Rroxscaffold_6G00422470

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016061
Physical Location & Seq
Reverse (-)
43353610 .. 43354598
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422470.1

Sequence Viewer

Length: 540 bp
ATGGTGGAGGAGATCCAGTACCGCTCCTATGCGGGAGCTGGCCGGAACCTAGAGATGGTGAACGTGAGGAGATTAAGCGAAAACTACAGCACAATATACGTAGACAGGTACATTAATTCATCTCAGTACTTGTCATGGGCTCCTCCTTCTGTTAATCCTCCTCCCTTCCTTATAGAAAGGGTTAGACGACGACAACAACAACGTGATGAATGCGGGTTTGGGAAGGCAGAGCCGAATAGAGAGGTGCTGGAGGTGCCTAGGTCGAAGAATAAGCCGTTCAAATTGTGGTGGAATGATGCAGAGATTAAGAGAAGAGGAAGGGTTGCTAAATATAAGTTGTATGGTGCTGAAGGGAAGATGAAGATGTCGTTGAAGAAAGGGTACCGTTGGTTCAAGAAGAAATGCCTTGAAATTGGCCCTATAACTAACTTGAGATTTAAGGTCATGCATAGAGCATCATTTTACGAAATTGAAGATATCGACCGCGACCACACTATGCGATGTGATCCTCTAGACTTTAGTCATGCAGCCAATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

179

Amino Acids

21.36

Weight (kDa)

9.75

Isoelectric Point (pI)

65.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 97 - 138 7.3e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 253, 381
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 486
AciI CCGC 4 cut(s) 22, 32, 213, 484
AclWI GGATC 2 cut(s) 7, 500
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 4 cut(s) 20, 110, 128, 383
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 5 cut(s) 280, 373, 394, 410, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 2 cut(s) 7, 500
AoxI GGCC 2 cut(s) 40, 415
ApeKI GCWGC 1 cut(s) 527
AseI ATTAAT 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 381
AspA2I CCTAGG 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 257
BanI GGYRCC 2 cut(s) 253, 381
BanII GRGCYC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 259
BfaI CTAG 3 cut(s) 50, 258, 512
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 528
BlnI CCTAGG 1 cut(s) 257
BlsI GCNGC 1 cut(s) 529
BmcAI AGTACT 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 4 cut(s) 47, 141, 255, 383
BmsI GCATC 2 cut(s) 286, 464
BoxI GACNNNNGTC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 257
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 4 cut(s) 23, 82, 132, 150
Bsh1236I CGCG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 42, 417
BshNI GGYRCC 2 cut(s) 253, 381
BsiEI CGRYCG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 55
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 42, 417
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 12, 505
BspACI CCGC 4 cut(s) 22, 32, 213, 484
BspANI GGCC 2 cut(s) 42, 417
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 4 cut(s) 47, 141, 255, 383
BspPI GGATC 2 cut(s) 7, 500
BspT107I GGYRCC 2 cut(s) 253, 381
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 12, 505
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 486
BstKTI GATC 2 cut(s) 15, 508
BstMBI GATC 2 cut(s) 12, 505
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 100
BstUI CGCG 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 2 cut(s) 42, 417
BtgZI GCGATG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 4 cut(s) 19, 109, 127, 382
CviAII CATG 3 cut(s) 135, 445, 524
CviJI RGCY 7 cut(s) 38, 42, 140, 232, 274, 417, 530
CviKI_1 RGCY 7 cut(s) 38, 42, 140, 232, 274, 417, 530
CviQI GTAC 4 cut(s) 19, 109, 127, 382
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 14, 507
DpnII GATC 2 cut(s) 12, 505
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 142
Eco32I GATATC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 3 cut(s) 138, 448, 527
FatI CATG 3 cut(s) 134, 444, 523
FauI CCCGC 2 cut(s) 25, 206
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 528
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 3 cut(s) 50, 258, 512
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 42, 417
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 138, 448, 527
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 61, 103
Hpy188III TCNNGA 2 cut(s) 394, 512
Hpy8I GTNNAC 2 cut(s) 61, 103
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 5 cut(s) 156, 175, 217, 312, 344
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 63, 99, 202
HpyCH4V TGCA 3 cut(s) 299, 448, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 63, 99, 202
Hsp92II CATG 3 cut(s) 138, 448, 527
KpnI GGTACC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 12, 505
LmnI GCTCC 3 cut(s) 29, 35, 145
LpnPI CCDG 5 cut(s) 24, 29, 56, 91, 233
LweI GCATC 2 cut(s) 286, 464
MaeI CTAG 3 cut(s) 50, 258, 512
MaeII ACGT 3 cut(s) 63, 99, 202
MalI GATC 2 cut(s) 14, 507
MbiI CCGCTC 1 cut(s) 24
MboI GATC 2 cut(s) 12, 505
MboII GAAGA 7 cut(s) 277, 324, 367, 373, 385, 409, 485
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 5 cut(s) 115, 281, 411, 468, 532
MnlI CCTC 8 cut(s) 60, 153, 168, 171, 235, 244, 308, 519
Mph1103I ATGCAT 1 cut(s) 450
MseI TTAA 5 cut(s) 74, 114, 153, 306, 438
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 215
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 2 cut(s) 12, 505
NlaIII CATG 3 cut(s) 138, 448, 527
NlaIV GGNNCC 4 cut(s) 47, 141, 255, 383
NsiI ATGCAT 1 cut(s) 450
PctI GAATGC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 529
Ppu21I YACGTR 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 519
PshBI ATTAAT 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 47, 141, 255, 383
PspPI GGNCC 1 cut(s) 416
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 4 cut(s) 20, 110, 128, 383
RsaNI GTAC 4 cut(s) 19, 109, 127, 382
SaqAI TTAA 5 cut(s) 74, 114, 153, 306, 438
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 2 cut(s) 12, 505
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 128
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 2 cut(s) 286, 464
SfcI CTRYAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 5 cut(s) 115, 281, 411, 468, 532
SsiI CCGC 4 cut(s) 22, 32, 213, 484
SspMI CTAG 3 cut(s) 50, 258, 512
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 66, 102, 205
TaqI TCGA 2 cut(s) 263, 480
TasI AATT 5 cut(s) 115, 281, 411, 468, 532
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 5 cut(s) 74, 114, 153, 306, 438
Tru9I TTAA 5 cut(s) 74, 114, 153, 306, 438
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 108, 222, 374
VspI ATTAAT 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 511
XmaJI CCTAGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 50, 258, 512
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.