Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Reverse (-)

24080887 .. 24082527

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTCAGCCTTCTAAGGCTATGTTTGGGGGAGCTTTTAAGCGCCCCTGCTTATAAGCACAACCTACTTTGGTGTTTGGTAAAGTTCCTAACAGCCAGCTTCTCTACGAAGCACGGGCTTTTTGGACGTAAAAGCAGAAGCCACTCTAGGCCTGCTTTTAGAAGCCAGAAGCCGCGAATTACACACACGACCAGCCTCTTCTCTTCCTCTTCCTCGACCAGTTCTTCTCCCTCAACTGTCTCTCTCTCTCTCTCGGTGCTAGGACGACATCTTGTGCACCATCGGCGCCTCCACCTTTGCTCTCCCTGGTGGCCACCATGGTGTCCTGCTCCAGGCTGTGATTATGCTATATATTTTATTGTTGGTAGTGGAAGCTATGATGTTACTTGCCGCTGTTCATATAGCTTTTGCTGGAAATGTACTGAAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAACTGGATATTGAAGAACAGTGCCGAATCTGAAAATATGAATTGGATATTGGCTAATTCCAAGCCTTGCCCCAAGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

181

Amino Acids

20.34

Weight (kDa)

9.43

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	107 - 150	5e-11	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	285
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	173, 391
AcoI	YGGCCR	2 cut(s)	311, 459
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	305, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AleI	CACNNNNGTG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	34, 99, 375, 405, 431
AluI	AGCT	5 cut(s)	34, 99, 375, 405, 431
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	275
AoxI	GGCC	3 cut(s)	149, 311, 459
ApaLI	GTGCAC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	44, 288
BaeGI	GKGCMC	1 cut(s)	279
BalI	TGGCCA	2 cut(s)	313, 461
BanI	GGYRCC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	307, 333
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	147, 260
BfoI	RGCGCY	2 cut(s)	45, 289
BisI	GCNGC	2 cut(s)	173, 391
BlsI	GCNGC	2 cut(s)	174, 392
Bme1390I	CCNGG	2 cut(s)	307, 333
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	307, 333
BpmI	CTGGAG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	305, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	219, 470
BseBI	CCWGG	2 cut(s)	307, 333
BseDI	CCNNGG	2 cut(s)	305, 317
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	219, 470
BseSI	GKGCMC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	151, 313, 461
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	151, 313, 461
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	2 cut(s)	173, 391
BspANI	GGCC	3 cut(s)	151, 313, 461
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	219, 470
BssECI	CCNNGG	2 cut(s)	305, 317
BssNI	GRCGYC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	307, 333
Bst4CI	ACNGT	3 cut(s)	238, 457, 482
Bst6I	CTCTTC	3 cut(s)	203, 208, 214
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	97, 153
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	2 cut(s)	45, 289
BstHHI	GCGC	2 cut(s)	44, 288
BstMAI	GTCTC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 537
BstNI	CCWGG	2 cut(s)	307, 333
BstSCI	CCNGG	2 cut(s)	305, 331
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	151, 313, 461
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	462, 487
Cac8I	GCNNGC	2 cut(s)	97, 153
CfoI	GCGC	2 cut(s)	44, 288
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	1 cut(s)	318
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	1 cut(s)	14
DinI	GGCGCC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	311, 459
Eam1104I	CTCTTC	3 cut(s)	203, 208, 214
EarI	CTCTTC	3 cut(s)	203, 208, 214
Eco130I	CCWWGG	1 cut(s)	317
Eco147I	AGGCCT	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	305, 331
EcoT14I	CCWWGG	1 cut(s)	317
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	321
FatI	CATG	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	173, 391
Fsp4HI	GCNGC	2 cut(s)	173, 391
FspBI	CTAG	2 cut(s)	147, 260
GlaI	GCGC	2 cut(s)	43, 287
GluI	GCNGC	2 cut(s)	173, 391
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	2 cut(s)	45, 289
HaeIII	GGCC	3 cut(s)	151, 313, 461
HhaI	GCGC	2 cut(s)	44, 288
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	2 cut(s)	42, 286
HinP1I	GCGC	2 cut(s)	42, 286
HinfI	GANTC	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	238, 457, 482
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	277, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 537
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	127
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	2 cut(s)	42, 286
KasI	GGCGCC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	31, 334
MaeI	CTAG	2 cut(s)	147, 260
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	382
MboII	GAAGA	6 cut(s)	190, 195, 201, 216, 437, 487
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	2 cut(s)	313, 461
MluCI	AATT	3 cut(s)	177, 502, 517
MluNI	TGGCCA	2 cut(s)	313, 461
Mly113I	GGCGCC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	206, 217, 223, 241, 299
Mox20I	TGGCCA	2 cut(s)	313, 461
MscI	TGGCCA	2 cut(s)	313, 461
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	319
Msp20I	TGGCCA	2 cut(s)	313, 461
MspA1I	CMGCKG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	307, 333
MvaI	CCWGG	2 cut(s)	307, 333
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	283, 537
NarI	GGCGCC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	317
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	174, 392
PluTI	GGCGCC	1 cut(s)	289
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	305, 331
PspGI	CCWGG	2 cut(s)	305, 331
PspN4I	GGNNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	173, 391
ScrFI	CCNGG	2 cut(s)	307, 333
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	8 cut(s)	36, 66, 101, 130, 297, 377, 407, 433
SfoI	GGCGCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	3 cut(s)	177, 502, 517
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	173, 391
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	147, 260
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	305, 331
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	3 cut(s)	238, 457, 482
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	177, 502, 517
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	2 cut(s)	175, 393
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	2 cut(s)	462, 487
TspDTI	ATGAA	2 cut(s)	387, 515
TspRI	CASTG	2 cut(s)	462, 487
VneI	GTGCAC	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	330
XspI	CTAG	2 cut(s)	147, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.