FvH4_6g00620

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017317
Physical Location & Seq
Reverse (-)
360849 .. 362050
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00620.t1

Sequence Viewer

Length: 729 bp
ATGGATGAGCCGTATGATTCCAGGATTTTCAATTGGTGTGAAGTGAAGCAAACAGAATTACACGAGGGACCCTATCCGCCACCATCACAGCGCTACGCCGTGCTCATCAGATTAACAGTCATCTTGCAATCTGGGGGTTTTCAGATACAGACGAAACCACCTCATTCTTTTATGTACAACTTTTGTCCAGACGTAACTCTCATAGGGAAATCAAAGATTTGGGTCAACTTCATGTCCGCAGATGAACGAGGTAAGAGCATCATGTACTTGGTGACTGCCCTTCGTCGCATGGGCCTTCGGTTAAAAGAACTGGCAGATATAGTCAAAGAAATATCTGACAAAGTTGAACCGCCCATCCACCTCCCGCAGTTGGCTGTTGATGTGACCGTAAGGCTTATCTGTTGTGAACTGCATGGAAGTTTTGACGGTTACGATGATATGCGCTTGTATCGCTGGGTGAAGAAATCATGGGACGACTCTAGGGCTGCTGCTCCTACCTCTTGCGCTATGCCTCCATCATCATGTGCTGTTTGTTTGGAGGAGTTTGGAGGTGGTGTTGATGATAAAATGATTGCTCGTTTGCCTTGCTCGCATTTTTTTCATGCTGATTGCATTGCACAGTGGGTGGTGGATCGTCACACGTGTCCAGTGTGCCGAACCCAAATGATACCACTTCTGTGTGATGATGAAAATCAACCCTTCGATCCAAACCCTACCTGGTCCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ zf-RING_2

Protein Analysis

243

Amino Acids

27.63

Weight (kDa)

5.51

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 174 - 219 1.7e-13 Ring finger domain
zf-RING_11 PF17123 175 - 205 1.3e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 175 - 218 3.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 175 - 216 7.9e-07 RING-type zinc-finger
zf-RING_5 PF14634 175 - 220 3.6e-06 zinc-RING finger domain
zf-rbx1 PF12678 189 - 219 1.1e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 77, 237, 350, 365
AclWI GGATC 2 cut(s) 639, 698
AcvI CACGTG 1 cut(s) 642
AfaI GTAC 2 cut(s) 176, 266
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 2 cut(s) 639, 641
AgsI TTSAA 2 cut(s) 31, 347
AjnI CCWGG 2 cut(s) 20, 716
AleI CACNNNNGTG 1 cut(s) 676
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 2 cut(s) 639, 698
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 485, 488
AspLEI GCGC 3 cut(s) 93, 444, 506
AspS9I GGNCC 3 cut(s) 68, 292, 720
AsuHPI GGTGA 2 cut(s) 283, 469
AvaII GGWCC 2 cut(s) 68, 720
BauI CACGAG 1 cut(s) 62
BbrPI CACGTG 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 472, 475
BccI CCATC 3 cut(s) 91, 362, 523
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 22, 718
BfaI CTAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 94
BisI GCNGC 2 cut(s) 486, 489
BlsI GCNGC 2 cut(s) 487, 490
Bme1390I CCNGG 2 cut(s) 22, 718
Bme18I GGWCC 2 cut(s) 68, 720
BmgT120I GGNCC 3 cut(s) 68, 292, 720
BmiI GGNNCC 2 cut(s) 69, 70
BmrFI CCNGG 2 cut(s) 22, 718
BmsI GCATC 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 690
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 315, 647
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 2 cut(s) 22, 718
BseGI GGATG 2 cut(s) 10, 354
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 612
BseNI ACTGG 2 cut(s) 315, 647
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 2 cut(s) 472, 475
BseYI CCCAGC 1 cut(s) 453
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 2 cut(s) 81, 485
BslI CCNNNNNNNGG 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 81, 485
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 631, 703
BspACI CCGC 4 cut(s) 77, 237, 350, 365
BspANI GGCC 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 69, 70
BspPI GGATC 2 cut(s) 639, 698
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 315, 647
BssMI GATC 2 cut(s) 631, 703
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 22, 718
Bst4CI ACNGT 4 cut(s) 118, 388, 428, 621
BstAUI TGTACA 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 590
BstF5I GGATG 2 cut(s) 10, 354
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 3 cut(s) 93, 444, 506
BstKTI GATC 2 cut(s) 634, 706
BstMBI GATC 2 cut(s) 631, 703
BstMWI GCNNNNNNNGC 2 cut(s) 450, 589
BstNI CCWGG 2 cut(s) 22, 718
BstSCI CCNGG 2 cut(s) 20, 716
BstV1I GCAGC 2 cut(s) 472, 475
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 10, 354
BtsIMutI CAGTG 2 cut(s) 626, 654
Cac8I GCNNGC 1 cut(s) 590
CfoI GCGC 3 cut(s) 93, 444, 506
Cfr13I GGNCC 3 cut(s) 68, 292, 720
CsiI ACCWGGT 1 cut(s) 716
Csp6I GTAC 2 cut(s) 175, 265
CviAII CATG 7 cut(s) 232, 262, 289, 413, 468, 522, 602
CviJI RGCY 5 cut(s) 10, 294, 374, 394, 485
CviKI_1 RGCY 5 cut(s) 10, 294, 374, 394, 485
CviQI GTAC 2 cut(s) 175, 265
DpnI GATC 2 cut(s) 633, 705
DpnII GATC 2 cut(s) 631, 703
EciI GGCGGA 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 68, 720
Eco47III AGCGCT 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 642
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 20, 716
FaeI CATG 7 cut(s) 235, 265, 292, 416, 471, 525, 605
FaqI GGGAC 2 cut(s) 81, 485
FatI CATG 7 cut(s) 231, 261, 288, 412, 467, 521, 601
FauI CCCGC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 486, 489
FokI GGATG 2 cut(s) 17, 341
Fsp4HI GCNGC 2 cut(s) 486, 489
FspBI CTAG 1 cut(s) 480
GlaI GCGC 3 cut(s) 92, 443, 505
GluI GCNGC 2 cut(s) 486, 489
GsaI CCCAGC 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 3 cut(s) 93, 444, 506
Hin1II CATG 7 cut(s) 235, 265, 292, 416, 471, 525, 605
Hin6I GCGC 3 cut(s) 91, 442, 504
HinP1I GCGC 3 cut(s) 91, 442, 504
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 17, 476
HphI GGTGA 2 cut(s) 283, 469
Hpy166II GTNNAC 2 cut(s) 226, 407
Hpy188I TCNGA 4 cut(s) 110, 144, 337, 724
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 226, 407
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 290, 305, 709
HpyCH4III ACNGT 4 cut(s) 118, 388, 428, 621
HpyCH4IV ACGT 2 cut(s) 192, 641
HpyCH4V TGCA 4 cut(s) 127, 412, 612, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 589
HpySE526I ACGT 2 cut(s) 192, 641
Hsp92II CATG 7 cut(s) 235, 265, 292, 416, 471, 525, 605
HspAI GCGC 3 cut(s) 91, 442, 504
KflI GGGWCCC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 631, 703
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 8 cut(s) 7, 34, 117, 201, 296, 439, 660, 703
Lsp1109I GCAGC 2 cut(s) 472, 475
LweI GCATC 1 cut(s) 267
MabI ACCWGGT 1 cut(s) 716
MaeI CTAG 1 cut(s) 480
MaeII ACGT 2 cut(s) 192, 641
MaeIII GTNAC 5 cut(s) 193, 271, 382, 428, 635
MalI GATC 2 cut(s) 633, 705
MboI GATC 2 cut(s) 631, 703
MboII GAAGA 1 cut(s) 472
MfeI CAATTG 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 31, 56
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 8 cut(s) 58, 171, 242, 371, 508, 522, 532, 542
MseI TTAA 2 cut(s) 113, 302
MslI CAYNNNNRTG 2 cut(s) 520, 676
MspR9I CCNGG 2 cut(s) 22, 718
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 2 cut(s) 22, 718
MwoI GCNNNNNNNGC 2 cut(s) 450, 589
NdeII GATC 2 cut(s) 631, 703
NlaIII CATG 7 cut(s) 235, 265, 292, 416, 471, 525, 605
NlaIV GGNNCC 2 cut(s) 69, 70
NmuCI GTSAC 3 cut(s) 271, 382, 635
OliI CACNNNNGTG 1 cut(s) 676
PfeI GAWTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 2 cut(s) 487, 490
PleI GAGTC 1 cut(s) 470
PmaCI CACGTG 1 cut(s) 642
PmlI CACGTG 1 cut(s) 642
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 642
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 20, 716
PspCI CACGTG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 2 cut(s) 20, 716
PspN4I GGNNCC 2 cut(s) 69, 70
PspPI GGNCC 3 cut(s) 68, 292, 720
PspPPI RGGWCCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 176, 266
RsaNI GTAC 2 cut(s) 175, 265
RseI CAYNNNNRTG 2 cut(s) 520, 676
SaqAI TTAA 2 cut(s) 113, 302
SatI GCNGC 2 cut(s) 486, 489
Sau3AI GATC 2 cut(s) 631, 703
Sau96I GGNCC 3 cut(s) 68, 292, 720
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 2 cut(s) 22, 718
SduI GDGCHC 1 cut(s) 105
SetI ASST 8 cut(s) 163, 195, 253, 363, 500, 553, 644, 719
SexAI ACCWGGT 1 cut(s) 716
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 2 cut(s) 68, 720
SmiMI CAYNNNNRTG 2 cut(s) 520, 676
Sse9I AATT 2 cut(s) 31, 56
SsiI CCGC 4 cut(s) 77, 237, 350, 365
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 20, 716
TaaI ACNGT 4 cut(s) 118, 388, 428, 621
TaiI ACGT 2 cut(s) 195, 644
TaqI TCGA 1 cut(s) 702
TasI AATT 2 cut(s) 31, 56
TatI WGTACW 2 cut(s) 174, 264
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 113, 302
Tru9I TTAA 2 cut(s) 113, 302
TscAI CASTG 2 cut(s) 626, 654
TseFI GTSAC 3 cut(s) 271, 382, 635
TseI GCWGC 2 cut(s) 485, 488
Tsp45I GTSAC 3 cut(s) 271, 382, 635
TspDTI ATGAA 4 cut(s) 220, 258, 590, 702
TspRI CASTG 2 cut(s) 626, 654
VpaK11BI GGWCC 2 cut(s) 68, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 714
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.