Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0016061

Physical Location & Seq

Genomic Coordinates Reverse (-)

94443 .. 94868

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggtggaggagatccagtaccgctcgtatgcggaagctggccggaacctagagatggtgaacgtgaggagattaaccgaaaactacagcacaatatacgtagacaggtacaattcatctcagtacttgtcatgggctcctccttctgttaatcctcctcccttccttacagaaagggttagacgacgacaacaacaacgtgatgactgccagtttgggaaggcagagccgaatagagaggtgctggaggtgcctaggtcgaagaataagccgttcaaattgtggtggaatgatgcagagattaagagaagaggaagggttgctaaatataagttgtatggtgctgaagggaagatgaagatgtcgttgaagaaagggtaccgttggttcaagaagaaatgccttgaaattgtaagtaacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3511

Protein Analysis

141

Amino Acids

16.96

Weight (kDa)

9.97

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05725
fragaria_vesca	FvH4_6g07171
malus_domestica	MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica	Prupe.6G315400_v2.0.a1
pyrus_communis	pycom12g19540
rosa_chinensis	RchiOBHm_Chr3g0456821
rosa_laevigata	RLG00000025276
rosa_multiflora	Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422470
rosa_rugosa	Rorug03G0016000
rosa_samantha	Rh3AG076300 Rh3DG080000
rosa_wichuraiana	Rw3G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	250, 378
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	2 cut(s)	22, 32
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	4 cut(s)	20, 110, 125, 380
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	4 cut(s)	277, 370, 391, 407
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp718I	GGTACC	1 cut(s)	378
AspA2I	CCTAGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	250, 378
BanII	GRGCYC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	50, 255
BfmI	CTRYAG	1 cut(s)	85
BlnI	CCTAGG	1 cut(s)	254
BmcAI	AGTACT	1 cut(s)	125
BmiI	GGNNCC	4 cut(s)	47, 138, 252, 380
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	16, 211
BseDI	CCNNGG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	16, 211
BseRI	GAGGAG	4 cut(s)	23, 82, 129, 147
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	2 cut(s)	250, 378
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	22, 32
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	4 cut(s)	47, 138, 252, 380
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	2 cut(s)	250, 378
BsrBI	CCGCTC	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	16, 211
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	19, 109, 124, 379
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	5 cut(s)	38, 42, 137, 229, 271
CviKI_1	RGCY	5 cut(s)	38, 42, 137, 229, 271
CviQI	GTAC	4 cut(s)	19, 109, 124, 379
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco105I	TACGTA	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	135
FaiI	YATR	5 cut(s)	30, 97, 133, 330, 339
FatI	CATG	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	50, 255
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	135
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	61, 103
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	2 cut(s)	61, 103
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	5 cut(s)	153, 172, 214, 309, 341
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	3 cut(s)	63, 99, 199
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	3 cut(s)	63, 99, 199
Hsp92II	CATG	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	24, 29, 56, 91, 224, 230
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	50, 255
MaeII	ACGT	3 cut(s)	63, 99, 199
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	1 cut(s)	14
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	1 cut(s)	12
MboII	GAAGA	6 cut(s)	274, 321, 364, 370, 382, 406
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	112, 278, 408
MnlI	CCTC	7 cut(s)	60, 150, 165, 168, 232, 241, 305
MseI	TTAA	3 cut(s)	74, 150, 303
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	4 cut(s)	47, 138, 252, 380
Ppu21I	YACGTR	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	47, 138, 252, 380
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	4 cut(s)	20, 110, 125, 380
RsaNI	GTAC	4 cut(s)	19, 109, 124, 379
SaqAI	TTAA	3 cut(s)	74, 150, 303
Sau3AI	GATC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	40, 51, 66, 102, 110, 202, 243, 252, 260
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	85
SnaBI	TACGTA	1 cut(s)	100
Sse9I	AATT	3 cut(s)	112, 278, 408
SsiI	CCGC	2 cut(s)	22, 32
SspMI	CTAG	2 cut(s)	50, 255
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	3 cut(s)	66, 102, 202
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	112, 278, 408
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	74, 150, 303
Tru9I	TTAA	3 cut(s)	74, 150, 303
TspDTI	ATGAA	2 cut(s)	105, 371
XmaJI	CCTAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	50, 255
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.