MD04G1195600.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0016061
Physical Location & Seq
Reverse (-)
28422911 .. 28423297
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1195600.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGAGGAGATTCGATACCGTTCATATGCAGTTGCTGGCTGCCGGAACAACCTAGAGATGGTGAACGTGAGGAGATTAAGCGAAAACCGCACAATGTACATGGGGAGGCCACATTTTCATCCATCATGGGATCCGAATCCCTCCATGAAAACAGGACAATGCAACGATCTTCAACTCCGCATCGGGGGGATGAAGGCGAGGACAAAGAGAGTGTCGTCGACGAAGTCGAAGTCGATGAAATTGTGGTGGAAAGATCCAGAGATTAAGAGAAGAGGCCGAGTGGCTAGGTATAAGTTGTATGGTGCTGAGGGGAAGGTGAAGAGATCTTTGAAGAAAGGATACCGTTGGTTCAAGAGGAAATGTCTCGAGATTGTACGTACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

129

Amino Acids

15.27

Weight (kDa)

10.78

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 83 - 126 2.3e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 218
AciI CCGC 2 cut(s) 88, 178
AclWI GGATC 3 cut(s) 125, 138, 248
AfaI GTAC 3 cut(s) 98, 375, 379
AfiI CCNNNNNNNGG 2 cut(s) 58, 184
AgsI TTSAA 3 cut(s) 173, 331, 352
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 3 cut(s) 125, 138, 248
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 2 cut(s) 107, 274
ApeKI GCWGC 1 cut(s) 39
ArsI GACNNNNNNTTYG 4 cut(s) 197, 215, 229, 247
AsuHPI GGTGA 2 cut(s) 73, 328
AvaI CYCGRG 1 cut(s) 365
BamHI GGATCC 1 cut(s) 130
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 52, 130
BciVI GTATCC 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 53, 285
BfuI GTATCC 1 cut(s) 332
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 184
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 2 cut(s) 118, 195
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 58, 184
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 20, 85
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 109, 276
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 58, 184
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 2 cut(s) 109, 276
BsoBI CYCGRG 1 cut(s) 365
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 4 cut(s) 130, 166, 253, 323
BspACI CCGC 2 cut(s) 88, 178
BspANI GGCC 2 cut(s) 109, 276
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 3 cut(s) 125, 138, 248
BsrGI TGTACA 1 cut(s) 96
BssMI GATC 4 cut(s) 130, 166, 253, 323
Bst4CI ACNGT 2 cut(s) 20, 344
Bst6I CTCTTC 2 cut(s) 265, 314
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 118, 195
BstKTI GATC 4 cut(s) 133, 169, 256, 326
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 4 cut(s) 130, 166, 253, 323
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstSNI TACGTA 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 3 cut(s) 130, 253, 323
BstYI RGATCY 3 cut(s) 130, 253, 323
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 109, 276
BtsCI GGATG 2 cut(s) 118, 195
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 35
Csp6I GTAC 3 cut(s) 97, 374, 378
CviAII CATG 3 cut(s) 100, 126, 145
CviJI RGCY 4 cut(s) 39, 109, 276, 284
CviKI_1 RGCY 4 cut(s) 39, 109, 276, 284
CviQI GTAC 3 cut(s) 97, 374, 378
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 132, 168, 255, 325
DpnII GATC 4 cut(s) 130, 166, 253, 323
Eam1104I CTCTTC 2 cut(s) 265, 314
EarI CTCTTC 2 cut(s) 265, 314
Eco105I TACGTA 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 365
FaeI CATG 3 cut(s) 103, 129, 148
FaiI YATR 7 cut(s) 25, 27, 101, 127, 146, 291, 300
FatI CATG 3 cut(s) 99, 125, 144
FauNDI CATATG 1 cut(s) 25
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 105, 202
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 53, 285
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 109, 276
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 103, 129, 148
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 2 cut(s) 10, 136
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 73, 328
Hpy166II GTNNAC 2 cut(s) 64, 219
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 4 cut(s) 257, 352, 365, 367
Hpy8I GTNNAC 2 cut(s) 64, 219
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 2 cut(s) 187, 307
HpyCH4III ACNGT 2 cut(s) 20, 344
HpyCH4IV ACGT 2 cut(s) 66, 376
HpyCH4V TGCA 2 cut(s) 29, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 2 cut(s) 66, 376
Hsp92II CATG 3 cut(s) 103, 129, 148
Kzo9I GATC 4 cut(s) 130, 166, 253, 323
LpnPI CCDG 4 cut(s) 21, 56, 138, 270
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 189
MaeI CTAG 2 cut(s) 53, 285
MaeII ACGT 2 cut(s) 66, 376
MalI GATC 4 cut(s) 132, 168, 255, 325
MboI GATC 4 cut(s) 130, 166, 253, 323
MboII GAAGA 4 cut(s) 161, 282, 331, 343
MflI RGATCY 3 cut(s) 130, 253, 323
MluCI AATT 1 cut(s) 239
MnlI CCTC 7 cut(s) 63, 99, 151, 192, 266, 301, 348
MseI TTAA 2 cut(s) 77, 264
MspI CCGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeI CATATG 1 cut(s) 25
NdeII GATC 4 cut(s) 130, 166, 253, 323
NlaIII CATG 3 cut(s) 103, 129, 148
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PfeI GAWTC 2 cut(s) 10, 136
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 3 cut(s) 130, 253, 323
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 3 cut(s) 98, 375, 379
RsaNI GTAC 3 cut(s) 97, 374, 378
SalI GTCGAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 77, 264
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 4 cut(s) 130, 166, 253, 323
SetI ASST 5 cut(s) 54, 69, 290, 318, 379
SfaNI GCATC 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 365
SgrDI CGTCGACG 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SnaBI TACGTA 1 cut(s) 377
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 88, 178
SspMI CTAG 2 cut(s) 53, 285
TaaI ACNGT 2 cut(s) 20, 344
TaiI ACGT 2 cut(s) 69, 379
TaqI TCGA 5 cut(s) 13, 218, 227, 233, 366
TasI AATT 1 cut(s) 239
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 10, 136
Tru1I TTAA 2 cut(s) 77, 264
Tru9I TTAA 2 cut(s) 77, 264
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 12, 107, 161, 206, 251
Tth111I GACNNNGTC 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 2 cut(s) 53, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.