RchiOBHm_Chr3g0456821

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016061
Physical Location & Seq
Forward (+)
6186169 .. 6186823
655 bp
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UTR
Exon/CDS
Intron
PRQ42360

Sequence Viewer

Length: 426 bp
ATGGTGGAGGAGATCCAGTACCGCTCCTATGCGGAAGCTGGCCGGAACCTAGAGATGGTGAACGTGAGGAGATTAACCGAAAACTACAGCACAATATACGTAGACAGGTACAATTCATCTCAGTACTTGTCATGGGCTCCTCCTTCTGTTAATCCTCCTCCCTTCCTTACAGAAAGGGTTAGACGACGACAACAACTACGTGATGAATGCCAGTTTGGGAAGGCAGAGCCGAATAGAGAGGTGCTGGAGGTGCCTAGGTCGAAGAATAAGCCGTTCAAATTGTGGTGGAATGATGCAGAGATTAAGAGAAGAGGAAGGGTTGCTAAATATAAGTTGTATGGTGCTGAAGGGAAGATGAAGATGTCGTTGAAGAAAGGGTACCGTTGGTTCAAGAAGAAATGCCTTGAAATTGTAAGTAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

141

Amino Acids

16.96

Weight (kDa)

9.97

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 96 - 139 5.9e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 250, 378
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 102
AciI CCGC 2 cut(s) 22, 32
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 4 cut(s) 20, 110, 125, 380
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 4 cut(s) 277, 370, 391, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 7
AoxI GGCC 1 cut(s) 40
Asp718I GGTACC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 254
BanI GGYRCC 2 cut(s) 250, 378
BanII GRGCYC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 256
BfaI CTAG 2 cut(s) 50, 255
BfmI CTRYAG 1 cut(s) 85
BlnI CCTAGG 1 cut(s) 254
BmcAI AGTACT 1 cut(s) 125
BmiI GGNNCC 4 cut(s) 47, 138, 252, 380
BmsI GCATC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 100, 200
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 16, 211
BseDI CCNNGG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 16, 211
BseRI GAGGAG 4 cut(s) 23, 82, 129, 147
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 2 cut(s) 250, 378
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 55
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 2 cut(s) 22, 32
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 47, 138, 252, 380
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 2 cut(s) 250, 378
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 2 cut(s) 16, 211
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 304
BstBAI YACGTR 2 cut(s) 100, 200
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 40
Csp6I GTAC 4 cut(s) 19, 109, 124, 379
CviAII CATG 1 cut(s) 132
CviJI RGCY 5 cut(s) 38, 42, 137, 229, 271
CviKI_1 RGCY 5 cut(s) 38, 42, 137, 229, 271
CviQI GTAC 4 cut(s) 19, 109, 124, 379
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 135
FaiI YATR 5 cut(s) 30, 97, 133, 330, 339
FatI CATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 139
FspBI CTAG 2 cut(s) 50, 255
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 43
Hin1II CATG 1 cut(s) 135
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 61, 103
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 2 cut(s) 61, 103
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 5 cut(s) 153, 172, 214, 309, 341
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 3 cut(s) 63, 99, 199
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 3 cut(s) 63, 99, 199
Hsp92II CATG 1 cut(s) 135
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 29, 142
LpnPI CCDG 6 cut(s) 24, 29, 56, 91, 224, 230
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 50, 255
MaeII ACGT 3 cut(s) 63, 99, 199
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 12
MboII GAAGA 6 cut(s) 274, 321, 364, 370, 382, 406
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 3 cut(s) 112, 278, 408
MnlI CCTC 7 cut(s) 60, 150, 165, 168, 232, 241, 305
MseI TTAA 3 cut(s) 74, 150, 303
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 4 cut(s) 47, 138, 252, 380
PctI GAATGC 1 cut(s) 212
Ppu21I YACGTR 2 cut(s) 100, 200
PspN4I GGNNCC 4 cut(s) 47, 138, 252, 380
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 4 cut(s) 20, 110, 125, 380
RsaNI GTAC 4 cut(s) 19, 109, 124, 379
SaqAI TTAA 3 cut(s) 74, 150, 303
Sau3AI GATC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 125
SduI GDGCHC 1 cut(s) 139
SetI ASST 9 cut(s) 40, 51, 66, 102, 110, 202, 243, 252, 260
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 3 cut(s) 112, 278, 408
SsiI CCGC 2 cut(s) 22, 32
SspMI CTAG 2 cut(s) 50, 255
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 3 cut(s) 66, 102, 202
TaqI TCGA 1 cut(s) 260
TasI AATT 3 cut(s) 112, 278, 408
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 3 cut(s) 74, 150, 303
Tru9I TTAA 3 cut(s) 74, 150, 303
TspDTI ATGAA 3 cut(s) 105, 219, 371
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 50, 255
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.