Rroxscaffold_6G00426400

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017317
Physical Location & Seq
Forward (+)
47141352 .. 47142650
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426400.1

Sequence Viewer

Length: 882 bp
ATGCAAAGCATCTTAACTTCCTGTTCCACCAAAGACCAAAGTCCTCGGTCGAGTTCCGCAGAAGGCAGAACCCTCTTTCATGAAACCCAGAGCCCTCTTTCAGTGTTCTCCTTGAGAGACAGAGAATCTCCTCCTGGATTCATGACTAGTCCGAGTCCGAGTCACTGGCAGGATGATGAAATGGAAAGTTCGAGCATGGATGAGCAGTGTGATTCCAGGATGTTTAAGTGGTGTGAAGTGATGCAAACAGAAGTACATGAGGGACCCTATCCGCCAACATCACAATGCTACGACTTGCTCATCAGATTAACAGTCCTCATGCAAGCGGGGGCTTTTATGATAGACACCAATCCACCTCATTCTTTTCTTTATAATTTTGATAAGGAACCATGTATATTAGGGGAATCAAAGATTTGGGTCAACTTGACCTCTATAGACAAACAAGATCAGAGCCAAACGGACTTGATGCTTGCGCTTTGTTTCATGGGCGTTGAGCAGAAAGACTGGGCAGGTATTGCTTTGGCTATTGATGTGACCGTAAGGCTCATGTGTTCTGAATTGTATGGAAGATTTGACGGTTATGATGATATGCGCTTGTATCGCTATGCAAAGAAATCATGGGACGACTATAGGGCTTCTACTACCTCCTGCACTGGTTCTCATATGCCTCCATCATCATGTGCTGTTTGTTTGGAGGATTTTGGAGGTGGAGTTGATGATAAAATGATTGTTCGTTTGCCCTGCTTACATTATTTTCATGCAGCTTGCACTGCCCGGTGGATTAATATCCGTCACACGTGTCCCGTGTGCCGAACCCAAATAATGCCACTTCTATGTGATGGGAATGAACCCTTCAATCCTAACCCTATCTGGCCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

293

Amino Acids

33.27

Weight (kDa)

4.91

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 226 - 271 2.2e-11 Ring finger domain
zf-C3HC4_2 PF13923 227 - 270 9.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 227 - 256 3.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 500
AciI CCGC 3 cut(s) 57, 272, 326
AcvI CACGTG 1 cut(s) 798
AfaI GTAC 1 cut(s) 255
AflIII ACRYGT 2 cut(s) 795, 797
AgsI TTSAA 1 cut(s) 856
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 2 cut(s) 133, 215
AluBI AGCT 1 cut(s) 764
AluI AGCT 1 cut(s) 764
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 872
ApeKI GCWGC 1 cut(s) 761
AseI ATTAAT 1 cut(s) 783
AspLEI GCGC 2 cut(s) 475, 594
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 775
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 95
BbrPI CACGTG 1 cut(s) 798
BbvI GCAGC 1 cut(s) 773
BccI CCATC 2 cut(s) 679, 833
BciT130I CCWGG 2 cut(s) 135, 217
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 111
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 2 cut(s) 432, 628
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 1 cut(s) 762
BlsI GCNGC 1 cut(s) 763
Bme1390I CCNGG 3 cut(s) 135, 217, 775
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 264, 265, 387
BmrFI CCNGG 3 cut(s) 135, 217, 775
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 3 cut(s) 18, 231, 456
BmuI ACTGGG 1 cut(s) 514
BoxI GACNNNNGTC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 775
BsaAI YACGTR 1 cut(s) 798
BsaBI GATNNNNATC 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bse1I ACTGG 3 cut(s) 170, 509, 658
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 2 cut(s) 135, 217
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 3 cut(s) 178, 205, 225
BseJI GATNNNNATC 1 cut(s) 785
BseNI ACTGG 3 cut(s) 170, 509, 658
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 773
BsgI GTGCAG 1 cut(s) 634
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 874
BsiEI CGRYCG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 3 cut(s) 276, 635, 786
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 3 cut(s) 276, 635, 786
BsnI GGCC 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 3 cut(s) 57, 272, 326
BspANI GGCC 1 cut(s) 874
BspHI TCATGA 2 cut(s) 79, 141
BspLI GGNNCC 3 cut(s) 264, 265, 387
BspMI ACCTGC 1 cut(s) 500
BsrI ACTGG 3 cut(s) 170, 509, 658
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 135, 217
Bst4CI ACNGT 3 cut(s) 313, 538, 578
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 324, 471, 766
BstF5I GGATG 3 cut(s) 178, 205, 225
BstHHI GCGC 2 cut(s) 475, 594
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 445
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 515, 600, 770
BstNI CCWGG 2 cut(s) 135, 217
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 133, 215, 773
BstSFI CTRYAG 2 cut(s) 432, 628
BstV1I GCAGC 1 cut(s) 773
BsuRI GGCC 1 cut(s) 874
BtsCI GGATG 3 cut(s) 178, 205, 225
BtsI GCAGTG 2 cut(s) 212, 768
BtsIMutI CAGTG 5 cut(s) 108, 163, 212, 651, 768
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 3 cut(s) 324, 471, 766
CciI TCATGA 2 cut(s) 79, 141
CfoI GCGC 2 cut(s) 475, 594
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 254
CviJI RGCY 8 cut(s) 93, 332, 453, 524, 544, 635, 764, 874
CviKI_1 RGCY 8 cut(s) 93, 332, 453, 524, 544, 635, 764, 874
CviQI GTAC 1 cut(s) 254
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
EciI GGCGGA 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 263
Eco72I CACGTG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 133, 215
EcoT38I GRGCYC 1 cut(s) 95
FaqI GGGAC 3 cut(s) 276, 635, 786
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 762
FokI GGATG 3 cut(s) 185, 212, 232
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 762
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 474, 593
GluI GCNGC 1 cut(s) 762
HaeIII GGCC 1 cut(s) 874
HapII CCGG 1 cut(s) 775
HhaI GCGC 2 cut(s) 475, 594
Hin6I GCGC 2 cut(s) 473, 592
HinP1I GCGC 2 cut(s) 473, 592
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 6 cut(s) 125, 138, 154, 160, 212, 404
HpaII CCGG 1 cut(s) 775
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 5 cut(s) 153, 159, 305, 450, 556
Hpy188III TCNNGA 2 cut(s) 80, 142
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 56, 862
HpyCH4III ACNGT 3 cut(s) 313, 538, 578
HpyCH4IV ACGT 1 cut(s) 797
HpyCH4V TGCA 7 cut(s) 4, 244, 322, 608, 651, 761, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 600, 770
HpySE526I ACGT 1 cut(s) 797
HspAI GCGC 2 cut(s) 473, 592
KflI GGGWCCC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 445
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 3 cut(s) 18, 231, 456
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 797
MaeIII GTNAC 3 cut(s) 161, 532, 791
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 373, 557
MlyI GAGTC 2 cut(s) 163, 169
MseI TTAA 4 cut(s) 14, 225, 308, 783
MslI CAYNNNNRTG 3 cut(s) 283, 676, 832
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 3 cut(s) 135, 217, 775
MvaI CCWGG 2 cut(s) 135, 217
MwoI GCNNNNNNNGC 3 cut(s) 515, 600, 770
NciI CCSGG 1 cut(s) 775
NdeI CATATG 1 cut(s) 663
NdeII GATC 1 cut(s) 445
NlaIV GGNNCC 3 cut(s) 264, 265, 387
NmuCI GTSAC 3 cut(s) 161, 532, 791
PagI TCATGA 2 cut(s) 79, 141
PfeI GAWTC 4 cut(s) 125, 138, 212, 404
PfoI TCCNGGA 2 cut(s) 133, 215
PkrI GCNGC 1 cut(s) 763
PleI GAGTC 2 cut(s) 162, 168
PmaCI CACGTG 1 cut(s) 798
PmlI CACGTG 1 cut(s) 798
PpsI GAGTC 2 cut(s) 162, 168
Ppu21I YACGTR 1 cut(s) 798
PpuMI RGGWCCY 1 cut(s) 263
PshAI GACNNNNGTC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 783
PsiI TTATAA 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 133, 215
PspCI CACGTG 1 cut(s) 798
PspGI CCWGG 2 cut(s) 133, 215
PspN4I GGNNCC 3 cut(s) 264, 265, 387
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 3 cut(s) 283, 676, 832
SaqAI TTAA 4 cut(s) 14, 225, 308, 783
SatI GCNGC 1 cut(s) 762
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 163, 169
ScrFI CCNGG 3 cut(s) 135, 217, 775
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 358, 431, 514, 647, 709, 766, 800
SfaNI GCATC 3 cut(s) 18, 231, 456
SfcI CTRYAG 2 cut(s) 432, 628
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 3 cut(s) 283, 676, 832
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 2 cut(s) 373, 557
SsiI CCGC 3 cut(s) 57, 272, 326
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 133, 215, 773
TaaI ACNGT 3 cut(s) 313, 538, 578
TaiI ACGT 1 cut(s) 800
TaqI TCGA 2 cut(s) 50, 191
TaqII GACCGA 1 cut(s) 36
TasI AATT 2 cut(s) 373, 557
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 4 cut(s) 125, 138, 212, 404
Tru1I TTAA 4 cut(s) 14, 225, 308, 783
Tru9I TTAA 4 cut(s) 14, 225, 308, 783
TscAI CASTG 5 cut(s) 108, 170, 212, 658, 775
TseFI GTSAC 3 cut(s) 161, 532, 791
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 3 cut(s) 161, 532, 791
TspDTI ATGAA 7 cut(s) 68, 96, 130, 192, 472, 746, 861
TspGWI ACGGA 2 cut(s) 473, 779
TspRI CASTG 5 cut(s) 108, 170, 212, 658, 775
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 783
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.