Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Forward (+)

46723823 .. 46730567

Gene Structure 6745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGGAATCAGAGGACGAGTTCGATATGCACGATGCGAACGATGACGACAACGACGAGGATTTCTATAGTGGCGGCGACGACGACGCCGCCGCCTCTATGGACAGCGACGATGCCGGCGTTGCCGATTACGAGTTCATCGATAACGACTCCGACGATTCCAATGACGCCGCCTCGCATCGATACCAGCAAAACTACACTGTTTTGACGGAAGCTGACATTCGTCAACATCAAGAGGAGGATATTACAAAGATATCTACAGTGCTTTCCATCTCAAAGGCTGCAGCTAGCATACTGCTCCGCTACTATAATTGGAGTGTAAGCAAAGTACATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGCAAGACTGTTGGCTTACCGGAGAAACCAGTTATTGAATACCGTAATGCTAAAGAGCTTAATTGTGGGATTTGTTTTGACACCTATCCTTGTGAAGAGATGCATGCTGCAGCTTGTGGTCATCCTTTTTGTGACTCATGCTGGGCAGGTTATATTGCTACGGCAATTAATGATGGTCCTGGATGTTTAATGTTGCGCTGTCCTGATCCATCTTGTGGTGCTGTTGTTTTCCAAGATATGATTAATGAACTGGCTTCCAATGAAGACAGGGAGAAATATTCTCGTTACTTTATTAGATCTTATGTCGAGGACAACCGGAAGACCAAATGGTGTCCTGCTCCCGGCTGTGATTATGCTATAGATTTTATTGTTGGTAGTGGAAGCTATGATGTTACTTGCTGCTGTTCATATAGCTTTTGCTGGAACTGTACTGAAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAAATGGATATTGAAGAACAGTGCCGAATCTGAAAATATGAATTGGATACTGGCTAATTCCAAGCCCTGCCCCAAGTGCAAACGACCCATTGAGAAAAACCAAGGCTGTATGCATATCACTTGCACACCACCTTGTAAATTTGAGTTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAACATGGTGAAAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCGAAGCAGGAGGGAGTGTATGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTACGAAAGATGGGCAACCAATCAGTCGTCCAGACAAAAAGCACTAGCAGACTTGCAGCAGATGCAGACTGTGCATCTTGAGAAGCTGAGCGACATCCAGTGCCAACCTGAGTCACAGCTGAAGTTCATTACAGAGGCCTGGTTACAGATAGTTGAGTGTAGGCGAGTACTGAAATGGACATATGCCTATGGATATTATTTACCTGAGCACGAACATGCCAAGAGACAGTTCTTTGAATACTTGCAAGGTGAGGCCGAGTCTGGGTTGGAACGACTTCATCAATGTGCAGAAAAGGAGCTGCAAGTTTATCTCAATGAAGAGGACCCACCAAAAGATTTTAATGAGTTTCGCACAAAACTTGCTGGATTGACCAGCGTGACACGAAACTACTTTGAAAATTTAGTTCGAGCTCTGGAGAATGGTCTGTCAGATGTGGACTCCATTGGTGCAAGCAGCAAGACGGCAAACTCAAAGAGTTTGGGAGGTGCAAGCAGCAAGGGAAGAGGTGGGAGGGGCAAGGCTACAACATCCAGGTCAAGTAGCTCCAATAGAAATATTGACGATTTAGTCGTCTGGTCCTGTGAGCATTGCACCTTTGCAAATGTGAGGTCAGCCACTGTCTGCCAGATGTGCCAACAACGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

594

Amino Acids

67.58

Weight (kDa)

4.93

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	75 - 114	1e-09	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR	PF01485	211 - 273	8e-15	IBR domain, a half RING-finger domain
IBR	PF01485	290 - 336	3.6e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	295 - 335	2.1e-14	IBR domain
IBR_2	PF22605	296 - 335	4.4e-12	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1703
Acc36I	ACCTGC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	575
AciI	CCGC	6 cut(s)	72, 87, 90, 168, 298, 1045
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	2 cut(s)	828, 1104
AcsI	RAATTY	2 cut(s)	968, 1534
AcuI	CTGAAG	2 cut(s)	813, 1277
AcyI	GRCGYC	2 cut(s)	84, 165
AfaI	GTAC	4 cut(s)	327, 790, 1127, 1305
AfiI	CCNNNNNNNGG	3 cut(s)	575, 701, 1398
AgsI	TTSAA	4 cut(s)	398, 844, 1373, 1532
AjnI	CCWGG	3 cut(s)	538, 1274, 1667
AjuI	GAANNNNNNNTTGG	2 cut(s)	1349, 1381
Alw21I	GWGCWC	2 cut(s)	1347, 1549
Alw26I	GTCTC	2 cut(s)	1046, 1354
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	1754
AoxI	GGCC	4 cut(s)	828, 1104, 1272, 1389
ApeKI	GCWGC	9 cut(s)	278, 281, 467, 470, 759, 1192, 1435, 1590, 1629
ApoI	RAATTY	2 cut(s)	968, 1534
ArsI	GACNNNNNNTTYG	2 cut(s)	1730, 1762
AseI	ATTAAT	2 cut(s)	528, 603
Asp700I	GAANNNNTTC	2 cut(s)	357, 1410
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	3 cut(s)	536, 1459, 1713
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	1025, 1397
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	536, 1459, 1713
BalI	TGGCCA	2 cut(s)	830, 1106
BanII	GRGCYC	1 cut(s)	1549
BbsI	GAAGAC	2 cut(s)	630, 686
Bbv12I	GWGCWC	2 cut(s)	1347, 1549
BbvI	GCAGC	9 cut(s)	265, 293, 454, 482, 746, 1204, 1422, 1602, 1641
BccI	CCATC	5 cut(s)	275, 527, 577, 1096, 1140
BceAI	ACGGC	2 cut(s)	537, 1614
BciT130I	CCWGG	3 cut(s)	540, 1276, 1669
BciVI	GTATCC	1 cut(s)	870
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	2 cut(s)	1046, 1354
BfaI	CTAG	3 cut(s)	285, 1118, 1181
BfmI	CTRYAG	5 cut(s)	64, 255, 279, 468, 717
BfuAI	ACCTGC	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	870
BglII	AGATCT	1 cut(s)	656
BlpI	GCTNAGC	1 cut(s)	1223
BmcAI	AGTACT	1 cut(s)	1305
Bme1390I	CCNGG	4 cut(s)	540, 702, 1276, 1669
Bme18I	GGWCC	3 cut(s)	536, 1459, 1713
BmgT120I	GGNCC	3 cut(s)	536, 1459, 1713
BmiI	GGNNCC	1 cut(s)	1461
BmrFI	CCNGG	4 cut(s)	540, 702, 1276, 1669
BmsI	GCATC	6 cut(s)	22, 100, 184, 450, 1188, 1219
BmtI	GCTAGC	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	630, 686
BpmI	CTGGAG	1 cut(s)	1571
Bpu10I	CCTNAGC	1 cut(s)	1341
Bpu1102I	GCTNAGC	1 cut(s)	1223
BpuEI	CTTGAG	1 cut(s)	1235
BpuMI	CCSGG	1 cut(s)	702
Bsa29I	ATCGAT	2 cut(s)	138, 178
BsaHI	GRCGYC	2 cut(s)	84, 165
BsaJI	CCNNGG	1 cut(s)	931
BsaWI	WCCGGW	2 cut(s)	379, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	1058, 1088
Bsc4I	CCNNNNNNNGG	3 cut(s)	575, 701, 1398
Bse118I	RCCGGY	2 cut(s)	113, 1779
Bse1I	ACTGG	4 cut(s)	389, 615, 885, 1234
Bse3DI	GCAATG	1 cut(s)	1723
BseBI	CCWGG	3 cut(s)	540, 1276, 1669
BseCI	ATCGAT	2 cut(s)	138, 178
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	4 cut(s)	481, 548, 1230, 1664
BseLI	CCNNNNNNNGG	3 cut(s)	575, 701, 1398
BseMI	GCAATG	1 cut(s)	1723
BseMII	CTCAG	3 cut(s)	1214, 1236, 1332
BseNI	ACTGG	4 cut(s)	389, 615, 885, 1234
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	9 cut(s)	265, 293, 454, 482, 746, 1204, 1422, 1602, 1641
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	1443
BshFI	GGCC	4 cut(s)	830, 1106, 1274, 1391
BshVI	ATCGAT	2 cut(s)	138, 178
BsiHKAI	GWGCWC	2 cut(s)	1347, 1549
BsiSI	CCGG	5 cut(s)	114, 380, 676, 702, 1780
BslI	CCNNNNNNNGG	3 cut(s)	575, 701, 1398
BsmAI	GTCTC	2 cut(s)	1046, 1354
BsnI	GGCC	4 cut(s)	830, 1106, 1274, 1391
Bsp1286I	GDGCHC	2 cut(s)	1347, 1549
Bsp143I	GATC	2 cut(s)	565, 656
Bsp1720I	GCTNAGC	1 cut(s)	1223
BspACI	CCGC	6 cut(s)	72, 87, 90, 168, 298, 1045
BspANI	GGCC	4 cut(s)	830, 1106, 1274, 1391
BspCNI	CTCAG	3 cut(s)	1215, 1237, 1333
BspDI	ATCGAT	2 cut(s)	138, 178
BspLI	GGNNCC	1 cut(s)	1461
BspMAI	CTGCAG	2 cut(s)	283, 472
BspMI	ACCTGC	1 cut(s)	497
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	1723
BsrFI	RCCGGY	2 cut(s)	113, 1779
BsrI	ACTGG	4 cut(s)	389, 615, 885, 1234
BssAI	RCCGGY	2 cut(s)	113, 1779
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	2 cut(s)	565, 656
BssNI	GRCGYC	2 cut(s)	84, 165
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	3 cut(s)	540, 1276, 1669
Bst6I	CTCTTC	4 cut(s)	450, 1090, 1449, 1633
BstACI	GRCGYC	2 cut(s)	84, 165
BstAPI	GCANNNNNTGC	2 cut(s)	1198, 1207
BstC8I	GCNNGC	6 cut(s)	115, 286, 465, 983, 1588, 1627
BstDEI	CTNAG	3 cut(s)	1223, 1245, 1341
BstF5I	GGATG	4 cut(s)	481, 548, 1230, 1664
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	2 cut(s)	568, 659
BstMAI	GTCTC	2 cut(s)	1046, 1354
BstMBI	GATC	2 cut(s)	565, 656
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 906, 1198, 1207, 1767, 1776
BstNI	CCWGG	3 cut(s)	540, 1276, 1669
BstNSI	RCATGY	2 cut(s)	467, 1355
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	4 cut(s)	538, 700, 1274, 1667
BstSFI	CTRYAG	5 cut(s)	64, 255, 279, 468, 717
BstV1I	GCAGC	9 cut(s)	265, 293, 454, 482, 746, 1204, 1422, 1602, 1641
BstV2I	GAAGAC	2 cut(s)	630, 686
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
Bsu15I	ATCGAT	2 cut(s)	138, 178
BsuI	GTATCC	1 cut(s)	870
BsuRI	GGCC	4 cut(s)	830, 1106, 1274, 1391
BsuTUI	ATCGAT	2 cut(s)	138, 178
BtgZI	GCGATG	1 cut(s)	788
BtsCI	GGATG	4 cut(s)	481, 548, 1230, 1664
BtsIMutI	CAGTG	6 cut(s)	195, 264, 831, 856, 1241, 1752
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	6 cut(s)	115, 286, 465, 983, 1588, 1627
CaiI	CAGNNNCTG	1 cut(s)	1754
CfoI	GCGC	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	113, 1779
Cfr13I	GGNCC	3 cut(s)	536, 1459, 1713
ClaI	ATCGAT	2 cut(s)	138, 178
CseI	GACGC	2 cut(s)	92, 173
Csp6I	GTAC	4 cut(s)	326, 789, 1126, 1304
CviAII	CATG	6 cut(s)	329, 464, 498, 999, 1010, 1352
CviQI	GTAC	4 cut(s)	326, 789, 1126, 1304
DdeI	CTNAG	3 cut(s)	1223, 1245, 1341
DpnI	GATC	2 cut(s)	567, 658
DpnII	GATC	2 cut(s)	565, 656
DrdI	GACNNNNNNGTC	1 cut(s)	1703
DseDI	GACNNNNNNGTC	1 cut(s)	1703
EaeI	YGGCCR	2 cut(s)	828, 1104
Eam1104I	CTCTTC	4 cut(s)	450, 1090, 1449, 1633
EarI	CTCTTC	4 cut(s)	450, 1090, 1449, 1633
Ecl136II	GAGCTC	1 cut(s)	1547
Eco130I	CCWWGG	1 cut(s)	931
Eco147I	AGGCCT	1 cut(s)	1274
Eco24I	GRGCYC	1 cut(s)	1549
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	3 cut(s)	536, 1459, 1713
Eco53kI	GAGCTC	1 cut(s)	1547
Eco57I	CTGAAG	2 cut(s)	813, 1277
EcoICRI	GAGCTC	1 cut(s)	1547
EcoO109I	RGGNCCY	1 cut(s)	1459
EcoRII	CCWGG	3 cut(s)	538, 1274, 1667
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	931
EcoT22I	ATGCAT	2 cut(s)	465, 945
EcoT38I	GRGCYC	1 cut(s)	1549
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	6 cut(s)	332, 467, 501, 1002, 1013, 1355
FatI	CATG	6 cut(s)	328, 463, 497, 998, 1009, 1351
FauNDI	CATATG	1 cut(s)	1318
FokI	GGATG	4 cut(s)	468, 555, 1217, 1651
FriOI	GRGCYC	1 cut(s)	1549
FspBI	CTAG	3 cut(s)	285, 1118, 1181
GlaI	GCGC	1 cut(s)	557
GsaI	CCCAGC	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	1571
HaeIII	GGCC	4 cut(s)	830, 1106, 1274, 1391
HapII	CCGG	5 cut(s)	114, 380, 676, 702, 1780
HgaI	GACGC	2 cut(s)	92, 173
HhaI	GCGC	1 cut(s)	558
Hin1I	GRCGYC	2 cut(s)	84, 165
Hin1II	CATG	6 cut(s)	332, 467, 501, 1002, 1013, 1355
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	8 cut(s)	5, 146, 155, 494, 857, 1247, 1394, 1574
HpaII	CCGG	5 cut(s)	114, 380, 676, 702, 1780
HphI	GGTGA	2 cut(s)	1025, 1397
Hpy166II	GTNNAC	3 cut(s)	224, 1128, 1573
Hpy188I	TCNGA	5 cut(s)	10, 151, 862, 1006, 1567
Hpy188III	TCNNGA	6 cut(s)	230, 563, 1118, 1167, 1214, 1550
Hpy8I	GTNNAC	3 cut(s)	224, 1128, 1573
Hpy99I	CGWCG	6 cut(s)	56, 80, 83, 86, 110, 155
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 906, 1198, 1207, 1767, 1776
HpyF3I	CTNAG	3 cut(s)	1223, 1245, 1341
Hsp92I	GRCGYC	2 cut(s)	84, 165
Hsp92II	CATG	6 cut(s)	332, 467, 501, 1002, 1013, 1355
HspAI	GCGC	1 cut(s)	556
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	565, 656
LmnI	GCTCC	4 cut(s)	300, 703, 1432, 1685
Lsp1109I	GCAGC	9 cut(s)	265, 293, 454, 482, 746, 1204, 1422, 1602, 1641
LweI	GCATC	6 cut(s)	22, 100, 184, 450, 1188, 1219
MaeI	CTAG	3 cut(s)	285, 1118, 1181
MaeIII	GTNAC	7 cut(s)	491, 644, 751, 1040, 1248, 1278, 1513
MalI	GATC	2 cut(s)	567, 658
MboI	GATC	2 cut(s)	565, 656
MboII	GAAGA	9 cut(s)	362, 467, 635, 691, 806, 856, 1107, 1466, 1650
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	2 cut(s)	1347, 1549
MlsI	TGGCCA	2 cut(s)	830, 1106
MluCI	AATT	7 cut(s)	307, 421, 525, 871, 886, 968, 1534
MluNI	TGGCCA	2 cut(s)	830, 1106
MlyI	GAGTC	5 cut(s)	140, 488, 1256, 1403, 1568
MmeI	TCCRAC	2 cut(s)	174, 1383
Mox20I	TGGCCA	2 cut(s)	830, 1106
Mph1103I	ATGCAT	2 cut(s)	465, 945
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	357, 1410
MscI	TGGCCA	2 cut(s)	830, 1106
MseI	TTAA	5 cut(s)	420, 528, 548, 603, 1476
MslI	CAYNNNNRTG	2 cut(s)	1350, 1419
Msp20I	TGGCCA	2 cut(s)	830, 1106
MspA1I	CMGCKG	1 cut(s)	1255
MspI	CCGG	5 cut(s)	114, 380, 676, 702, 1780
MspR9I	CCNGG	4 cut(s)	540, 702, 1276, 1669
MvaI	CCWGG	3 cut(s)	540, 1276, 1669
MwoI	GCNNNNNNNGC	6 cut(s)	119, 906, 1198, 1207, 1767, 1776
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	702
NdeI	CATATG	1 cut(s)	1318
NdeII	GATC	2 cut(s)	565, 656
NgoMIV	GCCGGC	1 cut(s)	113
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	6 cut(s)	332, 467, 501, 1002, 1013, 1355
NlaIV	GGNNCC	1 cut(s)	1461
NmeAIII	GCCGAG	1 cut(s)	1417
NmuCI	GTSAC	3 cut(s)	491, 1248, 1513
NsiI	ATGCAT	2 cut(s)	465, 945
NspI	RCATGY	2 cut(s)	467, 1355
PaeI	GCATGC	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	1274
PcsI	WCGNNNNNNNCGW	7 cut(s)	27, 36, 51, 114, 135, 150, 1704
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	357, 1410
PfeI	GAWTC	3 cut(s)	5, 155, 857
PflMI	CCANNNNNTGG	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	538
PleI	GAGTC	5 cut(s)	140, 488, 1255, 1402, 1568
PpsI	GAGTC	5 cut(s)	140, 488, 1255, 1402, 1568
PpuMI	RGGWCCY	1 cut(s)	1459
PshAI	GACNNNNGTC	1 cut(s)	219
PshBI	ATTAAT	2 cut(s)	528, 603
Psp124BI	GAGCTC	1 cut(s)	1549
Psp5II	RGGWCCY	1 cut(s)	1459
Psp6I	CCWGG	3 cut(s)	538, 1274, 1667
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	3 cut(s)	538, 1274, 1667
PspN4I	GGNNCC	1 cut(s)	1461
PspPI	GGNCC	3 cut(s)	536, 1459, 1713
PspPPI	RGGWCCY	1 cut(s)	1459
PstI	CTGCAG	2 cut(s)	283, 472
PstNI	CAGNNNCTG	1 cut(s)	1754
PsuI	RGATCY	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	1255
RsaI	GTAC	4 cut(s)	327, 790, 1127, 1305
RsaNI	GTAC	4 cut(s)	326, 789, 1126, 1304
RseI	CAYNNNNRTG	2 cut(s)	1350, 1419
SacI	GAGCTC	1 cut(s)	1549
SaqAI	TTAA	5 cut(s)	420, 528, 548, 603, 1476
Sau3AI	GATC	2 cut(s)	565, 656
Sau96I	GGNCC	3 cut(s)	536, 1459, 1713
ScaI	AGTACT	1 cut(s)	1305
SchI	GAGTC	5 cut(s)	140, 488, 1256, 1403, 1568
ScrFI	CCNGG	4 cut(s)	540, 702, 1276, 1669
SduI	GDGCHC	2 cut(s)	1347, 1549
SfaNI	GCATC	6 cut(s)	22, 100, 184, 450, 1188, 1219
SfcI	CTRYAG	5 cut(s)	64, 255, 279, 468, 717
SinI	GGWCC	3 cut(s)	536, 1459, 1713
SmiMI	CAYNNNNRTG	2 cut(s)	1350, 1419
SmlI	CTYRAG	1 cut(s)	1214
SmoI	CTYRAG	1 cut(s)	1214
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	7 cut(s)	307, 421, 525, 871, 886, 968, 1534
SseBI	AGGCCT	1 cut(s)	1274
SsiI	CCGC	6 cut(s)	72, 87, 90, 168, 298, 1045
SspI	AATATT	2 cut(s)	638, 1693
SspMI	CTAG	3 cut(s)	285, 1118, 1181
SstI	GAGCTC	1 cut(s)	1549
StuI	AGGCCT	1 cut(s)	1274
StyD4I	CCNGG	4 cut(s)	538, 700, 1274, 1667
StyI	CCWWGG	1 cut(s)	931
TaqI	TCGA	5 cut(s)	21, 138, 178, 666, 1543
TasI	AATT	7 cut(s)	307, 421, 525, 871, 886, 968, 1534
TatI	WGTACW	3 cut(s)	325, 788, 1303
TauI	GCSGC	4 cut(s)	75, 89, 92, 170
TfiI	GAWTC	3 cut(s)	5, 155, 857
Tru1I	TTAA	5 cut(s)	420, 528, 548, 603, 1476
Tru9I	TTAA	5 cut(s)	420, 528, 548, 603, 1476
TscAI	CASTG	6 cut(s)	202, 264, 831, 856, 1241, 1759
TseFI	GTSAC	3 cut(s)	491, 1248, 1513
TseI	GCWGC	9 cut(s)	278, 281, 467, 470, 759, 1192, 1435, 1590, 1629
Tsp45I	GTSAC	3 cut(s)	491, 1248, 1513
TspDTI	ATGAA	9 cut(s)	124, 363, 621, 636, 756, 884, 1252, 1403, 1467
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	6 cut(s)	202, 264, 831, 856, 1241, 1759
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	3 cut(s)	536, 1459, 1713
VspI	ATTAAT	2 cut(s)	528, 603
XapI	RAATTY	2 cut(s)	968, 1534
XbaI	TCTAGA	1 cut(s)	1117
XceI	RCATGY	2 cut(s)	467, 1355
XmnI	GAANNNNTTC	2 cut(s)	357, 1410
XspI	CTAG	3 cut(s)	285, 1118, 1181
ZrmI	AGTACT	1 cut(s)	1305
Zsp2I	ATGCAT	2 cut(s)	465, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.