Prupe.6G315400_v2.0.a1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016061
Physical Location & Seq
Reverse (-)
28119213 .. 28119572
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G315400.1

Sequence Viewer

Length: 360 bp
ATGGAGGAGACTCGCTACCGCTCCTATGCAGGAGCTGGCTGCCGGAACCTAGACATGGTGAACGTAAGGAGATTAAGCGAAAACCGGACAATGTATATGGGGAGGTCTCATTTGGATCCCTCATGGGCTCCCTATCCCATGAAAACAAGACAACGTGATATTCAATTACGCATTGGTGGGAAGAAACCCAAAGAGAGGTCCTCTAAGCCATCCAAATTATGGTGGAACGATCCAGAGTTTAAGAGAAGAGGCCGAGTGGCCAGATATAAGTTGTATGGCGCTGAGGGCAAGGTCAAGAGGTCTTTGAAGAAAGGTTACCGTTGGTTCAAGCGCAAATGTCTCGAGATTGTACTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

120

Amino Acids

14.34

Weight (kDa)

10.77

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 21
AciI CCGC 1 cut(s) 19
AclWI GGATC 3 cut(s) 110, 123, 224
AcoI YGGCCR 1 cut(s) 258
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 55, 195, 219
AgsI TTSAA 3 cut(s) 164, 307, 328
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 2, 111, 344
AlwI GGATC 3 cut(s) 110, 123, 224
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 250, 258
ApeKI GCWGC 1 cut(s) 39
AspLEI GCGC 2 cut(s) 281, 333
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 130
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BcoDI GTCTC 3 cut(s) 2, 111, 344
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 3 cut(s) 47, 117, 129
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu10I CCTNAGC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 195, 219
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 3 cut(s) 55, 195, 219
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 252, 260
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 43, 85
BslI CCNNNNNNNGG 3 cut(s) 55, 195, 219
BsmAI GTCTC 3 cut(s) 2, 111, 344
BsnI GGCC 2 cut(s) 252, 260
Bso31I GGTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 115, 229
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 252, 260
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 47, 117, 129
BspPI GGATC 3 cut(s) 110, 123, 224
BspTNI GGTCTC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 21
BssMI GATC 2 cut(s) 115, 229
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 204, 282
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 281, 333
BstKTI GATC 2 cut(s) 118, 232
BstMAI GTCTC 3 cut(s) 2, 111, 344
BstMBI GATC 2 cut(s) 115, 229
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstPI GGTNACC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 252, 260
BtsCI GGATG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 2 cut(s) 281, 333
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 55, 123, 139
CviJI RGCY 6 cut(s) 35, 39, 128, 208, 252, 260
CviKI_1 RGCY 6 cut(s) 35, 39, 128, 208, 252, 260
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 2 cut(s) 204, 282
DpnI GATC 2 cut(s) 117, 231
DpnII GATC 2 cut(s) 115, 229
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 3 cut(s) 58, 126, 142
FaiI YATR 9 cut(s) 27, 56, 96, 98, 124, 140, 220, 267, 276
FatI CATG 3 cut(s) 54, 122, 138
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 280, 332
GluI GCNGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 252, 260
HapII CCGG 2 cut(s) 43, 85
HhaI GCGC 2 cut(s) 281, 333
Hin1II CATG 3 cut(s) 58, 126, 142
Hin6I GCGC 2 cut(s) 279, 331
HinP1I GCGC 2 cut(s) 279, 331
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 43, 85
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 4 cut(s) 233, 295, 341, 343
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 63, 154
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 2 cut(s) 204, 282
HpySE526I ACGT 2 cut(s) 63, 154
Hsp92II CATG 3 cut(s) 58, 126, 142
HspAI GCGC 2 cut(s) 279, 331
Kzo9I GATC 2 cut(s) 115, 229
LmnI GCTCC 3 cut(s) 26, 32, 133
LpnPI CCDG 6 cut(s) 15, 21, 56, 98, 246, 274
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 63, 154
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 117, 231
MbiI CCGCTC 1 cut(s) 21
MboI GATC 2 cut(s) 115, 229
MboII GAAGA 3 cut(s) 193, 258, 319
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 164, 215
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 7 cut(s) 96, 130, 189, 211, 242, 277, 291
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 74, 240
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 2 cut(s) 43, 85
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 2 cut(s) 115, 229
NlaIII CATG 3 cut(s) 58, 126, 142
NlaIV GGNNCC 3 cut(s) 47, 117, 129
NmeAIII GCCGAG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 47, 117, 129
PspPI GGNCC 1 cut(s) 198
PspPPI RGGWCCY 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 74, 240
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 115, 229
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 37, 51, 66, 107, 157, 200, 294, 302, 316
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 164, 215
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 66, 157
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 164, 215
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 2 cut(s) 74, 240
Tru9I TTAA 2 cut(s) 74, 240
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 341
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.