Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017317

Physical Location & Seq

Genomic Coordinates Reverse (-)

488634 .. 494833

Gene Structure 6200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATGAGCAGGTTAATTCCAGGATTTTTACGTGGTGTGAAGTGATGCAAACAGAAGTACACGAGGGACCCTACCCGCCAACATCACAATCCGACAACTTGCTCATCAGATTAAAACTCATCATGCAAGCAGGGGTTTTTAAGAGGGAGACCAATCAGGTGATTTGTTATTTTGATAAAGAACCAGGTATTTTAGACGAATCAAAGATTTGGATCAACTTCTCCTCTGAAGACAAACGATGTAGGAGTGCGAGAGACTTGGTTTATGCGCTTGCTTGTATGGCCGTTGAAAAAAAAGACCGGCGAGATATTGTTGAAGAAATATTGGAGAAAGCTGAACCGGCCATCCCCCTCCCCCAGTTGGCTATTGATGTGACCATAAGGATCATGTGTTGTGATTTGTATGGAAGTTTTGACGATTATGATGATATGTGCTTGTATAGCTATGTAAAGAAAACATGGGCCAAGTTTAAGGCTGCTACTACCTCCTGCGCTAGTTCTCATATGCCTCAATCATGTGCTGTTTGTTTGGAGGATTTTGGAGGTGGTGTTGATGATAAAATGATAGCTCGTTTGCCTTGCTTACATTATTTTCATGCAGATTGCACTGCCGAGTGGGTGAAGTTCCGTCAGACGTGTCCCGTGTGCCGAAGCCAAATAATGCCACTTCTATGTGATGAAAATGAACCCTTTAGTCCTAACCCTTGCCCTACTCAGTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

241

Amino Acids

27.51

Weight (kDa)

4.94

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	172 - 217	2.7e-12	Ring finger domain
zf-C3HC4_2	PF13923	173 - 216	9.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	173 - 202	4e-06	RING-like zinc finger
zf-rbx1	PF12678	185 - 217	5.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017317)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00591 FvH4_6g00620
rosa_chinensis	RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata	RLG00000025954
rosa_multiflora	Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii	Rroxscaffold_6G00426400
rosa_samantha	Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana	Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	221, 392
AcoI	YGGCCR	2 cut(s)	282, 342
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	290, 317
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	2 cut(s)	20, 184
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	335, 444, 569
AluI	AGCT	3 cut(s)	335, 444, 569
Alw26I	GTCTC	2 cut(s)	143, 249
AlwI	GGATC	2 cut(s)	221, 392
AoxI	GGCC	3 cut(s)	282, 342, 462
ApeKI	GCWGC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	271, 494
AspS9I	GGNCC	2 cut(s)	68, 462
AsuHPI	GGTGA	2 cut(s)	172, 631
AvaII	GGWCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	22, 186
BcoDI	GTCTC	2 cut(s)	143, 249
BfaI	CTAG	1 cut(s)	495
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	22, 186
Bme18I	GGWCC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	2 cut(s)	68, 462
BmiI	GGNNCC	2 cut(s)	69, 70
BmrFI	CCNGG	2 cut(s)	22, 186
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	2 cut(s)	300, 340
Bse1I	ACTGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	22, 186
BseGI	GGATG	2 cut(s)	10, 345
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	3 cut(s)	284, 344, 464
BsiSI	CCGG	2 cut(s)	301, 341
BslFI	GGGAC	2 cut(s)	81, 624
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	143, 249
BsmFI	GGGAC	2 cut(s)	81, 624
BsnI	GGCC	3 cut(s)	284, 344, 464
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	213, 384
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	284, 344, 464
BspLI	GGNNCC	2 cut(s)	69, 70
BspPI	GGATC	2 cut(s)	221, 392
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	300, 340
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	2 cut(s)	300, 340
BssMI	GATC	2 cut(s)	213, 384
BssSI	CACGAG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	22, 186
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	129, 273
BstDEI	CTNAG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	10, 345
BstHHI	GCGC	2 cut(s)	271, 494
BstKTI	GATC	2 cut(s)	216, 387
BstMAI	GTCTC	2 cut(s)	143, 249
BstMBI	GATC	2 cut(s)	213, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 341, 441
BstNI	CCWGG	2 cut(s)	22, 186
BstSCI	CCNGG	2 cut(s)	20, 184
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	284, 344, 464
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	10, 345
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	129, 273
CfoI	GCGC	2 cut(s)	271, 494
Cfr10I	RCCGGY	2 cut(s)	300, 340
Cfr13I	GGNCC	2 cut(s)	68, 462
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	5 cut(s)	124, 388, 459, 516, 596
CviJI	RGCY	9 cut(s)	284, 335, 344, 365, 444, 464, 476, 569, 654
CviKI_1	RGCY	9 cut(s)	284, 335, 344, 365, 444, 464, 476, 569, 654
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	2 cut(s)	215, 386
DpnII	GATC	2 cut(s)	213, 384
EaeI	YGGCCR	2 cut(s)	282, 342
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	20, 184
FaeI	CATG	5 cut(s)	127, 391, 462, 519, 599
FaqI	GGGAC	2 cut(s)	81, 624
FatI	CATG	5 cut(s)	123, 387, 458, 515, 595
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	17, 332
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	270, 493
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	284, 344, 464
HapII	CCGG	2 cut(s)	301, 341
HhaI	GCGC	2 cut(s)	271, 494
Hin1II	CATG	5 cut(s)	127, 391, 462, 519, 599
Hin6I	GCGC	2 cut(s)	269, 492
HinP1I	GCGC	2 cut(s)	269, 492
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	301, 341
HphI	GGTGA	2 cut(s)	172, 631
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	94, 110, 229, 633
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	32, 635
HpyCH4V	TGCA	5 cut(s)	49, 127, 599, 606, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 341, 441
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	2 cut(s)	32, 635
Hsp92II	CATG	5 cut(s)	127, 391, 462, 519, 599
HspAI	GCGC	2 cut(s)	269, 492
KflI	GGGWCCC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	213, 384
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	36
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	32, 635
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	215, 386
MboI	GATC	2 cut(s)	213, 384
MboII	GAAGA	2 cut(s)	242, 329
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	58, 138, 235, 362, 496, 519, 526, 536
MseI	TTAA	4 cut(s)	15, 113, 141, 471
MslI	CAYNNNNRTG	1 cut(s)	670
MspI	CCGG	2 cut(s)	301, 341
MspR9I	CCNGG	2 cut(s)	22, 186
MvaI	CCWGG	2 cut(s)	22, 186
MwoI	GCNNNNNNNGC	3 cut(s)	281, 341, 441
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	2 cut(s)	213, 384
NlaIII	CATG	5 cut(s)	127, 391, 462, 519, 599
NlaIV	GGNNCC	2 cut(s)	69, 70
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	20, 184
PspGI	CCWGG	2 cut(s)	20, 184
PspN4I	GGNNCC	2 cut(s)	69, 70
PspPI	GGNCC	2 cut(s)	68, 462
PspPPI	RGGWCCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	4 cut(s)	15, 113, 141, 471
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	213, 384
Sau96I	GGNCC	2 cut(s)	68, 462
ScrFI	CCNGG	2 cut(s)	22, 186
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	670
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	20, 184
TaiI	ACGT	2 cut(s)	35, 638
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	4 cut(s)	15, 113, 141, 471
Tru9I	TTAA	4 cut(s)	15, 113, 141, 471
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	584, 693, 699
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	68
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.