RLG00000030950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011316
Physical Location & Seq
Forward (+)
859818 .. 860485
668 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030950

Sequence Viewer

Length: 348 bp
ATGATTGATCTCAACGATGTCGTTTTGGAGGAGACGCGGCCGAGGAGGATGCCATTGATAGCGGAGGGCAGAGAAGCAGAAAATACAGCTGTTTGTTGCTCTCAAGCAGTGCTTGAGACCCAAGTGCTGGAGAATGCCTCCAAGTTTGTTTGGGAGTTGATTTTGGATAACAATGGAATGGGAAAGGAAATCAATCAAACGGTTGAAAGGGTGTTATGCAAACTCAGCGGCCTGGAACCGCCGGTCTTTCCTCCTCAAGAAGATGCTGATGATGCCAATGTTAAGGACAATGCCAGAAAAGAGAGCGGAGCAGAAGAGGAAGAGGGAAGAGAAGTGAAGATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

4.39

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 306
AccII CGCG 1 cut(s) 37
AciI CCGC 5 cut(s) 37, 62, 228, 239, 306
AcoI YGGCCR 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 26, 110
AoxI GGCC 2 cut(s) 38, 229
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 26, 110
BisI GCNGC 2 cut(s) 38, 229
BlsI GCNGC 2 cut(s) 39, 230
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 39, 253, 262
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 3 cut(s) 87, 134, 240
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 241
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 238
BseRI GAGGAG 3 cut(s) 44, 58, 243
BseX3I CGGCCG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 40, 231
BsiEI CGRYCG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 26, 110
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 40, 231
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 5 cut(s) 37, 62, 228, 239, 306
BspANI GGCC 2 cut(s) 40, 231
BspCNI CTCAG 1 cut(s) 237
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 3 cut(s) 309, 315, 322
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 26, 110
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 2 cut(s) 225, 272
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 37
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 40, 231
BtsCI GGATG 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 241
CseI GACGC 1 cut(s) 43
CviJI RGCY 3 cut(s) 40, 89, 231
CviKI_1 RGCY 3 cut(s) 40, 89, 231
DdeI CTNAG 1 cut(s) 224
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 309, 315, 322
EarI CTCTTC 3 cut(s) 309, 315, 322
EclXI CGGCCG 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 26
FaiI YATR 2 cut(s) 217, 343
FalI AAGNNNNNCTT 2 cut(s) 96, 128
Fnu4HI GCNGC 2 cut(s) 38, 229
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 38, 229
GluI GCNGC 2 cut(s) 38, 229
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 2 cut(s) 40, 231
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 43
HpaII CCGG 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 272
HpyF3I CTNAG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 5 cut(s) 113, 218, 245, 255, 307
LweI GCATC 3 cut(s) 39, 253, 262
MalI GATC 1 cut(s) 9
MbiI CCGCTC 1 cut(s) 306
MboI GATC 1 cut(s) 7
MboII GAAGA 4 cut(s) 272, 326, 332, 339
MnlI CCTC 9 cut(s) 22, 36, 39, 58, 148, 261, 264, 310, 316
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 89, 228
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 225, 272
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 66
PctI GAATGC 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 39, 230
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 38, 229
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 233
SetI ASST 1 cut(s) 91
SfaNI GCATC 3 cut(s) 39, 253, 262
SmlI CTYRAG 3 cut(s) 102, 113, 255
SmoI CTYRAG 3 cut(s) 102, 113, 255
SsiI CCGC 5 cut(s) 37, 62, 228, 239, 306
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 202
TauI GCSGC 2 cut(s) 40, 231
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 114
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.