RLG00000025276

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016061
Physical Location & Seq
Reverse (-)
43540220 .. 43541206
987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025276

Sequence Viewer

Length: 537 bp
ATGGTGGAGGAGATCCAGTACCGCTCCTATGCGGGAGCTGGCCGGAACCTAGAGATGGTGAACGTGAGGAGATTAAGCGAAAACTACAGCACAATATACGTAGACAGGTACAATTCATCTCAGCACTTGTCATGGGCTCCTCCTTCTGTTAATCCTCCTCCCTTCCTTATAGAGAGGGTTAGACGACGACAACAACAACGTGATGAATGCCGGTTTGGGAAGGCAGAGCCGAATAGAGAGGTGCTGGAGGTGCCTAGGTCGAAGAATAAGCCGTTCAAATTGTGGTGGAATGATGCAGAGATTAAGAGAAGAGGAAGGGTTGCTAAATATAAGTTGTATGGTGCTGAAGGGAAGATGAAGATGTCGTTGAAGAAAGGGTACCGTTGGTTCAAGAAGAAATGCCTTGAAATTGGCCCTATTACCAACTTGAGATTTAAGGTCATGCATGGAGCATCATTTTACGAAATTGAAGATATCGACCGCGACCACACTATGCGATGTGATCCTCTGGACTCTAGTCATGCAACCAATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

179

Amino Acids

21.19

Weight (kDa)

9.77

Isoelectric Point (pI)

66.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 96 - 137 7.2e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 250, 378
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 483
AciI CCGC 3 cut(s) 22, 32, 481
AclWI GGATC 2 cut(s) 7, 497
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 3 cut(s) 20, 110, 380
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 5 cut(s) 277, 370, 391, 407, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 2 cut(s) 7, 497
AoxI GGCC 2 cut(s) 40, 412
Asp718I GGTACC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 254
BanI GGYRCC 2 cut(s) 250, 378
BanII GRGCYC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 256
BfaI CTAG 3 cut(s) 50, 255, 516
BfmI CTRYAG 1 cut(s) 85
BlnI CCTAGG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 4 cut(s) 47, 138, 252, 380
BmsI GCATC 2 cut(s) 283, 461
BoxI GACNNNNGTC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 448
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 4 cut(s) 23, 82, 129, 147
Bsh1236I CGCG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 2 cut(s) 42, 414
BshNI GGYRCC 2 cut(s) 250, 378
BsiEI CGRYCG 1 cut(s) 481
BsiSI CCGG 2 cut(s) 43, 211
BslI CCNNNNNNNGG 1 cut(s) 55
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 42, 414
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 12, 502
BspACI CCGC 3 cut(s) 22, 32, 481
BspANI GGCC 2 cut(s) 42, 414
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 4 cut(s) 47, 138, 252, 380
BspPI GGATC 2 cut(s) 7, 497
BspT107I GGYRCC 2 cut(s) 250, 378
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 12, 502
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 2 cut(s) 15, 505
BstMBI GATC 2 cut(s) 12, 502
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 100
BstUI CGCG 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 2 cut(s) 42, 414
BtgZI GCGATG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 3 cut(s) 19, 109, 379
CviAII CATG 4 cut(s) 132, 442, 446, 521
CviJI RGCY 6 cut(s) 38, 42, 137, 229, 271, 414
CviKI_1 RGCY 6 cut(s) 38, 42, 137, 229, 271, 414
CviQI GTAC 3 cut(s) 19, 109, 379
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 14, 504
DpnII GATC 2 cut(s) 12, 502
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 135, 445, 449, 524
FatI CATG 4 cut(s) 131, 441, 445, 520
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 139
FspBI CTAG 3 cut(s) 50, 255, 516
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 42, 414
HapII CCGG 2 cut(s) 43, 211
Hin1II CATG 4 cut(s) 135, 445, 449, 524
HinfI GANTC 1 cut(s) 512
HpaII CCGG 2 cut(s) 43, 211
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 61, 103
Hpy188III TCNNGA 2 cut(s) 391, 509
Hpy8I GTNNAC 2 cut(s) 61, 103
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 5 cut(s) 153, 172, 214, 309, 341
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 3 cut(s) 63, 99, 199
HpyCH4V TGCA 3 cut(s) 296, 445, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 3 cut(s) 63, 99, 199
Hsp92II CATG 4 cut(s) 135, 445, 449, 524
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 12, 502
LmnI GCTCC 4 cut(s) 29, 35, 142, 449
LpnPI CCDG 7 cut(s) 24, 29, 56, 91, 224, 230, 494
LweI GCATC 2 cut(s) 283, 461
MaeI CTAG 3 cut(s) 50, 255, 516
MaeII ACGT 3 cut(s) 63, 99, 199
MalI GATC 2 cut(s) 14, 504
MbiI CCGCTC 1 cut(s) 24
MboI GATC 2 cut(s) 12, 502
MboII GAAGA 7 cut(s) 274, 321, 364, 370, 382, 406, 482
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 5 cut(s) 112, 278, 408, 465, 529
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 9 cut(s) 60, 150, 165, 168, 168, 232, 241, 305, 516
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 4 cut(s) 74, 150, 303, 435
MspI CCGG 2 cut(s) 43, 211
Mva1269I GAATGC 1 cut(s) 212
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 2 cut(s) 12, 502
NlaIII CATG 4 cut(s) 135, 445, 449, 524
NlaIV GGNNCC 4 cut(s) 47, 138, 252, 380
NsiI ATGCAT 1 cut(s) 447
PctI GAATGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 516
PspN4I GGNNCC 4 cut(s) 47, 138, 252, 380
PspPI GGNCC 1 cut(s) 413
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 3 cut(s) 20, 110, 380
RsaNI GTAC 3 cut(s) 19, 109, 379
SaqAI TTAA 4 cut(s) 74, 150, 303, 435
Sau3AI GATC 2 cut(s) 12, 502
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 506
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 2 cut(s) 283, 461
SfcI CTRYAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 5 cut(s) 112, 278, 408, 465, 529
SsiI CCGC 3 cut(s) 22, 32, 481
SspMI CTAG 3 cut(s) 50, 255, 516
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 3 cut(s) 66, 102, 202
TaqI TCGA 2 cut(s) 260, 477
TasI AATT 5 cut(s) 112, 278, 408, 465, 529
Tru1I TTAA 4 cut(s) 74, 150, 303, 435
Tru9I TTAA 4 cut(s) 74, 150, 303, 435
TspDTI ATGAA 3 cut(s) 105, 219, 371
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 50, 255, 516
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.