RchiOBHm_Chr3g0447991

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017317
Physical Location & Seq
Reverse (-)
431078 .. 435205
4128 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41544

Sequence Viewer

Length: 786 bp
ATGTGTTCTCCTCCTGCATTCATGAGTAGTCCGAGTCCCTGGCAGGATGATGAAATGGAAAGTTCGAGCATGGATGAGCAGTGTGATTCCAGGATGTTTAACTGGTGTGAAGTGATGCAAACAGAAGTACATGAGGGACCCTATCCGCCAATATCACAATGCTACGACTTGCTCATCAGATTAACAGTCATCATGCAAGCGGGGGCTTTTATGATAGACACCAATCCACCACATTCTTTTATTTATAATTTTGATCAGGAACCATGTATATTAGGGGAAACAAAGATTTGGGTCAACTTCACCTCTATAGAGAAACAACATCAGAGCCTGAAGGACTTGATGTTTGCGCTTTGTTTCATGGGCGTTGAGCAAAAAGACTGCGGAGATATTGCTGTAGAAATATTAAACAAAGTTCAACCGGCCATCCCCCTTCCCCAGTTGGCTATTGATGTGACCGTAAGGCTCACGTATTCTGAATTGTATGGAAGATTTGACGGTTATGATGATATGCGCTTGCATAGCTATGTAAAGAAATCATGGGACGACTTTAGGGCTGCTGCTACTACCTCCTGCACTGGTTCATGTGCTGTTTGTTTGGAGGATTTTGGAGGCGGAGTTGATGCTAAAATGATTGCTCGTTTGCCCTGCTTACATTATTTTCATGCAGCTTGCACTGCCCAGTGGGTTAATATCCGTCGCACGTGTCCCGTGTGCCGAACCCAAATGATGCCACTTGTATGTGATGGAAATGAACCCTTCAATCCTAACCCCATCTGGCCCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

261

Amino Acids

29.6

Weight (kDa)

4.65

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 194 - 239 6.7e-12 Ring finger domain
zf-C3HC4_2 PF13923 195 - 238 4.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 195 - 238 8.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 195 - 224 8.4e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AciI CCGC 4 cut(s) 146, 200, 381, 612
AcoI YGGCCR 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 350
AcvI CACGTG 1 cut(s) 702
AfaI GTAC 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 701
AgsI TTSAA 2 cut(s) 416, 760
AjnI CCWGG 2 cut(s) 38, 89
AluBI AGCT 2 cut(s) 522, 668
AluI AGCT 2 cut(s) 522, 668
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 2 cut(s) 420, 776
ApeKI GCWGC 3 cut(s) 554, 557, 665
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 349, 513
AspS9I GGNCC 2 cut(s) 137, 777
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 702
BbvI GCAGC 3 cut(s) 541, 544, 677
BccI CCATC 3 cut(s) 431, 737, 779
BciT130I CCWGG 2 cut(s) 40, 91
BclI TGATCA 1 cut(s) 253
BfmI CTRYAG 2 cut(s) 306, 393
BisI GCNGC 3 cut(s) 555, 558, 666
BlsI GCNGC 3 cut(s) 556, 559, 667
Bme1390I CCNGG 2 cut(s) 40, 91
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 777
BmiI GGNNCC 3 cut(s) 138, 139, 261
BmrFI CCNGG 2 cut(s) 40, 91
BmrI ACTGGG 2 cut(s) 430, 673
BmsI GCATC 3 cut(s) 105, 610, 717
BmuI ACTGGG 2 cut(s) 430, 673
BsaAI YACGTR 2 cut(s) 468, 702
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 4 cut(s) 107, 436, 580, 679
BseBI CCWGG 2 cut(s) 40, 91
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 4 cut(s) 52, 79, 99, 423
BseNI ACTGG 4 cut(s) 107, 436, 580, 679
BseXI GCAGC 3 cut(s) 541, 544, 677
BsgI GTGCAG 1 cut(s) 556
BshFI GGCC 2 cut(s) 422, 778
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 4 cut(s) 21, 150, 554, 690
BsmFI GGGAC 4 cut(s) 21, 150, 554, 690
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 422, 778
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 4 cut(s) 146, 200, 381, 612
BspANI GGCC 2 cut(s) 422, 778
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 138, 139, 261
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 4 cut(s) 107, 436, 580, 679
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 2 cut(s) 40, 91
Bst4CI ACNGT 3 cut(s) 187, 457, 497
BstBAI YACGTR 2 cut(s) 468, 702
BstC8I GCNNGC 3 cut(s) 198, 515, 670
BstF5I GGATG 4 cut(s) 52, 79, 99, 423
BstHHI GCGC 2 cut(s) 349, 513
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 519, 674
BstNI CCWGG 2 cut(s) 40, 91
BstSCI CCNGG 2 cut(s) 38, 89
BstSFI CTRYAG 2 cut(s) 306, 393
BstV1I GCAGC 3 cut(s) 541, 544, 677
BsuRI GGCC 2 cut(s) 422, 778
BtsCI GGATG 4 cut(s) 52, 79, 99, 423
BtsI GCAGTG 2 cut(s) 86, 672
BtsIMutI CAGTG 4 cut(s) 86, 573, 672, 686
Cac8I GCNNGC 3 cut(s) 198, 515, 670
CaiI CAGNNNCTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 21
CfoI GCGC 2 cut(s) 349, 513
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 137, 777
Csp6I GTAC 1 cut(s) 128
CviAII CATG 9 cut(s) 22, 70, 131, 193, 264, 358, 537, 582, 662
CviJI RGCY 9 cut(s) 206, 327, 422, 443, 463, 522, 554, 668, 778
CviKI_1 RGCY 9 cut(s) 206, 327, 422, 443, 463, 522, 554, 668, 778
CviQI GTAC 1 cut(s) 128
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 420
EciI GGCGGA 2 cut(s) 135, 627
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 350
Eco72I CACGTG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 38, 89
FaeI CATG 9 cut(s) 25, 73, 134, 196, 267, 361, 540, 585, 665
FaqI GGGAC 4 cut(s) 21, 150, 554, 690
FatI CATG 9 cut(s) 21, 69, 130, 192, 263, 357, 536, 581, 661
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 555, 558, 666
FokI GGATG 4 cut(s) 59, 86, 106, 410
Fsp4HI GCNGC 3 cut(s) 555, 558, 666
GlaI GCGC 2 cut(s) 348, 512
GluI GCNGC 3 cut(s) 555, 558, 666
HaeIII GGCC 2 cut(s) 422, 778
HapII CCGG 1 cut(s) 419
HhaI GCGC 2 cut(s) 349, 513
Hin1II CATG 9 cut(s) 25, 73, 134, 196, 267, 361, 540, 585, 665
Hin6I GCGC 2 cut(s) 347, 511
HinP1I GCGC 2 cut(s) 347, 511
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 34, 86
HpaII CCGG 1 cut(s) 419
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 4 cut(s) 33, 179, 324, 475
Hpy188III TCNNGA 2 cut(s) 22, 257
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 699
HpyAV CCTTC 3 cut(s) 325, 440, 766
HpyCH4III ACNGT 3 cut(s) 187, 457, 497
HpyCH4IV ACGT 2 cut(s) 467, 701
HpyCH4V TGCA 7 cut(s) 17, 118, 196, 517, 573, 665, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 674
HpySE526I ACGT 2 cut(s) 467, 701
Hsp92II CATG 9 cut(s) 25, 73, 134, 196, 267, 361, 540, 585, 665
HspAI GCGC 2 cut(s) 347, 511
KflI GGGWCCC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 541, 544, 677
LweI GCATC 3 cut(s) 105, 610, 717
MaeII ACGT 2 cut(s) 467, 701
MaeIII GTNAC 1 cut(s) 451
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 498
MluCI AATT 2 cut(s) 247, 476
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 6 cut(s) 21, 127, 313, 577, 592, 602
MseI TTAA 4 cut(s) 99, 182, 404, 687
MslI CAYNNNNRTG 2 cut(s) 522, 736
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 40, 91
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 2 cut(s) 40, 91
MwoI GCNNNNNNNGC 2 cut(s) 519, 674
NdeII GATC 1 cut(s) 253
NlaIII CATG 9 cut(s) 25, 73, 134, 196, 267, 361, 540, 585, 665
NlaIV GGNNCC 3 cut(s) 138, 139, 261
NmuCI GTSAC 1 cut(s) 451
PagI TCATGA 1 cut(s) 21
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 556, 559, 667
PleI GAGTC 1 cut(s) 42
PmaCI CACGTG 1 cut(s) 702
PmlI CACGTG 1 cut(s) 702
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 2 cut(s) 468, 702
PpuMI RGGWCCY 1 cut(s) 137
PsiI TTATAA 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 38, 89
PspCI CACGTG 1 cut(s) 702
PspGI CCWGG 2 cut(s) 38, 89
PspN4I GGNNCC 3 cut(s) 138, 139, 261
PspPI GGNCC 2 cut(s) 137, 777
PspPPI RGGWCCY 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 328
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 522, 736
SaqAI TTAA 4 cut(s) 99, 182, 404, 687
SatI GCNGC 3 cut(s) 555, 558, 666
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 137, 777
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 40, 91
SetI ASST 6 cut(s) 305, 470, 524, 569, 670, 704
SfaNI GCATC 3 cut(s) 105, 610, 717
SfcI CTRYAG 2 cut(s) 306, 393
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 522, 736
Sse9I AATT 2 cut(s) 247, 476
SsiI CCGC 4 cut(s) 146, 200, 381, 612
SspI AATATT 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 38, 89
TaaI ACNGT 3 cut(s) 187, 457, 497
TaiI ACGT 2 cut(s) 470, 704
TaqI TCGA 1 cut(s) 65
TasI AATT 2 cut(s) 247, 476
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 4 cut(s) 99, 182, 404, 687
Tru9I TTAA 4 cut(s) 99, 182, 404, 687
TscAI CASTG 4 cut(s) 86, 580, 679, 686
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 554, 557, 665
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 6 cut(s) 10, 66, 346, 570, 650, 765
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 4 cut(s) 86, 580, 679, 686
VpaK11BI GGWCC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.