FvH4_6g07171

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016061
Physical Location & Seq
Forward (+)
4322997 .. 4324328
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07171.t1

Sequence Viewer

Length: 690 bp
ATGGTGGAGGACATCCGGTACCGCTCCTACTCTGGAGCTGGCCGGAACCTTGAGATGTTGAACGTTAGGAGTTTAAGCGAAAACTACAACACAATGTACTCAGACAGGTACACTCCATCTCAATGTTTGTCATGGGTTCCTCCTTCTGCTACTCCTCCTCCCTTCCTTGTAGAAAGGATTAGACAACAACAACATGATCACCGCCAGTTCGGGAAGGCAGAGCAGAAGAGAGGGCTGGCGGAGGTGCCTAGGTCGAAGAATAAGAGGTTTAAATTATGGTGGAATGATGCAGAGGTTAAGAGAAGAAGAAGGGTTGCTAAATATAAGTTGTATGGTGCCGAAGGGAAGATGAAGATGTCGTTCAAGAGAGGGCTCTCCCGAATCAGGATAAAATTGTGGTCTATGGTTATGGTTAGAGCACCATCAGGGACGGCCCTTGTGCTGTGCAACATGTGTAGCCGCACAAGGCCTCCTAATCTACATCTGAGCACAATCTTTATATGCTGCTATGCTCTCTGCCTTCGTTTGTGGCTATCACGAAAGTCTTTTAGTTTTGTATTTCTTTACTTTCCTGCGTTCGAGCTCAGTGTTCTCTCTCTATCTCTCATTTTCTCTCCTCGACTTCCCCGGGTCGCCTTCGAAGCCGATCTCGAAGTTCAGACTCTTCACCGTCAAGAAGAAACGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

230

Amino Acids

26.88

Weight (kDa)

10.23

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 94 - 135 3.1e-14 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 18
AccB1I GGYRCC 3 cut(s) 18, 244, 335
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 4 cut(s) 22, 202, 239, 460
AclI AACGTT 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 40
AfaI GTAC 3 cut(s) 20, 98, 110
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 2 cut(s) 61, 364
AluBI AGCT 2 cut(s) 38, 583
AluI AGCT 2 cut(s) 38, 583
Alw21I GWGCWC 3 cut(s) 421, 491, 585
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 3 cut(s) 40, 432, 467
ApeKI GCWGC 1 cut(s) 504
Asp718I GGTACC 1 cut(s) 18
AspA2I CCTAGG 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 2 cut(s) 628, 629
AsuHPI GGTGA 2 cut(s) 191, 659
AsuII TTCGAA 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 627
AvrII CCTAGG 1 cut(s) 248
BanI GGYRCC 3 cut(s) 18, 244, 335
BanII GRGCYC 2 cut(s) 375, 585
Bbv12I GWGCWC 3 cut(s) 421, 491, 585
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 124, 430
BceAI ACGGC 1 cut(s) 447
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 2 cut(s) 628, 629
BfaI CTAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 460, 505
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 2 cut(s) 461, 506
Bme1390I CCNGG 2 cut(s) 628, 629
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 5 cut(s) 20, 47, 138, 246, 337
BmrFI CCNGG 2 cut(s) 628, 629
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 628, 629
BsaJI CCNNGG 3 cut(s) 248, 626, 627
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 3 cut(s) 248, 626, 627
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 114, 476, 598
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 144, 147, 606
BseXI GCAGC 1 cut(s) 491
BshFI GGCC 3 cut(s) 42, 434, 469
BshNI GGYRCC 3 cut(s) 18, 244, 335
BsiHKAI GWGCWC 3 cut(s) 421, 491, 585
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 3 cut(s) 16, 43, 628
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 3 cut(s) 42, 434, 469
BsoBI CYCGRG 1 cut(s) 627
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 4 cut(s) 375, 421, 491, 585
Bsp143I GATC 2 cut(s) 196, 646
BspACI CCGC 4 cut(s) 22, 202, 239, 460
BspANI GGCC 3 cut(s) 42, 434, 469
BspCNI CTCAG 3 cut(s) 113, 477, 597
BspLI GGNNCC 5 cut(s) 20, 47, 138, 246, 337
BspT104I TTCGAA 1 cut(s) 639
BspT107I GGYRCC 3 cut(s) 18, 244, 335
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 3 cut(s) 248, 626, 627
BssMI GATC 2 cut(s) 196, 646
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 221, 669
BstBI TTCGAA 1 cut(s) 639
BstC8I GCNNGC 2 cut(s) 40, 237
BstDEI CTNAG 3 cut(s) 100, 485, 584
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 2 cut(s) 199, 649
BstMBI GATC 2 cut(s) 196, 646
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 626, 627
BstV1I GCAGC 1 cut(s) 491
BsuRI GGCC 3 cut(s) 42, 434, 469
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 2 cut(s) 40, 237
Cfr13I GGNCC 1 cut(s) 433
Cfr9I CCCGGG 1 cut(s) 627
Csp6I GTAC 3 cut(s) 19, 97, 109
CviAII CATG 4 cut(s) 132, 194, 451, 687
CviQI GTAC 3 cut(s) 19, 97, 109
DdeI CTNAG 3 cut(s) 100, 485, 584
DpnI GATC 2 cut(s) 198, 648
DpnII GATC 2 cut(s) 196, 646
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 221, 669
EarI CTCTTC 2 cut(s) 221, 669
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 375, 585
Eco53kI GAGCTC 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 627
EcoICRI GAGCTC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 2 cut(s) 375, 585
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 4 cut(s) 135, 197, 454, 690
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 131, 193, 450, 686
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 460, 505
FriOI GRGCYC 2 cut(s) 375, 585
Fsp4HI GCNGC 2 cut(s) 460, 505
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 460, 505
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 3 cut(s) 42, 434, 469
HapII CCGG 3 cut(s) 16, 43, 628
Hin1II CATG 4 cut(s) 135, 197, 454, 690
HinfI GANTC 2 cut(s) 381, 661
HpaII CCGG 3 cut(s) 16, 43, 628
HphI GGTGA 2 cut(s) 191, 659
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 3 cut(s) 103, 486, 660
Hpy188III TCNNGA 8 cut(s) 33, 211, 364, 378, 385, 537, 650, 674
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 7 cut(s) 153, 172, 208, 303, 335, 530, 646
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 290, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 3 cut(s) 100, 485, 584
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 135, 197, 454, 690
KpnI GGTACC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 646
LmnI GCTCC 2 cut(s) 29, 35
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 63
MalI GATC 2 cut(s) 198, 648
MbiI CCGCTC 1 cut(s) 24
MboI GATC 2 cut(s) 196, 646
MboII GAAGA 8 cut(s) 238, 268, 315, 318, 358, 364, 656, 689
MhlI GDGCHC 4 cut(s) 375, 421, 491, 585
MluCI AATT 2 cut(s) 272, 392
MlyI GAGTC 1 cut(s) 655
MseI TTAA 3 cut(s) 74, 270, 297
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 3 cut(s) 16, 43, 628
MspR9I CCNGG 2 cut(s) 628, 629
MwoI GCNNNNNNNGC 1 cut(s) 641
NciI CCSGG 2 cut(s) 628, 629
NdeII GATC 2 cut(s) 196, 646
NlaIII CATG 4 cut(s) 135, 197, 454, 690
NlaIV GGNNCC 5 cut(s) 20, 47, 138, 246, 337
NspI RCATGY 1 cut(s) 454
NspV TTCGAA 1 cut(s) 639
PceI AGGCCT 1 cut(s) 469
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 2 cut(s) 461, 506
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PscI ACATGT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 20, 47, 138, 246, 337
PspPI GGNCC 1 cut(s) 433
RsaI GTAC 3 cut(s) 20, 98, 110
RsaNI GTAC 3 cut(s) 19, 97, 109
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 3 cut(s) 74, 270, 297
SatI GCNGC 2 cut(s) 460, 505
Sau3AI GATC 2 cut(s) 196, 646
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 2 cut(s) 628, 629
SduI GDGCHC 4 cut(s) 375, 421, 491, 585
SetI ASST 9 cut(s) 40, 51, 66, 110, 246, 254, 269, 297, 585
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 639
SmaI CCCGGG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 272, 392
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 4 cut(s) 22, 202, 239, 460
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 585
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 626, 627
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 1 cut(s) 66
TaqI TCGA 5 cut(s) 254, 579, 619, 639, 651
TasI AATT 2 cut(s) 272, 392
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 3 cut(s) 74, 270, 297
Tru9I TTAA 3 cut(s) 74, 270, 297
TscAI CASTG 1 cut(s) 592
TseI GCWGC 1 cut(s) 504
TspDTI ATGAA 1 cut(s) 365
TspMI CCCGGG 1 cut(s) 627
TspRI CASTG 1 cut(s) 592
XceI RCATGY 1 cut(s) 454
XmaI CCCGGG 1 cut(s) 627
XmaJI CCTAGG 1 cut(s) 248
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.