Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Forward (+)

14036195 .. 14038725

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACTTCAAGGAATTACACACACGATCAGCCTCTTCTCTTCCTCTTCCTCTTCCTCTTCCTCGACCAGCCTCTTCTCCCTCAACTGTCTCTCTCTCTCTCTCTCTCTCTCTCGGTGCTAGGACGACATCTAGTGTACCATCGGCGCCTCCACCTTTGCTCTCCCCCTGGTGGCCACCATGGTGTCCTGCTGCAGGCTGTGATTATGCTATAGATTTTATTGTTGGTTGTGGAAGCTATGATGTTACTTGCCGCTGTTCATATAGCTTCTGCTGGAAATGTACTGTAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAAATGGATATTGAAGAACAGTGCCGAATCTGAAAATATGAATTGGCTCTGTCTTGGTGCATGGTCAGAACATGGTGAAAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCGAAGCAGGAGGGAGTGTATGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGTGGAACAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

173

Amino Acids

19.17

Weight (kDa)

6.8

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	61 - 104	4.9e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	2 cut(s)	253, 430
AcoI	YGGCCR	3 cut(s)	173, 321, 489
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	138, 283
AfiI	CCNNNNNNNGG	2 cut(s)	171, 194
AgsI	TTSAA	2 cut(s)	10, 337
AjnI	CCWGG	1 cut(s)	167
AleI	CACNNNNGTG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	237, 267, 293
AluI	AGCT	3 cut(s)	237, 267, 293
Alw26I	GTCTC	2 cut(s)	94, 431
AoxI	GGCC	3 cut(s)	173, 321, 489
ApeKI	GCWGC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	410
BalI	TGGCCA	3 cut(s)	175, 323, 491
BanI	GGYRCC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	148, 481
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	94, 431
BfaI	CTAG	3 cut(s)	120, 132, 503
BfmI	CTRYAG	3 cut(s)	192, 210, 285
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	2 cut(s)	192, 253
BlsI	GCNGC	2 cut(s)	193, 254
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	167, 179
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 194
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	167, 179
BseLI	CCNNNNNNNGG	2 cut(s)	171, 194
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	175, 323, 491
BshNI	GGYRCC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	171, 194
BsmAI	GTCTC	2 cut(s)	94, 431
BsnI	GGCC	3 cut(s)	175, 323, 491
Bsp143I	GATC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	2 cut(s)	253, 430
BspANI	GGCC	3 cut(s)	175, 323, 491
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	167, 179
BssMI	GATC	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	4 cut(s)	88, 286, 319, 344
Bst6I	CTCTTC	7 cut(s)	40, 45, 51, 57, 63, 79, 475
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	179
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	94, 431
BstMBI	GATC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	192, 210, 285
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	175, 323, 491
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	324, 349
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	137, 282
CviAII	CATG	3 cut(s)	180, 384, 395
CviQI	GTAC	2 cut(s)	137, 282
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
EaeI	YGGCCR	3 cut(s)	173, 321, 489
Eam1104I	CTCTTC	7 cut(s)	40, 45, 51, 57, 63, 79, 475
EarI	CTCTTC	7 cut(s)	40, 45, 51, 57, 63, 79, 475
Eco130I	CCWWGG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	3 cut(s)	183, 387, 398
FatI	CATG	3 cut(s)	179, 383, 394
Fnu4HI	GCNGC	2 cut(s)	192, 253
Fsp4HI	GCNGC	2 cut(s)	192, 253
FspBI	CTAG	3 cut(s)	120, 132, 503
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	192, 253
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	175, 323, 491
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	183, 387, 398
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	355, 391
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	137
HpyCH4III	ACNGT	4 cut(s)	88, 286, 319, 344
HpyCH4V	TGCA	2 cut(s)	194, 383
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	183, 387, 398
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	26
LpnPI	CCDG	9 cut(s)	81, 154, 180, 181, 201, 259, 393, 434, 436
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	3 cut(s)	120, 132, 503
MaeIII	GTNAC	2 cut(s)	244, 425
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	8 cut(s)	27, 32, 38, 44, 50, 66, 349, 492
MlsI	TGGCCA	3 cut(s)	175, 323, 491
MluCI	AATT	3 cut(s)	14, 364, 515
MluNI	TGGCCA	3 cut(s)	175, 323, 491
Mly113I	GGCGCC	1 cut(s)	146
Mox20I	TGGCCA	3 cut(s)	175, 323, 491
MscI	TGGCCA	3 cut(s)	175, 323, 491
MslI	CAYNNNNRTG	1 cut(s)	181
Msp20I	TGGCCA	3 cut(s)	175, 323, 491
MspA1I	CMGCKG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	183, 387, 398
NlaIV	GGNNCC	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	193, 254
PluTI	GGCGCC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	138, 283
RsaNI	GTAC	2 cut(s)	137, 282
RseI	CAYNNNNRTG	1 cut(s)	181
SatI	GCNGC	2 cut(s)	192, 253
Sau3AI	GATC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	5 cut(s)	157, 239, 269, 295, 412
SfcI	CTRYAG	3 cut(s)	192, 210, 285
SfoI	GGCGCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	14, 364, 515
SsiI	CCGC	2 cut(s)	253, 430
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	3 cut(s)	120, 132, 503
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	4 cut(s)	88, 286, 319, 344
TaqI	TCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	14, 364, 515
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	350
TscAI	CASTG	2 cut(s)	324, 349
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	17, 249, 377
TspRI	CASTG	2 cut(s)	324, 349
XagI	CCTNNNNNAGG	1 cut(s)	192
XbaI	TCTAGA	1 cut(s)	502
XspI	CTAG	3 cut(s)	120, 132, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.