Rorug03G0016000

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016061
Physical Location & Seq
Forward (+)
1287966 .. 1289075
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0016000.1

Sequence Viewer

Length: 1110 bp
ATGACACTTGATTTGAAACACAAAGTCAGTCAGGGCAGCTATTGGAAAAAGAAGGATGATGCAGTTGAGGACTTGTTGGATACATACAAGAATATTATGCCACGCAGGTATTCTTATTGGGATATTAACAAGATGACGAATGGTTTCAAAGATAAACTTGGCCAAGGAGGCTTTGGTTCTGTTTACAAAGGAGAGCTGTCAAATGGTCATCTTGTTGCAGTAAAGATGCTGAGTGGTTCCAAAGGCAATGGACAAGATTTCGTTAATGAAGTTGGCACAATAGGAAGAATCCATCATGTCAATGTGGTGCAACTAATCGGATTCTGTTCTGTAGGATCAAAACGAGCTCTTGTTTATGACTTCATGCCTAATGGATCCCTAGAAAAACATATCTTTCAGGATCAAGAAAACAATCTTGCTCTAAGTTGGGATAGAATGCTTGAGATAGCGTTGGGGGTGGCTCGCGCTATTGAGTATCTACACCAAGGCTGTGATGTGCAAATTCTTCATTTTGATATTAAGCCTCACAACATTCTTCTTGATGAAAATTTTAATTCAAAAATATCAGACTTCGGGCTTGCAAGATTTTACCCAAGAGACCGGAACACAATTTCTGTTACTGCAGTAAGAGGTACAATGGGGTATATAGCTCCGGAAATGTTCTACAGAAGTATTGGTGGTGTTTCCTACAAAGCTGAAGTTTATAGCTTTGGAATGTTGTTGATGGAAATGTCAGGGCGCAGGAAGAACATAAATACACATGTACAAAATTCAAGCCAAATATACTTCCCTCTCTGGATTTATGAGCAACTAGAAAAGGGATTGAGCCTTGAAATTGAGGAGGCATGTGAGAATGATAAGAAAATAGCCAAGAAGATGATCATGGTTGCTTTGTGGTGCATACAACTGATGCCTGCGGACCGCCCTTCTATGACCAAGGTTTTAGATATGCTTGAAGGTGAAGATGGAGCCTTGCAAATGGCTCCGAAACCTTTCTTTTGTCCTCAACAGATGCCAACGGAGGATCTACCTGATGACAGTGATGAGATGGACATTGAAGAGGTATCTATCCTGCCAGAAAATGCTACAGAATCGACTTCCATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

369

Amino Acids

41.83

Weight (kDa)

5.37

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 49 - 317 2.8e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 50 - 316 2e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 2 cut(s) 917, 922
AclWI GGATC 5 cut(s) 343, 369, 382, 408, 1032
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 3 cut(s) 501, 547, 769
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 2 cut(s) 634, 765
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 7 cut(s) 16, 148, 558, 774, 833, 956, 1058
AluBI AGCT 6 cut(s) 39, 196, 347, 650, 695, 708
AluI AGCT 6 cut(s) 39, 196, 347, 650, 695, 708
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 5 cut(s) 343, 369, 382, 408, 1032
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 3 cut(s) 501, 547, 769
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 2 cut(s) 143, 992
AspLEI GCGC 2 cut(s) 467, 741
AspS9I GGNCC 1 cut(s) 919
AsuHPI GGTGA 1 cut(s) 971
AvaII GGWCC 1 cut(s) 919
BalI TGGCCA 1 cut(s) 162
BamHI GGATCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 48
BccI CCATC 4 cut(s) 300, 718, 959, 1042
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 2 cut(s) 380, 812
BfmI CTRYAG 4 cut(s) 330, 621, 664, 1086
BfuAI ACCTGC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 919
BmgT120I GGNCC 1 cut(s) 919
BmiI GGNNCC 4 cut(s) 238, 376, 970, 984
BmsI GCATC 4 cut(s) 49, 216, 900, 1002
BpuEI CTTGAG 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 163, 484, 936
BsaWI WCCGGW 2 cut(s) 600, 652
Bse3DI GCAATG 1 cut(s) 253
BseAI TCCGGA 1 cut(s) 652
BseDI CCNNGG 3 cut(s) 163, 484, 936
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 601, 653
BsmAI GTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 349
Bsp13I TCCGGA 1 cut(s) 652
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 5 cut(s) 335, 374, 400, 879, 1024
BspACI CCGC 2 cut(s) 917, 922
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 222
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 4 cut(s) 238, 376, 970, 984
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 5 cut(s) 343, 369, 382, 408, 1032
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 253
BsrGI TGTACA 1 cut(s) 763
BssECI CCNNGG 3 cut(s) 163, 484, 936
BssMI GATC 5 cut(s) 335, 374, 400, 879, 1024
BssT1I CCWWGG 3 cut(s) 163, 484, 936
Bst4CI ACNGT 1 cut(s) 1040
Bst6I CTCTTC 1 cut(s) 1053
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 463, 579, 915
BstDEI CTNAG 2 cut(s) 230, 422
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 2 cut(s) 467, 741
BstKTI GATC 5 cut(s) 338, 377, 403, 882, 1027
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 5 cut(s) 335, 374, 400, 879, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 764, 849
BstSFI CTRYAG 4 cut(s) 330, 621, 664, 1086
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 374, 1024
BstYI RGATCY 2 cut(s) 374, 1024
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 1045
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 463, 579, 915
CfoI GCGC 2 cut(s) 467, 741
Cfr13I GGNCC 1 cut(s) 919
CpoI CGGWCCG 1 cut(s) 919
Csp6I GTAC 2 cut(s) 633, 764
CspI CGGWCCG 1 cut(s) 919
CviAII CATG 5 cut(s) 296, 364, 761, 846, 883
CviQI GTAC 2 cut(s) 633, 764
DdeI CTNAG 2 cut(s) 230, 422
DpnI GATC 5 cut(s) 337, 376, 402, 881, 1026
DpnII GATC 5 cut(s) 335, 374, 400, 879, 1024
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 1053
EarI CTCTTC 1 cut(s) 1053
Ecl136II GAGCTC 1 cut(s) 347
Eco130I CCWWGG 3 cut(s) 163, 484, 936
Eco24I GRGCYC 1 cut(s) 349
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 717
EcoICRI GAGCTC 1 cut(s) 347
EcoT14I CCWWGG 3 cut(s) 163, 484, 936
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 3 cut(s) 163, 484, 936
FaeI CATG 5 cut(s) 299, 367, 764, 849, 886
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 5 cut(s) 295, 363, 760, 845, 882
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 380, 812
GlaI GCGC 2 cut(s) 466, 740
GluI GCNGC 1 cut(s) 37
HaeIII GGCC 1 cut(s) 162
HapII CCGG 2 cut(s) 601, 653
HhaI GCGC 2 cut(s) 467, 741
Hin1II CATG 5 cut(s) 299, 367, 764, 849, 886
Hin6I GCGC 2 cut(s) 465, 739
HinP1I GCGC 2 cut(s) 465, 739
HinfI GANTC 3 cut(s) 288, 321, 1091
HpaII CCGG 2 cut(s) 601, 653
HphI GGTGA 1 cut(s) 971
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 320, 568, 987
Hpy188III TCNNGA 5 cut(s) 398, 404, 539, 653, 796
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 46, 936, 950
HpyCH4III ACNGT 1 cut(s) 1040
HpyCH4V TGCA 8 cut(s) 62, 218, 310, 499, 581, 623, 900, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 230, 422
Hsp92II CATG 5 cut(s) 299, 367, 764, 849, 886
HspAI GCGC 2 cut(s) 465, 739
Kpn2I TCCGGA 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 5 cut(s) 335, 374, 400, 879, 1024
LmnI GCTCC 3 cut(s) 655, 968, 988
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 4 cut(s) 49, 216, 900, 1002
MaeI CTAG 2 cut(s) 380, 812
MaeIII GTNAC 1 cut(s) 616
MalI GATC 5 cut(s) 337, 376, 402, 881, 1026
MboI GATC 5 cut(s) 335, 374, 400, 879, 1024
MboII GAAGA 7 cut(s) 297, 497, 527, 757, 886, 974, 1070
MflI RGATCY 2 cut(s) 374, 1024
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 6 cut(s) 501, 547, 553, 609, 769, 834
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 162
MroI TCCGGA 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 143, 992
MscI TGGCCA 1 cut(s) 162
MseI TTAA 4 cut(s) 126, 264, 519, 552
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 2 cut(s) 601, 653
Mva1269I GAATGC 1 cut(s) 441
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 5 cut(s) 335, 374, 400, 879, 1024
NlaIII CATG 5 cut(s) 299, 367, 764, 849, 886
NlaIV GGNNCC 4 cut(s) 238, 376, 970, 984
NspI RCATGY 2 cut(s) 764, 849
PciI ACATGT 1 cut(s) 760
PctI GAATGC 1 cut(s) 441
PdmI GAANNNNTTC 2 cut(s) 143, 992
PfeI GAWTC 3 cut(s) 288, 321, 1091
PkrI GCNGC 1 cut(s) 38
PscI ACATGT 1 cut(s) 760
Psp124BI GAGCTC 1 cut(s) 349
PspN4I GGNNCC 4 cut(s) 238, 376, 970, 984
PspPI GGNCC 1 cut(s) 919
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 374, 1024
RsaI GTAC 2 cut(s) 634, 765
RsaNI GTAC 2 cut(s) 633, 764
RseI CAYNNNNRTG 1 cut(s) 300
Rsr2I CGGWCCG 1 cut(s) 919
RsrII CGGWCCG 1 cut(s) 919
SacI GAGCTC 1 cut(s) 349
SaqAI TTAA 4 cut(s) 126, 264, 519, 552
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 5 cut(s) 335, 374, 400, 879, 1024
Sau96I GGNCC 1 cut(s) 919
SduI GDGCHC 1 cut(s) 349
SfaNI GCATC 4 cut(s) 49, 216, 900, 1002
SfcI CTRYAG 4 cut(s) 330, 621, 664, 1086
SinI GGWCC 1 cut(s) 919
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 6 cut(s) 501, 547, 553, 609, 769, 834
SsiI CCGC 2 cut(s) 917, 922
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 380, 812
SstI GAGCTC 1 cut(s) 349
StyI CCWWGG 3 cut(s) 163, 484, 936
TaaI ACNGT 1 cut(s) 1040
TaqI TCGA 1 cut(s) 1094
TasI AATT 6 cut(s) 501, 547, 553, 609, 769, 834
TatI WGTACW 1 cut(s) 763
TfiI GAWTC 3 cut(s) 288, 321, 1091
Tru1I TTAA 4 cut(s) 126, 264, 519, 552
Tru9I TTAA 4 cut(s) 126, 264, 519, 552
TscAI CASTG 1 cut(s) 1045
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 4 cut(s) 282, 352, 497, 558
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 1 cut(s) 1045
VpaK11BI GGWCC 1 cut(s) 919
XapI RAATTY 3 cut(s) 501, 547, 769
XceI RCATGY 2 cut(s) 764, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 143, 992
XspI CTAG 2 cut(s) 380, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.