Rroxscaffold_6G00422280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011316
Physical Location & Seq
Reverse (-)
43241990 .. 43243256
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422280.1

Sequence Viewer

Length: 702 bp
ATGGGTTCTTCTTCGGTGATAAGCCCAGAAGATGTATTGGAGTCTCTAATGAACGACGGCACCATTGACTCTCTCAGATTAAAGATCATCAACCAGCTCAAAGCCAATGAAGAGCTGAAGAGCACGACAATCAAAATGGCGGAGCAAAGCCGAGTTCTCAACACTCCCGGGGCCGAGAAGCAGACGAAGAGAGAGCTGTTTGATGCTCTGAGGCAGGAGCTTGAGACCCAAGTGCTGGAGAAGGCTTCCAAGTCTGTTTGGGAGTTGATTTTGGATAACAATGGAATGGGAAAGGAAATCAATCAAACTGTTGAAAGGGTGTTCTGCAAACTCAGCGGCCGCGAACCGCCCCTGTTTCCTCCTCAACAAGATGCCAATGCCAATGCCAATGCCAATGCTAATGTTAAGGATAATGCCAATGCCAATGCCAAGGGAAAGGGGAAGGCGAATGGGAAAGGAAAAGTGAAGGGAAAGGGGAAGGGGAAAGAGAAGGTAAAGGAGGCGGCGAGTGAACAAGTTGAAGCCAAGCCTGAGGAGGAGAAGTTGAATTCAAAGAAGAGGAGTTTCAGTGAAGTGAATGCACAAGGAGAAGGAGATGGAGAACCTCCTGTAGGGTTGGACCTAAAAGTTGAAGCCAAGCCTGAAGTTGAAGCCGGGCCTCAAGAAGGTCCTGTAGCTATGGCGGATGACCCTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.14

Weight (kDa)

5.31

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 342
AciI CCGC 6 cut(s) 140, 336, 340, 347, 503, 683
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 2 cut(s) 137, 663
AfiI CCNNNNNNNGG 3 cut(s) 235, 611, 665
AgsI TTSAA 6 cut(s) 314, 521, 547, 552, 632, 650
AluBI AGCT 5 cut(s) 97, 115, 196, 220, 677
AluI AGCT 5 cut(s) 97, 115, 196, 220, 677
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 218
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 3 cut(s) 171, 337, 656
ApoI RAATTY 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 171, 619, 656, 668
AsuC2I CCSGG 3 cut(s) 168, 169, 655
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 619, 668
AxyI CCTNAGG 1 cut(s) 531
BanI GGYRCC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 590
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 3 cut(s) 168, 169, 655
BcoDI GTCTC 2 cut(s) 48, 218
BfmI CTRYAG 2 cut(s) 609, 672
BisI GCNGC 3 cut(s) 337, 340, 504
BlsI GCNGC 3 cut(s) 338, 341, 505
Bme1390I CCNGG 3 cut(s) 168, 169, 655
Bme18I GGWCC 2 cut(s) 619, 668
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 4 cut(s) 171, 619, 656, 668
BmiI GGNNCC 2 cut(s) 61, 172
BmrFI CCNGG 3 cut(s) 168, 169, 655
BmsI GCATC 2 cut(s) 193, 361
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 3 cut(s) 242, 645, 678
BpuMI CCSGG 3 cut(s) 168, 169, 655
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 167, 168, 429
BsaXI ACNNNNNCTCC 4 cut(s) 527, 553, 557, 583
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 611, 665
Bse21I CCTNAGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 167, 168, 429
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 3 cut(s) 235, 611, 665
BseMII CTCAG 4 cut(s) 88, 200, 346, 522
BseRI GAGGAG 4 cut(s) 351, 548, 551, 574
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 3 cut(s) 173, 339, 658
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 168, 654
BslI CCNNNNNNNGG 3 cut(s) 235, 611, 665
BsmAI GTCTC 2 cut(s) 48, 218
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 3 cut(s) 173, 339, 658
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 6 cut(s) 140, 336, 340, 347, 503, 683
BspANI GGCC 3 cut(s) 173, 339, 658
BspCNI CTCAG 4 cut(s) 87, 201, 345, 523
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 61, 172
BspQI GCTCTTC 2 cut(s) 105, 113
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 167, 168, 429
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 4 cut(s) 105, 113, 182, 551
BstDEI CTNAG 4 cut(s) 74, 209, 332, 531
BstENI CCTNNNNNAGG 2 cut(s) 609, 663
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 48, 218
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSCI CCNGG 3 cut(s) 166, 167, 653
BstSFI CTRYAG 2 cut(s) 609, 672
BstUI CGCG 1 cut(s) 342
BstZI CGGCCG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 3 cut(s) 173, 339, 658
BtsCI GGATG 1 cut(s) 691
BtsIMutI CAGTG 1 cut(s) 574
CciNI GCGGCCGC 1 cut(s) 337
Cfr13I GGNCC 4 cut(s) 171, 619, 656, 668
Cfr9I CCCGGG 1 cut(s) 167
DdeI CTNAG 4 cut(s) 74, 209, 332, 531
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 105, 113, 182, 551
EarI CTCTTC 4 cut(s) 105, 113, 182, 551
EciI GGCGGA 2 cut(s) 155, 698
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 619, 668
Eco52I CGGCCG 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 137, 663
Eco81I CCTNAGG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 167
EcoNI CCTNNNNNAGG 2 cut(s) 609, 663
EcoO109I RGGNCCY 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaiI YATR 1 cut(s) 680
Fnu4HI GCNGC 3 cut(s) 337, 340, 504
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 3 cut(s) 337, 340, 504
GluI GCNGC 3 cut(s) 337, 340, 504
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 173, 339, 658
HapII CCGG 2 cut(s) 168, 654
HinfI GANTC 2 cut(s) 41, 68
HpaII CCGG 2 cut(s) 168, 654
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 2 cut(s) 77, 210
Hpy188III TCNNGA 1 cut(s) 662
Hpy8I GTNNAC 1 cut(s) 512
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 7 cut(s) 235, 436, 460, 472, 484, 584, 659
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 327, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 4 cut(s) 74, 209, 332, 531
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 2 cut(s) 105, 113
LmnI GCTCC 2 cut(s) 142, 217
LweI GCATC 2 cut(s) 193, 361
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 6 cut(s) 3, 41, 122, 130, 199, 568
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 547
MlyI GAGTC 2 cut(s) 50, 62
MmeI TCCRAC 1 cut(s) 597
MseI TTAA 2 cut(s) 80, 405
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 2 cut(s) 168, 654
MspR9I CCNGG 3 cut(s) 168, 169, 655
Mva1269I GAATGC 1 cut(s) 583
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 333
NciI CCSGG 3 cut(s) 168, 169, 655
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 2 cut(s) 61, 172
NmeAIII GCCGAG 2 cut(s) 176, 199
NotI GCGGCCGC 1 cut(s) 337
PciSI GCTCTTC 2 cut(s) 105, 113
PctI GAATGC 1 cut(s) 583
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 3 cut(s) 338, 341, 505
PleI GAGTC 2 cut(s) 49, 62
PpsI GAGTC 2 cut(s) 49, 62
PpuMI RGGWCCY 1 cut(s) 668
Psp5II RGGWCCY 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 61, 172
PspPI GGNCC 4 cut(s) 171, 619, 656, 668
PspPPI RGGWCCY 1 cut(s) 668
SapI GCTCTTC 2 cut(s) 105, 113
SaqAI TTAA 2 cut(s) 80, 405
SatI GCNGC 3 cut(s) 337, 340, 504
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 4 cut(s) 171, 619, 656, 668
SchI GAGTC 2 cut(s) 50, 62
ScrFI CCNGG 3 cut(s) 168, 169, 655
SduI GDGCHC 1 cut(s) 125
SetI ASST 9 cut(s) 99, 117, 198, 222, 495, 607, 624, 670, 679
SfaNI GCATC 2 cut(s) 193, 361
SfcI CTRYAG 2 cut(s) 609, 672
SinI GGWCC 2 cut(s) 619, 668
SmaI CCCGGG 1 cut(s) 169
SmlI CTYRAG 3 cut(s) 221, 660, 693
SmoI CTYRAG 3 cut(s) 221, 660, 693
Sse9I AATT 1 cut(s) 547
SsiI CCGC 6 cut(s) 140, 336, 340, 347, 503, 683
StyD4I CCNGG 3 cut(s) 166, 167, 653
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 310
TasI AATT 1 cut(s) 547
TauI GCSGC 3 cut(s) 339, 342, 506
Tru1I TTAA 2 cut(s) 80, 405
Tru9I TTAA 2 cut(s) 80, 405
TscAI CASTG 1 cut(s) 574
TspDTI ATGAA 2 cut(s) 65, 123
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 1 cut(s) 574
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 619, 668
XagI CCTNNNNNAGG 2 cut(s) 609, 663
XapI RAATTY 1 cut(s) 547
XmaI CCCGGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.