FvH4_6g00591

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017317
Physical Location & Seq
Reverse (-)
346707 .. 347436
730 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00591.t1

Sequence Viewer

Length: 714 bp
ATGGATGAGCCGTATGATTCCAGGATTTTCAATTGGTGTGAAGTGAAGCAAACAGAATTACACGAGGGACCCTATCCGCCACCATCACAGCGCTACGCCGTGCTCATCAGAATAACACTCATCTTGCAATCTGGGGGTTTTCAGATACAGACCAAACCACCGCATTCTTTTATGTACAACTTTTGTCCAGAGGTAACTCTCATAGGGAAATCAAAGATTTGGGTCAACTTCATGTCCGCAGATGAACGAGGTAAGAGCATCATGTACTTGGTGACTGCCCTTCGTCGCATGGGCCTTCGGTTAAAAGAACTGGCAGATATAGTCAATGAAATATCTGACAAAGTTGAACCGCCCATCCACCTCCCGCAGTTGGCTGTTGATATGACCATAAGGCTTATCTGTTGTGAACTGCATGGAAGCTTTGACGGTTACGATGATATGCGCTTGTATCGCTGGGTGAAGAAATCATGGGACGACTCTAGGACCTCTTGCGTTATGCCTCCATCATCATCATCATGCGCTGTTTGTTTGGAGGACTTTGGTGGTGGTGTTGATGATAAGATGATAGCTCGTTTGCCCTGCTCGCATTATTTTCATGCTGATTGCACTGCACAGTGGGTTGTGGATCATCACACGTGTCCCTTGTGCCGAAGCCAACTGATGCCACTTCTTTCTGATGATGAAAATGAACACTTCAATCCTAACCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

238

Amino Acids

27.16

Weight (kDa)

5.56

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 172 - 217 1.4e-12 Ring finger domain
zf-RING_11 PF17123 173 - 202 1.3e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 173 - 216 2.9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 77, 161, 237, 350, 365
AclWI GGATC 1 cut(s) 633
AcvI CACGTG 1 cut(s) 636
AfaI GTAC 2 cut(s) 176, 266
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 2 cut(s) 633, 635
AgsI TTSAA 3 cut(s) 31, 347, 697
AjnI CCWGG 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
AluBI AGCT 2 cut(s) 420, 569
AluI AGCT 2 cut(s) 420, 569
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 1 cut(s) 633
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 292
AspLEI GCGC 3 cut(s) 93, 444, 521
AspS9I GGNCC 3 cut(s) 68, 292, 483
AsuHPI GGTGA 2 cut(s) 283, 469
AvaII GGWCC 2 cut(s) 68, 483
BauI CACGAG 1 cut(s) 62
BbrPI CACGTG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 3 cut(s) 91, 362, 511
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 22
BfaI CTAG 2 cut(s) 480, 708
BfoI RGCGCY 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 68, 483
BmgT120I GGNCC 3 cut(s) 68, 292, 483
BmiI GGNNCC 2 cut(s) 69, 70
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 267, 651
BsaAI YACGTR 1 cut(s) 636
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 10, 354
BseLI CCNNNNNNNGG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 3 cut(s) 81, 485, 624
BslI CCNNNNNNNGG 1 cut(s) 370
BsmFI GGGAC 3 cut(s) 81, 485, 624
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 625
BspACI CCGC 5 cut(s) 77, 161, 237, 350, 365
BspANI GGCC 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 69, 70
BspPI GGATC 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 315
BssMI GATC 1 cut(s) 625
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 428, 615
BstAUI TGTACA 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 636
BstC8I GCNNGC 1 cut(s) 584
BstF5I GGATG 2 cut(s) 10, 354
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 3 cut(s) 93, 444, 521
BstKTI GATC 1 cut(s) 628
BstMBI GATC 1 cut(s) 625
BstMWI GCNNNNNNNGC 2 cut(s) 450, 583
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 10, 354
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 2 cut(s) 606, 620
Cac8I GCNNGC 1 cut(s) 584
CfoI GCGC 3 cut(s) 93, 444, 521
Cfr13I GGNCC 3 cut(s) 68, 292, 483
Csp6I GTAC 2 cut(s) 175, 265
CviAII CATG 7 cut(s) 232, 262, 289, 413, 468, 516, 596
CviJI RGCY 7 cut(s) 10, 294, 374, 394, 420, 569, 654
CviKI_1 RGCY 7 cut(s) 10, 294, 374, 394, 420, 569, 654
CviQI GTAC 2 cut(s) 175, 265
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
EciI GGCGGA 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 68, 483
Eco47III AGCGCT 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 636
EcoO109I RGGNCCY 2 cut(s) 68, 483
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 7 cut(s) 235, 265, 292, 416, 471, 519, 599
FaqI GGGAC 3 cut(s) 81, 485, 624
FatI CATG 7 cut(s) 231, 261, 288, 412, 467, 515, 595
FauI CCCGC 1 cut(s) 372
FokI GGATG 2 cut(s) 17, 341
FspBI CTAG 2 cut(s) 480, 708
GlaI GCGC 3 cut(s) 92, 443, 520
GsaI CCCAGC 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 3 cut(s) 93, 444, 521
Hin1II CATG 7 cut(s) 235, 265, 292, 416, 471, 519, 599
Hin6I GCGC 3 cut(s) 91, 442, 519
HinP1I GCGC 3 cut(s) 91, 442, 519
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 2 cut(s) 17, 476
HphI GGTGA 2 cut(s) 283, 469
Hpy166II GTNNAC 2 cut(s) 226, 407
Hpy188I TCNGA 4 cut(s) 110, 144, 337, 676
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 226, 407
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 290, 305
HpyCH4III ACNGT 2 cut(s) 428, 615
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 4 cut(s) 127, 412, 606, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 583
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 7 cut(s) 235, 265, 292, 416, 471, 519, 599
HspAI GCGC 3 cut(s) 91, 442, 519
KflI GGGWCCC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 625
LpnPI CCDG 7 cut(s) 7, 34, 117, 201, 296, 439, 592
LweI GCATC 2 cut(s) 267, 651
MaeI CTAG 2 cut(s) 480, 708
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 3 cut(s) 193, 271, 428
MalI GATC 1 cut(s) 627
MboI GATC 1 cut(s) 625
MboII GAAGA 1 cut(s) 472
MfeI CAATTG 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 31, 56
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 7 cut(s) 58, 184, 242, 371, 496, 510, 526
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 450, 583
NdeII GATC 1 cut(s) 625
NlaIII CATG 7 cut(s) 235, 265, 292, 416, 471, 519, 599
NlaIV GGNNCC 2 cut(s) 69, 70
NmuCI GTSAC 1 cut(s) 271
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 20
PleI GAGTC 1 cut(s) 470
PmaCI CACGTG 1 cut(s) 636
PmlI CACGTG 1 cut(s) 636
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 636
PpuMI RGGWCCY 2 cut(s) 68, 483
Psp5II RGGWCCY 2 cut(s) 68, 483
Psp6I CCWGG 1 cut(s) 20
PspCI CACGTG 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 69, 70
PspPI GGNCC 3 cut(s) 68, 292, 483
PspPPI RGGWCCY 2 cut(s) 68, 483
RsaI GTAC 2 cut(s) 176, 266
RsaNI GTAC 2 cut(s) 175, 265
RseI CAYNNNNRTG 1 cut(s) 514
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 625
Sau96I GGNCC 3 cut(s) 68, 292, 483
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 195, 253, 363, 422, 488, 571, 638
SfaNI GCATC 2 cut(s) 267, 651
SinI GGWCC 2 cut(s) 68, 483
SmiMI CAYNNNNRTG 1 cut(s) 514
Sse9I AATT 2 cut(s) 31, 56
SsiI CCGC 5 cut(s) 77, 161, 237, 350, 365
SspMI CTAG 2 cut(s) 480, 708
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 428, 615
TaiI ACGT 1 cut(s) 638
TasI AATT 2 cut(s) 31, 56
TatI WGTACW 2 cut(s) 174, 264
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 613, 620
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 220, 258, 342, 584, 696, 702
TspRI CASTG 2 cut(s) 613, 620
VpaK11BI GGWCC 2 cut(s) 68, 483
XspI CTAG 2 cut(s) 480, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.