MD12G1207900.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016061
Physical Location & Seq
Reverse (-)
28757407 .. 28757790
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1207900.v1.1.491

Sequence Viewer

Length: 384 bp
ATGATGGAGGAGATTCGATACCGCTCGTATGTAACTGCTGATTACCGGAACAACCTAGAGACGGTGAACGTGAGGAGGTTAAGCGAAAACCAAACAATGTACGCGGGGAGGTCACATTTTCATCCGTCATGGGATCCGAATCCCCCCATGAAAATACGACAATGCAGCGATCTTCAAGTGCGGGTCGGGGGGAAGAAGGCGAGGAAAGAGAGATCGTCGTCGACGAAGTCGTTGAAATTGTGGTGGAACGATCCGGAGATTAAGAGAAGAGGGCGAGTGGCTAGGTATAAGTTGTATGATGCCGAGGGGAAGGTCAAGAGGTCTTTGAAGAAAGGATACCGTTGGTTCAAGAAGAAATGTCTCGAGATTGTACGTACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

128

Amino Acids

15.28

Weight (kDa)

10.39

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 82 - 125 2.7e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 221
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 3 cut(s) 22, 104, 181
AclWI GGATC 3 cut(s) 128, 141, 245
AfaI GTAC 3 cut(s) 101, 372, 376
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 176, 235, 328, 349
Alw26I GTCTC 2 cut(s) 53, 365
AlwI GGATC 3 cut(s) 128, 141, 245
Ama87I CYCGRG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 362
BamHI GGATCC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbvI GCAGC 1 cut(s) 177
BciVI GTATCC 1 cut(s) 329
BcoDI GTCTC 2 cut(s) 53, 365
BfaI CTAG 2 cut(s) 56, 282
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 2 cut(s) 45, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 23, 88
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 46, 254
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 2 cut(s) 53, 365
BsmBI CGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 4 cut(s) 133, 169, 212, 250
BspACI CCGC 3 cut(s) 22, 104, 181
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 3 cut(s) 128, 141, 245
BsrBI CCGCTC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 133, 169, 212, 250
Bst4CI ACNGT 2 cut(s) 64, 341
Bst6I CTCTTC 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 374
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 4 cut(s) 136, 172, 215, 253
BstMAI GTCTC 2 cut(s) 53, 365
BstMBI GATC 4 cut(s) 133, 169, 212, 250
BstSNI TACGTA 1 cut(s) 374
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuI GTATCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 121
Csp6I GTAC 3 cut(s) 100, 371, 375
CviAII CATG 2 cut(s) 129, 148
CviJI RGCY 1 cut(s) 281
CviKI_1 RGCY 1 cut(s) 281
CviQI GTAC 3 cut(s) 100, 371, 375
DpnI GATC 4 cut(s) 135, 171, 214, 252
DpnII GATC 4 cut(s) 133, 169, 212, 250
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco105I TACGTA 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 2 cut(s) 132, 151
FaiI YATR 5 cut(s) 30, 130, 149, 288, 297
FatI CATG 2 cut(s) 128, 147
FauI CCCGC 2 cut(s) 97, 174
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 56, 282
GluI GCNGC 1 cut(s) 166
HapII CCGG 2 cut(s) 46, 254
Hin1II CATG 2 cut(s) 132, 151
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 13, 139
HpaII CCGG 2 cut(s) 46, 254
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 67, 222
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 5 cut(s) 254, 316, 349, 362, 364
Hpy8I GTNNAC 2 cut(s) 67, 222
Hpy99I CGWCG 3 cut(s) 220, 223, 226
HpyAV CCTTC 2 cut(s) 190, 304
HpyCH4III ACNGT 2 cut(s) 64, 341
HpyCH4IV ACGT 2 cut(s) 69, 373
HpyCH4V TGCA 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 69, 373
Hsp92II CATG 2 cut(s) 132, 151
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 133, 169, 212, 250
LpnPI CCDG 2 cut(s) 59, 267
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 56, 282
MaeII ACGT 2 cut(s) 69, 373
MaeIII GTNAC 2 cut(s) 31, 111
MalI GATC 4 cut(s) 135, 171, 214, 252
MbiI CCGCTC 1 cut(s) 24
MboI GATC 4 cut(s) 133, 169, 212, 250
MboII GAAGA 5 cut(s) 164, 205, 279, 340, 364
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 236
MnlI CCTC 7 cut(s) 66, 69, 102, 195, 263, 298, 312
MroI TCCGGA 1 cut(s) 253
MseI TTAA 2 cut(s) 80, 261
MspI CCGG 2 cut(s) 46, 254
MvnI CGCG 1 cut(s) 104
NdeII GATC 4 cut(s) 133, 169, 212, 250
NlaIII CATG 2 cut(s) 132, 151
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 362
PcsI WCGNNNNNNNCGW 2 cut(s) 221, 227
PfeI GAWTC 2 cut(s) 13, 139
PflFI GACNNNGTC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 226
RsaI GTAC 3 cut(s) 101, 372, 376
RsaNI GTAC 3 cut(s) 100, 371, 375
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 80, 261
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 4 cut(s) 133, 169, 212, 250
SetI ASST 8 cut(s) 57, 72, 80, 113, 287, 315, 323, 376
SfaNI GCATC 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 362
SgrDI CGTCGACG 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 374
Sse9I AATT 1 cut(s) 236
SsiI CCGC 3 cut(s) 22, 104, 181
SspMI CTAG 2 cut(s) 56, 282
TaaI ACNGT 2 cut(s) 64, 341
TaiI ACGT 2 cut(s) 72, 376
TaqI TCGA 3 cut(s) 16, 221, 363
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 13, 139
Tru1I TTAA 2 cut(s) 80, 261
Tru9I TTAA 2 cut(s) 80, 261
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 110, 164
TspGWI ACGGA 1 cut(s) 114
Tth111I GACNNNGTC 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 2 cut(s) 56, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.