RchiOBHm_Chr3g0448031

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017317
Physical Location & Seq
Reverse (-)
450414 .. 451727
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41548

Sequence Viewer

Length: 780 bp
ATGAGTAGTCCGAGTCCCTGGCAGGATGATGAAATGGAAAGTTCGAGCATGGATGAGCAGTGTGATTCCAGGATGTTTAACTGGTGTGAAGTGACGCAAACAGAAGTACATGAGGGACCCTATCCGCCAATATCACAATGCTACGACTTGCTCATCAGATTAACAGTCATCATGCAAGCGGGGGCTTTTATGATAGACACCAATCCACCTCATTCTTTTCTTCATAATTTTCTGAAGGAACCAGGTATATTAGGGGAATCAAAGATTTGGGTCAACTTCACCTCTATAGACAAACAACATCAGAGCCTGAAGGACTTGATGTTTTCGCTTTGTTTCATGGGCGTTGAGCAAAAAGACTGCCGAGATATTGCTGTAGAAATATTAAATAAAGTTCAACCGGCCATCCCACTTCCCCAGTTGGCTATTGATGTGACCGTAAGGCTCATGTGTTCTGAATTGTATGGAAGATTTGACGGTTTTGATGATATGCGCTTGTATCGCTATGCAAAGAAATCATGGGACGACTATAGGGCTGCTACTACCTCCTGCACTGGTTCTCATATGCCTCCATCATCATGTGCTGTTTGTTTGGAGGATTTTGGAGGTGGAGTTGATGCTAAAATGATTGCTCGTTTGCCTTGCTTACATTATTTTCATGCAGCTTGCACTGCCCAGTGGGTTAATATCCGTCGCACGTGCCCCGTGTGCCGAACCCAAATGATGCCACTTGTATGTGATGGAAATGAACCCTTCAATCCTAACCCCATCTGGCCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

259

Amino Acids

29.45

Weight (kDa)

5.01

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 192 - 237 8.9e-12 Ring finger domain
zf-C3HC4_2 PF13923 193 - 236 4.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 193 - 236 8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 193 - 222 8.3e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 179
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 254, 329
AcvI CACGTG 1 cut(s) 696
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 395, 754
AjnI CCWGG 3 cut(s) 17, 68, 241
AluBI AGCT 1 cut(s) 662
AluI AGCT 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 2 cut(s) 399, 770
ApeKI GCWGC 2 cut(s) 533, 659
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 701
BbrPI CACGTG 1 cut(s) 696
BbvI GCAGC 2 cut(s) 520, 671
BccI CCATC 4 cut(s) 410, 577, 731, 773
BciT130I CCWGG 3 cut(s) 19, 70, 243
BfmI CTRYAG 3 cut(s) 285, 372, 526
BisI GCNGC 2 cut(s) 534, 660
BlsI GCNGC 2 cut(s) 535, 661
Bme1390I CCNGG 3 cut(s) 19, 70, 243
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 117, 118, 240
BmrFI CCNGG 3 cut(s) 19, 70, 243
BmrI ACTGGG 2 cut(s) 409, 667
BmsI GCATC 2 cut(s) 604, 711
BmuI ACTGGG 2 cut(s) 409, 667
BsaAI YACGTR 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 4 cut(s) 86, 415, 556, 673
BseBI CCWGG 3 cut(s) 19, 70, 243
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 4 cut(s) 31, 58, 78, 402
BseNI ACTGG 4 cut(s) 86, 415, 556, 673
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 2 cut(s) 520, 671
BsgI GTGCAG 1 cut(s) 532
BshFI GGCC 2 cut(s) 401, 772
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 2 cut(s) 129, 533
BsmFI GGGAC 2 cut(s) 129, 533
BsnI GGCC 2 cut(s) 401, 772
Bsp1286I GDGCHC 1 cut(s) 701
BspACI CCGC 2 cut(s) 125, 179
BspANI GGCC 2 cut(s) 401, 772
BspLI GGNNCC 3 cut(s) 117, 118, 240
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 4 cut(s) 86, 415, 556, 673
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 19, 70, 243
Bst4CI ACNGT 3 cut(s) 166, 436, 476
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 2 cut(s) 177, 664
BstF5I GGATG 4 cut(s) 31, 58, 78, 402
BstHHI GCGC 1 cut(s) 492
BstMWI GCNNNNNNNGC 3 cut(s) 498, 668, 705
BstNI CCWGG 3 cut(s) 19, 70, 243
BstSCI CCNGG 3 cut(s) 17, 68, 241
BstSFI CTRYAG 3 cut(s) 285, 372, 526
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 520, 671
BsuRI GGCC 2 cut(s) 401, 772
BtsCI GGATG 4 cut(s) 31, 58, 78, 402
BtsI GCAGTG 2 cut(s) 65, 666
BtsIMutI CAGTG 4 cut(s) 65, 549, 666, 680
Cac8I GCNNGC 2 cut(s) 177, 664
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 107
CviAII CATG 8 cut(s) 49, 110, 172, 337, 445, 516, 576, 656
CviJI RGCY 8 cut(s) 185, 306, 401, 422, 442, 533, 662, 772
CviKI_1 RGCY 8 cut(s) 185, 306, 401, 422, 442, 533, 662, 772
CviQI GTAC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 254, 329
Eco72I CACGTG 1 cut(s) 696
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 17, 68, 241
FaeI CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
FaqI GGGAC 2 cut(s) 129, 533
FatI CATG 8 cut(s) 48, 109, 171, 336, 444, 515, 575, 655
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 534, 660
FokI GGATG 4 cut(s) 38, 65, 85, 389
Fsp4HI GCNGC 2 cut(s) 534, 660
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 534, 660
HaeIII GGCC 2 cut(s) 401, 772
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 492
Hin1II CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 13, 65, 257
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 12, 158, 234, 303, 454
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 3 cut(s) 229, 304, 760
HpyCH4III ACNGT 3 cut(s) 166, 436, 476
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 5 cut(s) 175, 506, 549, 659, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 668, 705
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
HspAI GCGC 1 cut(s) 490
KflI GGGWCCC 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 520, 671
LweI GCATC 2 cut(s) 604, 711
MabI ACCWGGT 1 cut(s) 241
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 2 cut(s) 91, 430
MboII GAAGA 2 cut(s) 212, 477
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 2 cut(s) 226, 455
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 106, 219, 292, 553, 576, 586, 596
MseI TTAA 4 cut(s) 78, 161, 383, 681
MslI CAYNNNNRTG 2 cut(s) 574, 730
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 19, 70, 243
MvaI CCWGG 3 cut(s) 19, 70, 243
MwoI GCNNNNNNNGC 3 cut(s) 498, 668, 705
NdeI CATATG 1 cut(s) 561
NlaIII CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
NlaIV GGNNCC 3 cut(s) 117, 118, 240
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 2 cut(s) 91, 430
PfeI GAWTC 2 cut(s) 65, 257
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 2 cut(s) 535, 661
PleI GAGTC 1 cut(s) 21
PmaCI CACGTG 1 cut(s) 696
PmlI CACGTG 1 cut(s) 696
PpsI GAGTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 696
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 17, 68, 241
PspCI CACGTG 1 cut(s) 696
PspGI CCWGG 3 cut(s) 17, 68, 241
PspN4I GGNNCC 3 cut(s) 117, 118, 240
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 574, 730
SaqAI TTAA 4 cut(s) 78, 161, 383, 681
SatI GCNGC 2 cut(s) 534, 660
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 3 cut(s) 19, 70, 243
SduI GDGCHC 1 cut(s) 701
SetI ASST 7 cut(s) 211, 247, 284, 545, 607, 664, 698
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 2 cut(s) 604, 711
SfcI CTRYAG 3 cut(s) 285, 372, 526
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 574, 730
Sse9I AATT 2 cut(s) 226, 455
SsiI CCGC 2 cut(s) 125, 179
SspI AATATT 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 17, 68, 241
TaaI ACNGT 3 cut(s) 166, 436, 476
TaiI ACGT 1 cut(s) 698
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 226, 455
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 65, 257
Tru1I TTAA 4 cut(s) 78, 161, 383, 681
Tru9I TTAA 4 cut(s) 78, 161, 383, 681
TscAI CASTG 4 cut(s) 65, 556, 673, 680
TseFI GTSAC 2 cut(s) 91, 430
TseI GCWGC 2 cut(s) 533, 659
Tsp45I GTSAC 2 cut(s) 91, 430
TspDTI ATGAA 5 cut(s) 45, 212, 325, 644, 759
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 4 cut(s) 65, 556, 673, 680
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.