RLG00000025954

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017317
Physical Location & Seq
Forward (+)
49466608 .. 49474298
7691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025954

Sequence Viewer

Length: 615 bp
ATGAGTAGTCCGAGTCCGAGTCCGAGTCCCTGGCAGGATGATGAAATGGAAAGTTCGAGCATGGATGAGCAGTGTGATTCCAGGATGTTTAAGTGGTGTGAAGTGATGCAAACGGAAGTACATGAGGGACCCTATCCGCCAACATCACAATGCTACGACTTGCTCATCCGATTAACAGTCATCATGCAAGCGGGGGCTTTTACGATAGACACCAATCCACCACATTCTTTTATTTATAATTTTGATCAGGAACCATGTATGTTAGGGGAAACAAAGATTTGGGTCAACTTCACCTCTATAGACAAACAATATCAGAGCCTGAAGGACTTGATGTTTGCGCTTTGTTTCATGGGCGTTGAGCAAAAAGACTGCCGAGGTATTGCTGTAGAAATATTAAACAAAGTTCAACCGGCCATCCCCCTTCCCCAGTTGGCTATTGATGTGACCGTAAGGCTCACGTGTTCTGAATTGTATGGAAGATTTGACGGTTATGATGATATGCGCTTGTATCGCTATGCAAAGAAATCATGGGACGACTTTAGGGCTCCTACTACCTCCTGCACTGTTATTAAATATTTTTTGATATTCATGTGTAAGACTGGTATTGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.56

Weight (kDa)

4.62

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AciI CCGC 2 cut(s) 137, 191
AcoI YGGCCR 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 341
AcvI CACGTG 1 cut(s) 459
AfaI GTAC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 2 cut(s) 29, 80
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 1 cut(s) 411
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 2 cut(s) 340, 504
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 547
BbrPI CACGTG 1 cut(s) 459
BccI CCATC 1 cut(s) 422
BciT130I CCWGG 2 cut(s) 31, 82
BclI TGATCA 1 cut(s) 244
BfmI CTRYAG 2 cut(s) 297, 384
Bme1390I CCNGG 2 cut(s) 31, 82
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 4 cut(s) 129, 130, 252, 546
BmrFI CCNGG 2 cut(s) 31, 82
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 29, 373
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 427, 604
BseBI CCWGG 2 cut(s) 31, 82
BseDI CCNNGG 2 cut(s) 29, 373
BseGI GGATG 5 cut(s) 43, 70, 90, 165, 414
BseNI ACTGG 2 cut(s) 427, 604
BsgI GTGCAG 1 cut(s) 544
BshFI GGCC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 3 cut(s) 12, 141, 545
BsmFI GGGAC 3 cut(s) 12, 141, 545
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 2 cut(s) 137, 191
BspANI GGCC 1 cut(s) 413
BspLI GGNNCC 4 cut(s) 129, 130, 252, 546
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 2 cut(s) 427, 604
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 29, 373
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 31, 82
Bst4CI ACNGT 4 cut(s) 178, 448, 488, 565
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 5 cut(s) 43, 70, 90, 165, 414
BstHHI GCGC 2 cut(s) 340, 504
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 2 cut(s) 31, 82
BstSCI CCNGG 2 cut(s) 29, 80
BstSFI CTRYAG 2 cut(s) 297, 384
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 5 cut(s) 43, 70, 90, 165, 414
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 77, 561
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 2 cut(s) 340, 504
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 119
CviAII CATG 7 cut(s) 61, 122, 184, 255, 349, 528, 589
CviJI RGCY 6 cut(s) 197, 318, 413, 434, 454, 545
CviKI_1 RGCY 6 cut(s) 197, 318, 413, 434, 454, 545
CviQI GTAC 1 cut(s) 119
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 411
EciI GGCGGA 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 341
Eco72I CACGTG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 29, 80
EcoT38I GRGCYC 1 cut(s) 547
FaeI CATG 7 cut(s) 64, 125, 187, 258, 352, 531, 592
FaqI GGGAC 3 cut(s) 12, 141, 545
FatI CATG 7 cut(s) 60, 121, 183, 254, 348, 527, 588
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 244
FokI GGATG 5 cut(s) 50, 77, 97, 152, 401
FriOI GRGCYC 1 cut(s) 547
GlaI GCGC 2 cut(s) 339, 503
HaeIII GGCC 1 cut(s) 413
HapII CCGG 1 cut(s) 410
HhaI GCGC 2 cut(s) 340, 504
Hin1II CATG 7 cut(s) 64, 125, 187, 258, 352, 531, 592
Hin6I GCGC 2 cut(s) 338, 502
HinP1I GCGC 2 cut(s) 338, 502
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 4 cut(s) 13, 19, 25, 77
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 12, 18, 24, 170, 315, 466
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 316, 431
HpyCH4III ACNGT 4 cut(s) 178, 448, 488, 565
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 109, 187, 518, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 7 cut(s) 64, 125, 187, 258, 352, 531, 592
HspAI GCGC 2 cut(s) 338, 502
KflI GGGWCCC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 550
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 2 cut(s) 238, 467
MlyI GAGTC 3 cut(s) 22, 28, 34
MnlI CCTC 4 cut(s) 118, 304, 368, 565
MseI TTAA 4 cut(s) 90, 173, 395, 570
MslI CAYNNNNRTG 1 cut(s) 148
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 31, 82
MvaI CCWGG 2 cut(s) 31, 82
MwoI GCNNNNNNNGC 1 cut(s) 510
NdeII GATC 1 cut(s) 244
NlaIII CATG 7 cut(s) 64, 125, 187, 258, 352, 531, 592
NlaIV GGNNCC 4 cut(s) 129, 130, 252, 546
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 80
PleI GAGTC 3 cut(s) 21, 27, 33
PmaCI CACGTG 1 cut(s) 459
PmlI CACGTG 1 cut(s) 459
PpsI GAGTC 3 cut(s) 21, 27, 33
Ppu21I YACGTR 1 cut(s) 459
PpuMI RGGWCCY 1 cut(s) 128
PsiI TTATAA 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 29, 80
PspCI CACGTG 1 cut(s) 459
PspGI CCWGG 2 cut(s) 29, 80
PspN4I GGNNCC 4 cut(s) 129, 130, 252, 546
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 4 cut(s) 90, 173, 395, 570
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 3 cut(s) 22, 28, 34
ScrFI CCNGG 2 cut(s) 31, 82
SduI GDGCHC 1 cut(s) 547
SetI ASST 4 cut(s) 296, 379, 461, 557
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 297, 384
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 2 cut(s) 238, 467
SsiI CCGC 2 cut(s) 137, 191
SspI AATATT 2 cut(s) 393, 575
StyD4I CCNGG 2 cut(s) 29, 80
TaaI ACNGT 4 cut(s) 178, 448, 488, 565
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 56
TasI AATT 2 cut(s) 238, 467
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 4 cut(s) 90, 173, 395, 570
Tru9I TTAA 4 cut(s) 90, 173, 395, 570
TscAI CASTG 2 cut(s) 77, 568
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 57, 337, 577
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 77, 568
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.