FvH4_6g07400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011316
Physical Location & Seq
Forward (+)
4436756 .. 4438249
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07400.t1

Sequence Viewer

Length: 753 bp
ATGGGTTCTTCTTCGGTGATAACCCCGGAAGATGTATTAGAGTCTCTAATGAACGACGGCACCATTGACTCTCTCCGATTAAAGATCATCAACCAGCTCAAAGCCAATGAAGAGCTGAAGAGCACGACAATCAAAATGGCGGAGCAGAGCCGAGTTCTCAACACGCCGGGTGCCGAGAAGCAGACGAAACGAGAGCTGTTTGATGCTCTGAGGCAGGAGCTGGAGACCCAAGTGCTGGAGAAGGCGTCCAAGTCTGTTTGGGAGTTGATTTTGGATAATAATGGGATGGGGAAGGAAATCAATCAGACTGTTGAGAGGGTGTTTTGCAAGCTCAGCGGCCGCGAACCGCCGCTGTTTCCTCCTCCTCCTCCTCAAGAAGACGCCAATGCCGGTGGTAAGGACAGTGTCAATGCTAAGGAGAATGCCAATGCTGTTGCGAGTGGTAATGCCAAGGGCAAGGGCAAGGCGAATGGGAAGGGGAGAGTGAAGGCAAAGGGGAAGGGAAAAGAGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGGCGAGTGAAAAAGTTGAAGCCAAGCCTGAAGAGGAGAAGTCGAATACAAAGAAGAGGAGTTTCAGTCAGGTAAATGCACAAGGAGAAGGAGATGGAGAAGCTCATGTGGGTTTGGAGCAACAAGTTGAAGTCAAGGCTGAAGTAGTTGAAGCTAGGCCTGAAGAAGGTCAGGCTATGGCAGAAGACCCTCGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.33

Weight (kDa)

5.52

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AccB1I GGYRCC 2 cut(s) 59, 170
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 342
AciI CCGC 5 cut(s) 140, 336, 340, 347, 350
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 4 cut(s) 137, 603, 714, 735
AcyI GRCGYC 2 cut(s) 245, 381
AfiI CCNNNNNNNGG 2 cut(s) 235, 719
AgsI TTSAA 3 cut(s) 572, 683, 704
AluBI AGCT 7 cut(s) 97, 115, 196, 220, 331, 656, 707
AluI AGCT 7 cut(s) 97, 115, 196, 220, 331, 656, 707
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 218
AlwNI CAGNNNCTG 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 2 cut(s) 337, 710
AsuC2I CCSGG 2 cut(s) 26, 168
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 744
BanI GGYRCC 2 cut(s) 59, 170
BbsI GAAGAC 2 cut(s) 384, 744
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 2 cut(s) 280, 641
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 26, 168
BcoDI GTCTC 2 cut(s) 48, 218
BfaI CTAG 1 cut(s) 708
BisI GCNGC 3 cut(s) 337, 340, 350
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 338, 341, 351
Bme1390I CCNGG 2 cut(s) 26, 168
BmeT110I CYCGRG 1 cut(s) 744
BmiI GGNNCC 2 cut(s) 61, 172
BmrFI CCNGG 2 cut(s) 26, 168
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 2 cut(s) 384, 744
BpmI CTGGAG 2 cut(s) 242, 257
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 26, 168
BsaHI GRCGYC 2 cut(s) 245, 381
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 24, 450
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 719
Bse118I RCCGGY 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 24, 450
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 235, 719
BseMII CTCAG 2 cut(s) 200, 346
BseRI GAGGAG 6 cut(s) 351, 354, 357, 360, 602, 625
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 339, 712
BshNI GGYRCC 2 cut(s) 59, 170
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 3 cut(s) 26, 167, 390
BslI CCNNNNNNNGG 2 cut(s) 235, 719
BsmAI GTCTC 2 cut(s) 48, 218
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 2 cut(s) 339, 712
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 5 cut(s) 140, 336, 340, 347, 350
BspANI GGCC 2 cut(s) 339, 712
BspCNI CTCAG 2 cut(s) 201, 345
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 61, 172
BspQI GCTCTTC 2 cut(s) 105, 113
BspT107I GGYRCC 2 cut(s) 59, 170
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 24, 450
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 2 cut(s) 245, 381
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 310, 404
Bst6I CTCTTC 4 cut(s) 105, 113, 579, 602
BstACI GRCGYC 2 cut(s) 245, 381
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 209, 332, 414
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 48, 218
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 24, 166
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 2 cut(s) 384, 744
BstZI CGGCCG 1 cut(s) 337
BsuRI GGCC 2 cut(s) 339, 712
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 220
CciNI GCGGCCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 389
CseI GACGC 2 cut(s) 234, 389
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 1 cut(s) 659
DdeI CTNAG 3 cut(s) 209, 332, 414
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 105, 113, 579, 602
EarI CTCTTC 4 cut(s) 105, 113, 579, 602
EciI GGCGGA 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 712
Eco31I GGTCTC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 137, 603, 714, 735
Eco88I CYCGRG 1 cut(s) 744
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 662
FaiI YATR 2 cut(s) 660, 731
FatI CATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 337, 340, 350
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 337, 340, 350
FspBI CTAG 1 cut(s) 708
GluI GCNGC 3 cut(s) 337, 340, 350
GsuI CTGGAG 2 cut(s) 242, 257
HaeIII GGCC 2 cut(s) 339, 712
HapII CCGG 3 cut(s) 26, 167, 390
HgaI GACGC 2 cut(s) 234, 389
Hin1I GRCGYC 2 cut(s) 245, 381
Hin1II CATG 1 cut(s) 662
HinfI GANTC 3 cut(s) 41, 68, 747
HpaII CCGG 3 cut(s) 26, 167, 390
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 77, 210, 306, 752
Hpy188III TCNNGA 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 310, 404
HpyCH4V TGCA 2 cut(s) 327, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 3 cut(s) 209, 332, 414
Hsp92I GRCGYC 2 cut(s) 245, 381
Hsp92II CATG 1 cut(s) 662
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 2 cut(s) 105, 113
LmnI GCTCC 3 cut(s) 142, 217, 670
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 708
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 9 cut(s) 3, 41, 122, 130, 389, 596, 619, 728, 749
MhlI GDGCHC 1 cut(s) 125
MlyI GAGTC 2 cut(s) 50, 62
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 336, 352
MspI CCGG 3 cut(s) 26, 167, 390
MspR9I CCNGG 2 cut(s) 26, 168
Mva1269I GAATGC 1 cut(s) 427
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 333
NciI CCSGG 2 cut(s) 26, 168
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 662
NlaIV GGNNCC 2 cut(s) 61, 172
NmeAIII GCCGAG 2 cut(s) 176, 199
NotI GCGGCCGC 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 744
PceI AGGCCT 1 cut(s) 712
PciSI GCTCTTC 2 cut(s) 105, 113
PctI GAATGC 1 cut(s) 427
PflFI GACNNNGTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 3 cut(s) 338, 341, 351
PleI GAGTC 2 cut(s) 49, 62
PpsI GAGTC 2 cut(s) 49, 62
PspN4I GGNNCC 2 cut(s) 61, 172
PspXI VCTCGAGB 1 cut(s) 744
PstNI CAGNNNCTG 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 404
SapI GCTCTTC 2 cut(s) 105, 113
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 3 cut(s) 337, 340, 350
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 2 cut(s) 50, 62
ScrFI CCNGG 2 cut(s) 26, 168
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 744
SlaI CTCGAG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 372, 744
SmoI CTYRAG 2 cut(s) 372, 744
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 5 cut(s) 140, 336, 340, 347, 350
SspMI CTAG 1 cut(s) 708
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 2 cut(s) 24, 166
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 310, 404
TaqI TCGA 2 cut(s) 596, 745
TauI GCSGC 3 cut(s) 339, 342, 352
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 65, 123
TspRI CASTG 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 404
Van91I CCANNNNNTGG 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 717
XhoI CTCGAG 1 cut(s) 744
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.