Rorug03G0018200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
1441606 .. 1455011
13406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0018200.1

Sequence Viewer

Length: 4431 bp
ATGGAAGAAAGCCATGACGTGGTGGAAGATGTGGAGAGTGGTGGTTCTAGTGGTAGTGATTTGGATTCTTTTATAGATGATTCGGAAGTTGATGAAGTATCGATATCTGGACAAGATGACCGATTGCATCTTGAGGAACCTTTATCTGATAAAGACATTGAGGAGCTGATTGCTGAATTTTTGGAGGTTGAGAGTAAGGCTGCAGAGGCTCAGGAAGCGCTTGAAAAGGAGTCTCTTGCCAAAGTGGAGACTGAAGTTAGAGAGGAGCTGGCACAAACTCTTCACGGGGATGATTTGGAAACAGCTGTTGCAGATGAAATGGCTACTTTAATAGAAGACTGGAAAGCTGAGCTCGATGAGCTTGAGACTGAGAGTGCTCATTTGTTGGAACAACTTGATGGGGCAGGCATTGAGCTACCAAGCCTTTATAAGTGGATTGAAAGTCAGGCTCCTAATGGTTGCTGCACCGAAGCTTGGAAAACACGAATACACTGGGTAGGAAGTCAGGTGAGTGGAGAATGTACCGAGTCAAGAGCTGATGCTGAGAAGTATCTTCAAACGCACAGACCTGTAAGAAGGAAACATGGTAAACTATTGGAGGATGGTGCTAGTGGATTCCTGCAGAAAAAACTAGCTGAAGAGGGGAGCAAGGATGTTGCGACAACTGAGGTTGATTGGTGTTCTCTCAACAAATTATTTTCTGATGGTGCAGCTAAGGATAGCACTTCATTTGGGAGCAAGCACTGGGCTTCTGTTTACTTGGCTAGCACACCGCACCAAGCTGCTGAGATGGGACTTGAATTCCCTGGAGTCAATGAGGTGGAGGAGATTGATGACATTGATGGCAATTCTAGTGATCCATTTGTTGCAGCTGCTGTTGCAAATGAAAAAGAACTGAATCTCTCAGAAGAACAGAAAAGAAGTTATAGGAAGGTTAAGGAAGAAGATGACGCAAACATTGATAGGAAGCTTCAAGTTCATTTGAAACGGAGGAGACATCAAAGGATATGTAAACAGGATGTCAGTCAGAAAGAAGTTTTCCCAATTGATCAAGTGATAGAAAGCAACATGGGCCGGTCTTTCTCAATGCTTGACTCTTCTACTGGTATCTCAAATGGGAAAATTGATGAAGATGGTGAAAACTTTTGTAACACAGATAATGAGGTTGAAGGCCAAAATTTGAAGTCTGCCATAATGAGTAACGGTGCTCCGCCGGCCTCTGATTCCACTGAAGCCAGAGGGTCCAAGCGTCCGAATGAGAGCGAGGAACTAAACATTGATATTAAGAGGAGTCGAACTATAATTATAGACAGTGATGATGAAGCTTCAATGAAAGATACTTTTGACTGCAACATGATAAAATCTGAGGATCATTCCTATGTGAAAGAGAATATCTGCATATCTGGAGATGATGGTCTCACATCACATAGTCTGAATAAGATGCTCCGTTGCACAGCTTGTAATAAATTTTCTGCTGAAGTGCGCTCACATCCACTTATGGAAGTGATTATTTGTGCAAATTGCAAGTGCTTACTAGAAGAAAAGATGCATTTCAAGGATTCTGATTGCTCCATGTGTTATTGTGGGTGGTGTGGGCAAAGCAATGATTTATTGAGTTGTAAATCTTGCACGATGTTATTTTGTACAACTTGTATAAAGAGGAATATTGGAGAGGAATGCTTATCCAAGGCCCAGAACGATGGCTGGCAGTGTTGTTCCTGTTGCCCAAGTCTCCTACAGACATTGAAGTTACAACTTGAGGAAGCAATGGGATCTGGAGATTTGATAGTTTCTAGCTCTGATAGTGATTCAGATGATTCAGATGCAGATATGGATGTTGCTATCAGTACTAAGAGGAAGAGAAAGAAGAAGATACGAAGGATAATTGATGATGCCGAATTGGGAGAAGAGACCAAAAGAAAAATTGCGATTGAAAAGGAACGTCAAGAGCGGTTGAAGTCCTTGCAAGTACAATTTTCTGTTAAATCTAAAATGAAGTGCTCTGCTAGCTATAATGGGAATATATCTGAAGGTGTTAGTGCTGAAGTCATGGGTGATGCATCAGCTGGTTATATAGTGAATGTTATGAGAGAGAAAGGTGAAGAACCCGTGGGAATTCCTCCAAGCCTTTCATCAAAATTGAAGGCTCATCAGATTATGGGCGTAAGGTTTATGTGGGAGAACATTGTACAATCTATCAGAGAAGTGAAGTCTGGGGATAAGGGGCTTGGTTGTATTCTAGCTCACATGATGGGCCTCGGTAAAACGCTTCAGGTTATTACTTTTCTGTATACTGCAATGAGAAGTATCGATTTGGGATTAAAAACTGCACTTATTGTCACTCCTGTTAATGTGCTGCATAATTGGCGGCAAGAGTTCTTGAAGTGGAGACCTTCAGAAGTAAAGCCTCTTCGGATCTTCATGCTAGAAGATGTGTCAAGGGAGAGGAGACTAGAGTTGCTTGCAAAGTGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACTCCGCTTTCAGAAACTTATCCCTTGGAAAGCATGTGAAGGATCGGAACATGGCTAGAGAAATTTGTCATGCCTTACAGGATGGACCTGATATACTTGTTTGTGACGAGGCCCATATTATTAAGAATACCAAGGCTGATGTAACCCAGGCCTTGAAACAAGTTAGATGCCAAAGAAGGATAGCATTAACTGGATCACCTCTTCAGAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGGGAAGGTTTTCTTGGAAGTAGCCACGAGTTTAGAAACCGCTTCCAGAATCCCATAGAGAATGGTCAGCATACTAATTCAACTGTGGAAGATGTGAAAATCATGAATCAGAGATCGCATATTCTGTATGAACAGTTGAAAGGATTTGTTCAAAGAATGGACATGAGCGTGGTGAAGAAGGACTTACCACCTAAAACTGTCTTTGTGATAACTGTGAGGCTTTCGCCCATACAGAAGAAATTATACAAGAGATTCCTTGATGTGCATGGATTCACTACTGACAAGATTTATAATGAAAAGATGAAAAGAGGTTTTTTCGCTGGCTACCAGGCCTTAGCACAGATATGGAACCATCCAGGGATATTGCAATTGAGAAAAGATGACAAAGACTATGTGAGGCATGAAGATGGTGTTGAGAATTTTCTTGCTGATGACAGCTCTAGTGATGAAAACACTGACTATATAGGAGAGAAGCAAGGGAATGTCAATGAAATTTTGCCAGGAAAAAAAGATGATGGTTACTTTCAGAAGGATTGGTGGAATGATCTCATCCATGAAAATAATTATAAGGAGCTTGATTACAGTGGCAAAATGGTATTGCTGCTTGAAATTCTAGCCATGTGTTCTGATGTGGGTGATAAGGCATTGGTATTTAGTCAGAGCATACCAACTCTTGATTTGATAGAACTTTACCTTGCAAGATTACCTCGACATGGGAAGAGATGGAAGTTTTGGAAGAAAGGAAAAGATTGGTTTAGGCTAGATGGAAGAACAGAGAGCTCAGAAAGGCAAAAACTGGTTGAGCGCTTTAATGATCCTGTAAATAAGAGGGTGAAATGCACTCTAATTTCCACCAAAGCTGGATCTTTAGGGATAAATCTTCATGCTGCTAACCGTGTAATCATAGTTGATGGGTCTTGGAATCCAACGTATGATCTTCAGGCTATCTATCGTGCTTGGAGGTATGGCCAAACAAAGCCGGTGTTTGCTTACAGATTGATGGCACATGGAACTATGGAAGAAAAAATTTATAAGCGTCAGGTAACAAAGGAGGGCCTGGCTGCAAGGGTAGTGGATAGACAACAAGTACATAGGACAATATCTAAAGAAGAGATGTTACATCTTTTTGAGTTTGGTGACGATGAAAACCATGATGGGACTGAGCAAGATAACGGAGCTAATCAAAGTATCACTGGTTCAGTCGAAAATTTGCCTAAGCACGGACCACATCTTTCTCATGGAAGTTGTGCTTCTGACAAATTAATGGAAAGATTAATTGGCAAGCATTATCCGAGTTGGATTGCCAATTTTCACTTACATGAGACACTATTGCAAGAGAATGAAGAGGAAAAGCTATCAAAAGAAGAGCAAGACATGGCTTGGGAAGTATACCGGAAATCATTTGAATGGGAGGAAGTGAAGCAAGTTCCTGTCAGTGAATCTGCAGTTGACCAAAAGCCAGAGCCAGCTGCATCAACTGTGAAGTCGCCTGCAATAGAGATGAGCAGCCTTGCAGAATCCAAGGTGAGGGATACTTATGTGCAGCGGAAATGCACTAAGCTTTCACATGTGCTGACCCTTAGAAGTCAAGGTACAAAATCTGGTTGCACCACTGTATGTGGGGAATGTGCTCGAGAGATAAGCTGGGAGGGTTTGCATCAAGAAGGCAAGTCTGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1476

Amino Acids

166.8

Weight (kDa)

5.45

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 717 - 1036 4.8e-53 SNF2-related domain
ResIII PF04851 726 - 901 1.7e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 1113 - 1239 5.4e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011316)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 429, 3039, 3315, 3780
AccB7I CCANNNNNTGG 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 1951
AccI GTMKAC 2 cut(s) 2291, 4137
AciI CCGC 7 cut(s) 773, 1211, 1951, 2368, 2508, 2788, 4294
AclWI GGATC 8 cut(s) 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619
AcoI YGGCCR 1 cut(s) 3715
AfaI GTAC 7 cut(s) 523, 1645, 1849, 1971, 2190, 3837, 4342
AfeI AGCGCT 2 cut(s) 219, 3554
AfiI CCNNNNNNNGG 5 cut(s) 19, 474, 3461, 3968, 4275
AflIII ACRYGT 1 cut(s) 4315
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
AjuI GAANNNNNNNTTGG 4 cut(s) 2745, 2777, 4008, 4040
Alw21I GWGCWC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
AlwI GGATC 8 cut(s) 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 4380
Aor51HI AGCGCT 2 cut(s) 219, 3554
AseI ATTAAT 2 cut(s) 4010, 4022
Asp700I GAANNNNTTC 1 cut(s) 2757
AspLEI GCGC 3 cut(s) 220, 1485, 3555
AspS9I GGNCC 8 cut(s) 1072, 1242, 1690, 2254, 2588, 2614, 3802, 3971
AsuNHI GCTAGC 2 cut(s) 764, 2006
AvaI CYCGRG 1 cut(s) 4380
AvaII GGWCC 3 cut(s) 1242, 2588, 3971
BaeI ACNNNNGTAYC 2 cut(s) 4272, 4305
BalI TGGCCA 1 cut(s) 3717
BanII GRGCYC 2 cut(s) 354, 3530
BarI GAAGNNNNNNTAC 8 cut(s) 2394, 2426, 2975, 3007, 3849, 3881, 4324, 4356
BauI CACGAG 1 cut(s) 2774
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
BciT130I CCWGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
BciVI GTATCC 1 cut(s) 4273
BclI TGATCA 1 cut(s) 1048
BfmI CTRYAG 4 cut(s) 201, 620, 1736, 4191
BfoI RGCGCY 2 cut(s) 221, 3556
BfuI GTATCC 1 cut(s) 4273
BlpI GCTNAGC 1 cut(s) 348
BmcAI AGTACT 1 cut(s) 1849
Bme1390I CCNGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
Bme18I GGWCC 3 cut(s) 1242, 2588, 3971
BmeT110I CYCGRG 1 cut(s) 4380
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 8 cut(s) 1072, 1242, 1690, 2254, 2588, 2614, 3802, 3971
BmiI GGNNCC 4 cut(s) 138, 450, 1243, 3098
BmrFI CCNGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
BmrI ACTGGG 2 cut(s) 502, 754
BmtI GCTAGC 2 cut(s) 768, 2010
BmuI ACTGGG 2 cut(s) 502, 754
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 3 cut(s) 828, 1425, 1797
Bpu10I CCTNAGC 5 cut(s) 210, 714, 2478, 3082, 3963
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 3 cut(s) 152, 383, 1778
Bsa29I ATCGAT 2 cut(s) 101, 2310
BsaI GGTCTC 3 cut(s) 1421, 1904, 2383
BsaJI CCNNGG 9 cut(s) 805, 1686, 2109, 2257, 2527, 2634, 2649, 3104, 4269
BsaWI WCCGGW 1 cut(s) 4140
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 474, 3461, 3968, 4275
Bse118I RCCGGY 3 cut(s) 1074, 1213, 3727
Bse1I ACTGG 7 cut(s) 344, 497, 749, 1108, 2698, 3549, 3946
Bse3DI GCAATG 3 cut(s) 1609, 1773, 2304
BseBI CCWGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
BseCI ATCGAT 2 cut(s) 101, 2310
BseDI CCNNGG 9 cut(s) 805, 1686, 2109, 2257, 2527, 2634, 2649, 3104, 4269
BseGI GGATG 9 cut(s) 295, 607, 658, 1024, 1489, 1840, 2590, 3100, 3297
BseLI CCNNNNNNNGG 5 cut(s) 19, 474, 3461, 3968, 4275
BseMI GCAATG 3 cut(s) 1609, 1773, 2304
BseNI ACTGG 7 cut(s) 344, 497, 749, 1108, 2698, 3549, 3946
BseRI GAGGAG 6 cut(s) 176, 278, 839, 1006, 1303, 2461
BseYI CCCAGC 1 cut(s) 4392
BsgI GTGCAG 4 cut(s) 448, 729, 2313, 4310
BshVI ATCGAT 2 cut(s) 101, 2310
BsiHKAI GWGCWC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
BsiHKCI CYCGRG 1 cut(s) 4380
BsiSI CCGG 4 cut(s) 1075, 1214, 3728, 4141
BslFI GGGAC 2 cut(s) 807, 3919
BslI CCNNNNNNNGG 5 cut(s) 19, 474, 3461, 3968, 4275
BsmFI GGGAC 2 cut(s) 807, 3919
BsmI GAATGC 1 cut(s) 1682
Bso31I GGTCTC 3 cut(s) 1421, 1904, 2383
BsoBI CYCGRG 1 cut(s) 4380
Bsp1286I GDGCHC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
Bsp1407I TGTACA 2 cut(s) 1643, 2188
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 7 cut(s) 773, 1211, 1951, 2368, 2508, 2788, 4294
BspDI ATCGAT 2 cut(s) 101, 2310
BspHI TCATGA 1 cut(s) 2850
BspLI GGNNCC 4 cut(s) 138, 450, 1243, 3098
BspMAI CTGCAG 3 cut(s) 205, 624, 4195
BspOI GCTAGC 2 cut(s) 768, 2010
BspPI GGATC 8 cut(s) 851, 1377, 1780, 2423, 2553, 2704, 3557, 3619
BspQI GCTCTTC 1 cut(s) 4107
BspTNI GGTCTC 3 cut(s) 1421, 1904, 2383
BsrBI CCGCTC 1 cut(s) 1951
BsrDI GCAATG 3 cut(s) 1609, 1773, 2304
BsrFI RCCGGY 3 cut(s) 1074, 1213, 3727
BsrGI TGTACA 2 cut(s) 1643, 2188
BsrI ACTGG 7 cut(s) 344, 497, 749, 1108, 2698, 3549, 3946
BssAI RCCGGY 3 cut(s) 1074, 1213, 3727
BssECI CCNNGG 9 cut(s) 805, 1686, 2109, 2257, 2527, 2634, 2649, 3104, 4269
BssNAI GTATAC 2 cut(s) 2292, 4138
BssSI CACGAG 1 cut(s) 2774
BssT1I CCWWGG 4 cut(s) 1686, 2527, 2634, 4269
Bst1107I GTATAC 2 cut(s) 2292, 4138
Bst2BI CACGAG 1 cut(s) 2774
Bst2UI CCWGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
BstAUI TGTACA 2 cut(s) 1643, 2188
BstDSI CCRYGG 1 cut(s) 2109
BstF5I GGATG 9 cut(s) 295, 607, 658, 1024, 1489, 1840, 2590, 3100, 3297
BstH2I RGCGCY 2 cut(s) 221, 3556
BstHHI GCGC 3 cut(s) 220, 1485, 3555
BstMWI GCNNNNNNNGC 8 cut(s) 206, 215, 358, 878, 1071, 1214, 2007, 2365
BstNI CCWGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
BstNSI RCATGY 2 cut(s) 2540, 4319
BstSCI CCNGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
BstSFI CTRYAG 4 cut(s) 201, 620, 1736, 4191
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 3 cut(s) 1772, 2415, 3611
BstXI CCANNNNNNTGG 1 cut(s) 1700
BstYI RGATCY 3 cut(s) 1772, 2415, 3611
BstZ17I GTATAC 2 cut(s) 2292, 4138
Bsu15I ATCGAT 2 cut(s) 101, 2310
BsuI GTATCC 1 cut(s) 4273
BsuTUI ATCGAT 2 cut(s) 101, 2310
BtgI CCRYGG 1 cut(s) 2109
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 9 cut(s) 295, 607, 658, 1024, 1489, 1840, 2590, 3100, 3297
BtsI GCAGTG 1 cut(s) 1715
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 1 cut(s) 2850
CfoI GCGC 3 cut(s) 220, 1485, 3555
Cfr10I RCCGGY 3 cut(s) 1074, 1213, 3727
Cfr13I GGNCC 8 cut(s) 1072, 1242, 1690, 2254, 2588, 2614, 3802, 3971
ClaI ATCGAT 2 cut(s) 101, 2310
CseI GACGC 3 cut(s) 959, 1238, 3773
Csp6I GTAC 7 cut(s) 522, 1644, 1848, 1970, 2189, 3836, 4341
CspCI CAANNNNNGTGG 2 cut(s) 3801, 3836
CviQI GTAC 7 cut(s) 522, 1644, 1848, 1970, 2189, 3836, 4341
EaeI YGGCCR 1 cut(s) 3715
EciI GGCGGA 1 cut(s) 1200
Ecl136II GAGCTC 2 cut(s) 352, 3528
Eco130I CCWWGG 4 cut(s) 1686, 2527, 2634, 4269
Eco147I AGGCCT 2 cut(s) 2654, 3080
Eco24I GRGCYC 2 cut(s) 354, 3530
Eco31I GGTCTC 3 cut(s) 1421, 1904, 2383
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 3 cut(s) 1242, 2588, 3971
Eco47III AGCGCT 2 cut(s) 219, 3554
Eco53kI GAGCTC 2 cut(s) 352, 3528
Eco88I CYCGRG 1 cut(s) 4380
EcoICRI GAGCTC 2 cut(s) 352, 3528
EcoO109I RGGNCCY 1 cut(s) 3802
EcoRI GAATTC 2 cut(s) 800, 2115
EcoRII CCWGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 4 cut(s) 1686, 2527, 2634, 4269
EcoT22I ATGCAT 2 cut(s) 1551, 2062
EcoT38I GRGCYC 2 cut(s) 354, 3530
ErhI CCWWGG 4 cut(s) 1686, 2527, 2634, 4269
FalI AAGNNNNNCTT 6 cut(s) 2745, 2777, 2915, 2947, 3982, 4014
FaqI GGGAC 2 cut(s) 807, 3919
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 2 cut(s) 2291, 4137
FokI GGATG 9 cut(s) 302, 614, 665, 1031, 1476, 1847, 2597, 3087, 3284
FriOI GRGCYC 2 cut(s) 354, 3530
GlaI GCGC 3 cut(s) 219, 1484, 3554
GsaI CCCAGC 1 cut(s) 4396
GsuI CTGGAG 3 cut(s) 828, 1425, 1797
HaeII RGCGCY 2 cut(s) 221, 3556
HapII CCGG 4 cut(s) 1075, 1214, 3728, 4141
HgaI GACGC 3 cut(s) 959, 1238, 3773
HhaI GCGC 3 cut(s) 220, 1485, 3555
Hin6I GCGC 3 cut(s) 218, 1483, 3553
HinP1I GCGC 3 cut(s) 218, 1483, 3553
HincII GTYRAC 1 cut(s) 4198
HindII GTYRAC 1 cut(s) 4198
HindIII AAGCTT 4 cut(s) 471, 968, 1323, 4307
HpaII CCGG 4 cut(s) 1075, 1214, 3728, 4141
Hpy166II GTNNAC 6 cut(s) 590, 757, 1013, 2292, 4138, 4198
Hpy8I GTNNAC 6 cut(s) 590, 757, 1013, 2292, 4138, 4198
HpyCH4IV ACGT 3 cut(s) 18, 1942, 3677
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 215, 358, 878, 1071, 1214, 2007, 2365
HpySE526I ACGT 3 cut(s) 18, 1942, 3677
HspAI GCGC 3 cut(s) 218, 1483, 3553
KroI GCCGGC 1 cut(s) 1213
KroNI GCCGGC 1 cut(s) 1215
Ksp22I TGATCA 1 cut(s) 1048
LguI GCTCTTC 1 cut(s) 4107
MaeII ACGT 3 cut(s) 18, 1942, 3677
MbiI CCGCTC 1 cut(s) 1951
MfeI CAATTG 2 cut(s) 1044, 3116
MflI RGATCY 3 cut(s) 1772, 2415, 3611
MhlI GDGCHC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
MlsI TGGCCA 1 cut(s) 3717
MluNI TGGCCA 1 cut(s) 3717
MlyI GAGTC 5 cut(s) 239, 536, 819, 1088, 1300
MmeI TCCRAC 3 cut(s) 366, 3698, 4025
Mox20I TGGCCA 1 cut(s) 3717
Mph1103I ATGCAT 2 cut(s) 1551, 2062
MroNI GCCGGC 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 2757
MscI TGGCCA 1 cut(s) 3717
MslI CAYNNNNRTG 7 cut(s) 288, 1377, 2915, 3091, 3153, 4065, 4153
Msp20I TGGCCA 1 cut(s) 3717
MspA1I CMGCKG 5 cut(s) 305, 872, 2066, 4217, 4294
MspI CCGG 4 cut(s) 1075, 1214, 3728, 4141
MspR9I CCNGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
MunI CAATTG 2 cut(s) 1044, 3116
Mva1269I GAATGC 1 cut(s) 1682
MvaI CCWGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
MwoI GCNNNNNNNGC 8 cut(s) 206, 215, 358, 878, 1071, 1214, 2007, 2365
NaeI GCCGGC 1 cut(s) 1215
NgoMIV GCCGGC 1 cut(s) 1213
NheI GCTAGC 2 cut(s) 764, 2006
NlaIV GGNNCC 4 cut(s) 138, 450, 1243, 3098
NmuCI GTSAC 3 cut(s) 2338, 2606, 3884
NsiI ATGCAT 2 cut(s) 1551, 2062
NspI RCATGY 2 cut(s) 2540, 4319
PaeR7I CTCGAG 1 cut(s) 4380
PagI TCATGA 1 cut(s) 2850
PceI AGGCCT 2 cut(s) 2654, 3080
PciI ACATGT 1 cut(s) 4315
PciSI GCTCTTC 1 cut(s) 4107
PctI GAATGC 1 cut(s) 1682
PdiI GCCGGC 1 cut(s) 1215
PdmI GAANNNNTTC 1 cut(s) 2757
PflMI CCANNNNNTGG 1 cut(s) 19
PleI GAGTC 5 cut(s) 238, 535, 818, 1088, 1299
PpsI GAGTC 5 cut(s) 238, 535, 818, 1088, 1299
PscI ACATGT 1 cut(s) 4315
PshBI ATTAAT 2 cut(s) 4010, 4022
PsiI TTATAA 4 cut(s) 429, 3039, 3315, 3780
Psp124BI GAGCTC 2 cut(s) 354, 3530
Psp6I CCWGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
PspFI CCCAGC 1 cut(s) 4392
PspGI CCWGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
PspN4I GGNNCC 4 cut(s) 138, 450, 1243, 3098
PspPI GGNCC 8 cut(s) 1072, 1242, 1690, 2254, 2588, 2614, 3802, 3971
PsrI GAACNNNNNNTAC 2 cut(s) 3928, 3960
PstI CTGCAG 3 cut(s) 205, 624, 4195
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 3 cut(s) 1772, 2415, 3611
PvuII CAGCTG 4 cut(s) 305, 872, 2066, 4217
RsaI GTAC 7 cut(s) 523, 1645, 1849, 1971, 2190, 3837, 4342
RsaNI GTAC 7 cut(s) 522, 1644, 1848, 1970, 2189, 3836, 4341
RseI CAYNNNNRTG 7 cut(s) 288, 1377, 2915, 3091, 3153, 4065, 4153
SacI GAGCTC 2 cut(s) 354, 3530
SapI GCTCTTC 1 cut(s) 4107
Sau96I GGNCC 8 cut(s) 1072, 1242, 1690, 2254, 2588, 2614, 3802, 3971
ScaI AGTACT 1 cut(s) 1849
SchI GAGTC 5 cut(s) 239, 536, 819, 1088, 1300
ScrFI CCNGG 6 cut(s) 807, 2651, 3077, 3105, 3249, 3806
SduI GDGCHC 6 cut(s) 354, 379, 1210, 2003, 3530, 4381
SfcI CTRYAG 4 cut(s) 201, 620, 1736, 4191
Sfr274I CTCGAG 1 cut(s) 4380
SinI GGWCC 3 cut(s) 1242, 2588, 3971
SlaI CTCGAG 1 cut(s) 4380
SmiMI CAYNNNNRTG 7 cut(s) 288, 1377, 2915, 3091, 3153, 4065, 4153
SmlI CTYRAG 4 cut(s) 131, 362, 1757, 4380
SmoI CTYRAG 4 cut(s) 131, 362, 1757, 4380
SseBI AGGCCT 2 cut(s) 2654, 3080
SsiI CCGC 7 cut(s) 773, 1211, 1951, 2368, 2508, 2788, 4294
SspI AATATT 2 cut(s) 1666, 2726
SstI GAGCTC 2 cut(s) 354, 3530
StuI AGGCCT 2 cut(s) 2654, 3080
StyD4I CCNGG 6 cut(s) 805, 2649, 3075, 3103, 3247, 3804
StyI CCWWGG 4 cut(s) 1686, 2527, 2634, 4269
TaiI ACGT 3 cut(s) 21, 1945, 3680
TaqI TCGA 7 cut(s) 101, 354, 1294, 2310, 3457, 3951, 4381
TaqII GACCGA 1 cut(s) 135
TatI WGTACW 5 cut(s) 1643, 1847, 1969, 2188, 3835
TauI GCSGC 1 cut(s) 2371
TseFI GTSAC 3 cut(s) 2338, 2606, 3884
Tsp45I GTSAC 3 cut(s) 2338, 2606, 3884
TspGWI ACGGA 4 cut(s) 1003, 1436, 3936, 3984
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 3 cut(s) 1242, 2588, 3971
VspI ATTAAT 2 cut(s) 4010, 4022
XceI RCATGY 2 cut(s) 2540, 4319
XhoI CTCGAG 1 cut(s) 4380
XmiI GTMKAC 2 cut(s) 2291, 4137
XmnI GAANNNNTTC 1 cut(s) 2757
ZrmI AGTACT 1 cut(s) 1849
Zsp2I ATGCAT 2 cut(s) 1551, 2062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.