(s)	1214
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	8 cut(s)	275, 307, 525, 784, 871, 886, 968, 1534
SseBI	AGGCCT	1 cut(s)	1274
SsiI	CCGC	7 cut(s)	72, 87, 90, 168, 298, 760, 1045
SspI	AATATT	2 cut(s)	638, 1699
SspMI	CTAG	2 cut(s)	285, 1118
SstI	GAGCTC	1 cut(s)	1549
StuI	AGGCCT	1 cut(s)	1274
StyD4I	CCNGG	4 cut(s)	538, 700, 1274, 1673
StyI	CCWWGG	2 cut(s)	931, 1009
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	9 cut(s)	21, 138, 396, 617, 666, 1166, 1290, 1530, 1543
TasI	AATT	8 cut(s)	275, 307, 525, 784, 871, 886, 968, 1534
TatI	WGTACW	3 cut(s)	325, 788, 1303
TauI	GCSGC	5 cut(s)	75, 89, 92, 170, 762
TfiI	GAWTC	3 cut(s)	5, 155, 857
Tru1I	TTAA	3 cut(s)	528, 548, 603
Tru9I	TTAA	3 cut(s)	528, 548, 603
TseFI	GTSAC	3 cut(s)	241, 1248, 1513
TseI	GCWGC	7 cut(s)	281, 467, 558, 1192, 1435, 1628, 1635
Tsp45I	GTSAC	3 cut(s)	241, 1248, 1513
TspDTI	ATGAA	8 cut(s)	124, 363, 437, 636, 756, 884, 1403, 1467
TspGWI	ACGGA	2 cut(s)	221, 1033
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	4 cut(s)	536, 1002, 1459, 1719
VspI	ATTAAT	2 cut(s)	528, 603
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	3 cut(s)	275, 968, 1534
XbaI	TCTAGA	1 cut(s)	1117
XceI	RCATGY	3 cut(s)	467, 759, 1355
XmiI	GTMKAC	1 cut(s)	1127
XmnI	GAANNNNTTC	2 cut(s)	357, 1410
XspI	CTAG	2 cut(s)	285, 1118
ZrmI	AGTACT	1 cut(s)	1305
Zsp2I	ATGCAT	2 cut(s)	465, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.