Rorug07G0327900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011316
Physical Location & Seq
Forward (+)
35876063 .. 35883625
7563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327900.1

Sequence Viewer

Length: 3105 bp
ATGAGAGTGAGTTCGACGACGGGCAATGAGGGAGGAGCAGGAGCGGCGGCGGCGGCTTCTTCTAGGGACGCGGAAGGGCTGTTCCGCACCAAAGGCATCACCGAGATTCGCAATGTCGAATCGGCGACGCGGAAGCAGATCCAGGCCAAGAAGGAGGAGCTCCGTCAACTCGTCGGCACTCGCTACCGCGACCTCATCGACTCCGCCGACTCCATCGTCCTCATGAAGCGCTCCGCCCACTCCATCTCCCGCAACCTCTCCTCCGTCCACCACGCCGTCATCCACTCCCTCTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCCAATTCCGATTCCAAGTCCTCCGTCCGCATCTACGGAATCGCCTGCCGGGTCAAGTACCTGGTCGACACCCCCGAGAACATCTGGGGCTGCCTCGACGAGTCCATGTTCCTCGAGTCCGCCGCCCGCTACGTCCGCGCCAGCCACGTCCACTTCACCCTCACCACCCTCCACAAGCCCTTCCTCTCTCACTTTCCTCTCCTCCAGCACCAATGGCAGATCGTCGACAGCTTCAAGTCCCAGATCTCCCAGCGCGCCCGCGACCGCCTCTCCGATCACCGCCAATCCAACAACCTCCCCGTCTCCTCCTACGCCGACGCTTTGGCTGCCGTCGCTCTCATCGACGACCTCCCTCCCCAACACGTCCTCTCCCTCTTCCTCGACACCCGCAAGGCCTGGGTTTCCCACATTTTGAATACTTCCACTTCCTCAGTTGAATGCTCCCCCCACGTTGTTTCGGTCCTTTGCGAGGCCCTCAGGGTTATTCAGGTCACTGTGGGCCAGGTTGGGGAATTGTTTCTCCGGGTTTTCAACGACATGCCTCTGTTTTACAAGGTGATCCTGGGTTGCCCTCCTGCATCTCAACTCTTTGGCGGCATTCCCAACCCGGATGAGGAGGTCAAGCTTTGGAATTCCTTCAGGGACAAGTTGGAGTCTGCCATGGTAATGCTGGACAAAGACTATATTGCGAAAGCTTCTTCTTCATGGCTTGCCGACTGTGGAGCTCAGATGGTGGATAAGATCAATGGCAGGTATCTCATTGATGCTATTGGCAGCGGCAAAGAGCTTGCCTCCGCTGAGAGATTGATAAGGGAGACTATGAACAGCAAAGAGGTCTTGGAAGGAAGCTTGGAGTGGCTTAAGAAAGTTTTCGGATCCCAAATTGACCTGCCATGGAGTAGAATGAGTGAACTTGTTCTGGGAGATGATTCAGACCTCTGGGACAGTATCTTTGAAAGTGGATTTGTCGGGAGGATGAAGGTGATTGTGGACTCCAGGTTTGAGAAGCTCAAGACGGCTGCCAATATTAATGATGGTGAGGCCATTGAATTCCTAGGTGCAGGTGGTGGAGTTTGGTTTATAGAATCCAAATCCAATAGTAAGAAGGCTACTGCTCTGCCATGTGAAGAGAACTGTCTCAATTTCTATTTTGGTCCTCAAGTTAGTGATATTAGGGATGCGGTGGATAGCAGCTGTCAGGATGTGCTTGATGACCTCCTCTCTTTTCTGGAGTCTCCAAAGGCAGCTGTCAGATTAAAGAATCTGGCACCCTATCTACAAGACAAGTGTTTCCAAACTATATCCATCATATTGGAGCAACTAAGTAGTGAGCTTGATAATTTGGAAAAGGGCAGCAACAAGCAAAAGCTGCTAACCGTTGAAAGGGCTCTATTCATTGGGAGACTCTTGTTTGCATTGCAGAACCACTCCAAACACATTCCCTTAGTACTTGGCCCTCCAAGGTCTTGGGTGAATGAAAGTGAGTCTGCAGTTTTCGACAAGTTACCATCCTTATTGAGACAGTCTAGAGCCCCCACCGATTCTCATGTGCTTGATAGCCCCTTGGGCTCTAAAAGACACACCTCATCTGCTACTGCTGCACTGCTTGGAGCCAGCCAAAGTGCAAGCCCTAAACTTGAAGAGCTTAATGTGACTATGCGAAATCTCCGCATTAGAGCGCACACTTTCTGGATGACTTGGCTATCCGATGAGCTCTCAGTTATACTTTCCCATGATCTAGAAAAGGACGATGCTTTGTCATCCTCAACTCCCCTGAGGGGTTGGGAAGAGACAGTAGTTAGGCAAGAGCAGTCTGATGATAACCAATCAGAGATGAAAATATGGCTCCCATCCATGCCGTCTCTCTATGTTGTCTCATTTCTATTCCGTATATGTGAAGAAGTTCATCGAATAGGAGGTCATGTCCTTGACAAAATAATTCTGCAAAAATTTGCATTACAACTGTTGGAAAAGGTCATTGGCATTTATGGCGACTTCCTTTCTAATCTAGATGCTGGTGGGTCTCAAGTGTCAGAAAAAGGAGTTTTGCAGATTTTGTTAGACTTGAGATTTGTTTTTGATGTCCTCTCTGGGGGTGATTCTAATTTGAATGAGGAGCGGAAGACAAAATGTACTTTCAGAAGGAAGCAGGACCAAAGCCGTATGAAGTCAGCTACTAGAGAGCGTTTTGATGGGTTGATACATCATTTTTCACAAAGATTGGATCCCATAGACTGGCTTACGTACGAGCCGTATCTCTGGGAAAATGAGAAGCAGTCCTACCTCCGGCATGCCGTCCTTTTTGGATTCTTTGTGCAACTTAATCGCATGTACACAGACACTGTTCAGAAACTTCCTACTAATTCAGAGTCCAATATCATGAGATGCTCTTCAGTTCCTCGCTTTAAGTACCTTCCAATCAGTGCCCCAGCATTGTCTTCAAGAGGGACAGCAGCTAAGGCATCCATTCAAACATCTTCCGATGATATTTCTTCAAGAAGTAGCTGGAAAGCTTATACAAATGGAGAGCTGTCCAGAAGTATTGATTTGGATGATAACTCAAGTTTTGGGGTTGCAGTACCAATCTTAAAATCTTTCATGCAGGCTGGAAGTAGGTTTGGAGAGAGCACATTAAAACTGGGATCCATGCTAACAGATGGGCAAGTGGGCATATTCAAGGATAGATCAGCCGCCGCCATGTCGACATTTGGTGACATTCTACCTGCCCACGCTGCAGGTCTCCTTTCATCATTCACAGCTTCCAGATCAGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1034

Amino Acids

114.85

Weight (kDa)

6.37

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS51_Exo84_N PF08700 21 - 92 1.1e-13 Vps51/EXO84/COG1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1379
AasI GACNNNNNNGTC 1 cut(s) 215
Acc36I ACCTGC 5 cut(s) 1068, 1224, 1379, 3053, 3058
AccB1I GGYRCC 1 cut(s) 1594
AccB7I CCANNNNNTGG 1 cut(s) 2562
AccBSI CCGCTC 2 cut(s) 44, 2446
AccI GTMKAC 3 cut(s) 393, 552, 3029
AccII CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
AclWI GGATC 8 cut(s) 133, 880, 1197, 1210, 2546, 2559, 2964, 2977
AcsI RAATTY 3 cut(s) 958, 1376, 2276
AcuI CTGAAG 2 cut(s) 949, 2703
AfaI GTAC 7 cut(s) 386, 1776, 2461, 2573, 2660, 2738, 2907
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 8 cut(s) 796, 835, 940, 1710, 2105, 2419, 2562, 2613
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 1 cut(s) 688
AjiI CACGTC 2 cut(s) 475, 691
AjnI CCWGG 6 cut(s) 141, 387, 722, 828, 888, 1322
AjuI GAANNNNNNNTTGG 2 cut(s) 2289, 2321
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
Alw21I GWGCWC 4 cut(s) 162, 1054, 2043, 2957
AlwI GGATC 8 cut(s) 133, 880, 1197, 1210, 2546, 2559, 2964, 2977
AlwNI CAGNNNCTG 1 cut(s) 2669
Ama87I CYCGRG 2 cut(s) 401, 440
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 6 cut(s) 144, 720, 798, 826, 1368, 1780
ApoI RAATTY 3 cut(s) 958, 1376, 2276
ArsI GACNNNNNNTTYG 8 cut(s) 1262, 1294, 1310, 1342, 2230, 2262, 2381, 2413
AseI ATTAAT 1 cut(s) 1356
Asp700I GAANNNNTTC 5 cut(s) 843, 962, 1196, 1242, 2229
AspA2I CCTAGG 1 cut(s) 1381
AspLEI GCGC 5 cut(s) 231, 467, 582, 584, 2008
AspS9I GGNCC 6 cut(s) 787, 799, 826, 1481, 1781, 2479
AsuC2I CCSGG 3 cut(s) 377, 851, 935
AvaI CYCGRG 2 cut(s) 401, 440
AvaII GGWCC 3 cut(s) 787, 1481, 2479
AvrII CCTAGG 1 cut(s) 1381
AxyI CCTNAGG 2 cut(s) 803, 2102
BaeGI GKGCMC 1 cut(s) 2755
BamHI GGATCC 3 cut(s) 1202, 2551, 2969
BanI GGYRCC 1 cut(s) 1594
BanII GRGCYC 6 cut(s) 162, 1054, 1717, 1861, 1898, 2043
BarI GAAGNNNNNNTAC 2 cut(s) 2591, 2623
BbsI GAAGAC 2 cut(s) 2456, 2757
Bbv12I GWGCWC 4 cut(s) 162, 1054, 2043, 2957
BccI CCATC 9 cut(s) 221, 251, 1051, 1355, 1640, 1843, 2185, 2513, 2978
BceAI ACGGC 7 cut(s) 260, 641, 1359, 2170, 2472, 2563, 2606
BcgI CGANNNNNNTGC 2 cut(s) 2633, 2667
BciT130I CCWGG 6 cut(s) 143, 389, 724, 830, 890, 1324
BcnI CCSGG 3 cut(s) 377, 851, 935
BfaI CTAG 6 cut(s) 63, 1382, 1854, 2066, 2336, 2505
BfmI CTRYAG 2 cut(s) 1815, 3060
BfoI RGCGCY 1 cut(s) 232
BfrI CTTAAG 1 cut(s) 1187
BfuAI ACCTGC 5 cut(s) 1068, 1224, 1379, 3053, 3058
BglI GCCNNNNNGGC 1 cut(s) 1893
BglII AGATCT 1 cut(s) 570
BlnI CCTAGG 1 cut(s) 1381
BmcAI AGTACT 1 cut(s) 1776
Bme1390I CCNGG 9 cut(s) 143, 377, 389, 724, 830, 851, 890, 935, 1324
Bme18I GGWCC 3 cut(s) 787, 1481, 2479
BmeT110I CYCGRG 2 cut(s) 401, 440
BmgBI CACGTC 2 cut(s) 475, 691
BmgT120I GGNCC 6 cut(s) 787, 799, 826, 1481, 1781, 2479
BmiI GGNNCC 6 cut(s) 1204, 1596, 1939, 2174, 2553, 2971
BmrFI CCNGG 9 cut(s) 143, 377, 389, 724, 830, 851, 890, 935, 1324
BmrI ACTGGG 1 cut(s) 2975
BmsI GCATC 9 cut(s) 105, 366, 914, 1081, 1495, 2068, 2329, 2702, 2798
BmuI ACTGGG 1 cut(s) 2975
BpiI GAAGAC 2 cut(s) 2456, 2757
BplI GAGNNNNNCTC 2 cut(s) 1103, 1135
BpmI CTGGAG 3 cut(s) 515, 1306, 1577
Bpu10I CCTNAGC 1 cut(s) 2784
BpuEI CTTGAG 5 cut(s) 1322, 1470, 2337, 2413, 2872
BpuMI CCSGG 3 cut(s) 377, 851, 935
BsaAI YACGTR 1 cut(s) 2571
BsaI GGTCTC 2 cut(s) 2355, 3071
BsaJI CCNNGG 7 cut(s) 723, 889, 987, 1220, 1381, 1787, 1890
Bsc4I CCNNNNNNNGG 8 cut(s) 796, 835, 940, 1710, 2105, 2419, 2562, 2613
Bse1I ACTGG 2 cut(s) 2567, 2970
Bse21I CCTNAGG 2 cut(s) 803, 2102
Bse3DI GCAATG 3 cut(s) 31, 118, 1742
BseBI CCWGG 6 cut(s) 143, 389, 724, 830, 890, 1324
BseDI CCNNGG 7 cut(s) 723, 889, 987, 1220, 1381, 1787, 1890
BseLI CCNNNNNNNGG 8 cut(s) 796, 835, 940, 1710, 2105, 2419, 2562, 2613
BseMI GCAATG 3 cut(s) 31, 118, 1742
BseMII CTCAG 6 cut(s) 771, 817, 1067, 1116, 2058, 2093
BseNI ACTGG 2 cut(s) 2567, 2970
BsePI GCGCGC 1 cut(s) 580
BseRI GAGGAG 8 cut(s) 48, 170, 250, 518, 622, 956, 1535, 2456
BseSI GKGCMC 1 cut(s) 2755
BseYI CCCAGC 2 cut(s) 576, 2755
BsgI GTGCAG 2 cut(s) 1407, 1911
Bsh1236I CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 6 cut(s) 146, 722, 800, 828, 1370, 1782
BshNI GGYRCC 1 cut(s) 1594
BsiEI CGRYCG 1 cut(s) 592
BsiHKAI GWGCWC 4 cut(s) 162, 1054, 2043, 2957
BsiHKCI CYCGRG 2 cut(s) 401, 440
BsiSI CCGG 4 cut(s) 376, 850, 935, 2614
BsiWI CGTACG 1 cut(s) 2571
BslFI GGGAC 5 cut(s) 80, 550, 983, 1283, 2788
BslI CCNNNNNNNGG 8 cut(s) 796, 835, 940, 1710, 2105, 2419, 2562, 2613
BsmBI CGTCTC 2 cut(s) 634, 2193
BsmFI GGGAC 5 cut(s) 80, 550, 983, 1283, 2788
BsmI GAATGC 2 cut(s) 770, 924
BsnI GGCC 6 cut(s) 146, 722, 800, 828, 1370, 1782
Bso31I GGTCTC 2 cut(s) 2355, 3071
BsoBI CYCGRG 2 cut(s) 401, 440
Bsp1286I GDGCHC 8 cut(s) 162, 1054, 1717, 1861, 1898, 2043, 2755, 2957
Bsp1407I TGTACA 1 cut(s) 2658
Bsp19I CCATGG 2 cut(s) 987, 1220
BspANI GGCC 6 cut(s) 146, 722, 800, 828, 1370, 1782
BspCNI CTCAG 6 cut(s) 770, 816, 1066, 1117, 2057, 2094
BspFNI CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
BspHI TCATGA 2 cut(s) 222, 2706
BspLI GGNNCC 6 cut(s) 1204, 1596, 1939, 2174, 2553, 2971
BspMAI CTGCAG 2 cut(s) 1819, 3064
BspMI ACCTGC 5 cut(s) 1068, 1224, 1379, 3053, 3058
BspPI GGATC 8 cut(s) 133, 880, 1197, 1210, 2546, 2559, 2964, 2977
BspQI GCTCTTC 2 cut(s) 1962, 2722
BspT107I GGYRCC 1 cut(s) 1594
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 2 cut(s) 2355, 3071
BsrBI CCGCTC 2 cut(s) 44, 2446
BsrDI GCAATG 3 cut(s) 31, 118, 1742
BsrGI TGTACA 1 cut(s) 2658
BsrI ACTGG 2 cut(s) 2567, 2970
BssECI CCNNGG 7 cut(s) 723, 889, 987, 1220, 1381, 1787, 1890
BssHII GCGCGC 1 cut(s) 580
BssT1I CCWWGG 5 cut(s) 987, 1220, 1381, 1787, 1890
Bst2UI CCWGG 6 cut(s) 143, 389, 724, 830, 890, 1324
Bst4CI ACNGT 9 cut(s) 823, 1046, 1274, 1463, 1705, 1851, 2122, 2292, 2671
Bst6I CTCTTC 5 cut(s) 707, 1449, 1962, 2109, 2722
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 1696
BstAUI TGTACA 1 cut(s) 2658
BstBAI YACGTR 1 cut(s) 2571
BstDEI CTNAG 9 cut(s) 757, 803, 1053, 1125, 1649, 1771, 2044, 2102, 2784
BstDSI CCRYGG 2 cut(s) 987, 1220
BstENI CCTNNNNNAGG 1 cut(s) 794
BstFNI CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 5 cut(s) 231, 467, 582, 584, 2008
BstMCI CGRYCG 1 cut(s) 592
BstNI CCWGG 6 cut(s) 143, 389, 724, 830, 890, 1324
BstNSI RCATGY 3 cut(s) 868, 2621, 2659
BstSCI CCNGG 9 cut(s) 141, 375, 387, 722, 828, 849, 888, 933, 1322
BstSFI CTRYAG 2 cut(s) 1815, 3060
BstSLI GKGCMC 1 cut(s) 2755
BstSNI TACGTA 1 cut(s) 2571
BstUI CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
BstV2I GAAGAC 2 cut(s) 2456, 2757
BstX2I RGATCY 5 cut(s) 138, 570, 1202, 2551, 2969
BstXI CCANNNNNNTGG 2 cut(s) 1639, 1794
BstYI RGATCY 5 cut(s) 138, 570, 1202, 2551, 2969
Bsu36I CCTNAGG 2 cut(s) 803, 2102
BsuRI GGCC 6 cut(s) 146, 722, 800, 828, 1370, 1782
BtgI CCRYGG 2 cut(s) 987, 1220
BtrI CACGTC 2 cut(s) 475, 691
BtsI GCAGTG 1 cut(s) 1928
BtsIMutI CAGTG 4 cut(s) 819, 1928, 2667, 2755
BveI ACCTGC 5 cut(s) 1068, 1224, 1379, 3053, 3058
CaiI CAGNNNCTG 1 cut(s) 2669
CciI TCATGA 2 cut(s) 222, 2706
CfoI GCGC 5 cut(s) 231, 467, 582, 584, 2008
Cfr13I GGNCC 6 cut(s) 787, 799, 826, 1481, 1781, 2479
CseI GACGC 3 cut(s) 77, 136, 653
CsiI ACCWGGT 1 cut(s) 387
Csp6I GTAC 7 cut(s) 385, 1775, 2460, 2572, 2659, 2737, 2906
CviQI GTAC 7 cut(s) 385, 1775, 2460, 2572, 2659, 2737, 2906
DdeI CTNAG 9 cut(s) 757, 803, 1053, 1125, 1649, 1771, 2044, 2102, 2784
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 5 cut(s) 707, 1449, 1962, 2109, 2722
EarI CTCTTC 5 cut(s) 707, 1449, 1962, 2109, 2722
EciI GGCGGA 3 cut(s) 193, 223, 436
Ecl136II GAGCTC 3 cut(s) 160, 1052, 2041
Eco105I TACGTA 1 cut(s) 2571
Eco130I CCWWGG 5 cut(s) 987, 1220, 1381, 1787, 1890
Eco147I AGGCCT 1 cut(s) 722
Eco24I GRGCYC 6 cut(s) 162, 1054, 1717, 1861, 1898, 2043
Eco31I GGTCTC 2 cut(s) 2355, 3071
Eco47I GGWCC 3 cut(s) 787, 1481, 2479
Eco47III AGCGCT 1 cut(s) 230
Eco53kI GAGCTC 3 cut(s) 160, 1052, 2041
Eco57I CTGAAG 2 cut(s) 949, 2703
Eco81I CCTNAGG 2 cut(s) 803, 2102
Eco88I CYCGRG 2 cut(s) 401, 440
EcoICRI GAGCTC 3 cut(s) 160, 1052, 2041
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 799
EcoRI GAATTC 2 cut(s) 958, 1376
EcoRII CCWGG 6 cut(s) 141, 387, 722, 828, 888, 1322
EcoT14I CCWWGG 5 cut(s) 987, 1220, 1381, 1787, 1890
EcoT38I GRGCYC 6 cut(s) 162, 1054, 1717, 1861, 1898, 2043
ErhI CCWWGG 5 cut(s) 987, 1220, 1381, 1787, 1890
Esp3I CGTCTC 2 cut(s) 634, 2193
FaqI GGGAC 5 cut(s) 80, 550, 983, 1283, 2788
FauI CCCGC 4 cut(s) 257, 461, 593, 722
FblI GTMKAC 3 cut(s) 393, 552, 3029
FriOI GRGCYC 6 cut(s) 162, 1054, 1717, 1861, 1898, 2043
FspBI CTAG 6 cut(s) 63, 1382, 1854, 2066, 2336, 2505
GlaI GCGC 5 cut(s) 230, 466, 581, 583, 2007
GsaI CCCAGC 2 cut(s) 580, 2759
GsuI CTGGAG 3 cut(s) 515, 1306, 1577
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 6 cut(s) 146, 722, 800, 828, 1370, 1782
HapII CCGG 4 cut(s) 376, 850, 935, 2614
HgaI GACGC 3 cut(s) 77, 136, 653
HhaI GCGC 5 cut(s) 231, 467, 582, 584, 2008
Hin6I GCGC 5 cut(s) 229, 465, 580, 582, 2006
HinP1I GCGC 5 cut(s) 229, 465, 580, 582, 2006
HincII GTYRAC 4 cut(s) 167, 394, 553, 3030
HindII GTYRAC 4 cut(s) 167, 394, 553, 3030
HindIII AAGCTT 4 cut(s) 950, 1020, 1174, 2838
HpaII CCGG 4 cut(s) 376, 850, 935, 2614
Hpy166II GTNNAC 9 cut(s) 167, 268, 394, 478, 553, 1238, 1318, 2661, 3030
Hpy8I GTNNAC 9 cut(s) 167, 268, 394, 478, 553, 1238, 1318, 2661, 3030
Hpy99I CGWCG 9 cut(s) 19, 22, 130, 176, 428, 554, 647, 662, 674
HpyAV CCTTC 9 cut(s) 68, 145, 517, 973, 1163, 1300, 1426, 2463, 2750
HpyCH4III ACNGT 9 cut(s) 823, 1046, 1274, 1463, 1705, 1851, 2122, 2292, 2671
HpyCH4IV ACGT 5 cut(s) 459, 474, 690, 777, 2570
HpyF3I CTNAG 9 cut(s) 757, 803, 1053, 1125, 1649, 1771, 2044, 2102, 2784
HpySE526I ACGT 5 cut(s) 459, 474, 690, 777, 2570
HspAI GCGC 5 cut(s) 229, 465, 580, 582, 2006
LguI GCTCTTC 2 cut(s) 1962, 2722
LweI GCATC 9 cut(s) 105, 366, 914, 1081, 1495, 2068, 2329, 2702, 2798
MabI ACCWGGT 1 cut(s) 387
MaeI CTAG 6 cut(s) 63, 1382, 1854, 2066, 2336, 2505
MaeII ACGT 5 cut(s) 459, 474, 690, 777, 2570
MaeIII GTNAC 4 cut(s) 817, 1830, 1978, 3038
MbiI CCGCTC 2 cut(s) 44, 2446
MflI RGATCY 5 cut(s) 138, 570, 1202, 2551, 2969
MhlI GDGCHC 8 cut(s) 162, 1054, 1717, 1861, 1898, 2043, 2755, 2957
MmeI TCCRAC 3 cut(s) 639, 957, 2274
MroXI GAANNNNTTC 5 cut(s) 843, 962, 1196, 1242, 2229
MseI TTAA 8 cut(s) 1188, 1356, 1583, 1974, 2649, 2733, 2915, 2960
MslI CAYNNNNRTG 1 cut(s) 992
MspA1I CMGCKG 4 cut(s) 1104, 1124, 1521, 1574
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 4 cut(s) 376, 850, 935, 2614
MspR9I CCNGG 9 cut(s) 143, 377, 389, 724, 830, 851, 890, 935, 1324
Mva1269I GAATGC 2 cut(s) 770, 924
MvaI CCWGG 6 cut(s) 143, 389, 724, 830, 890, 1324
MvnI CGCG 6 cut(s) 71, 130, 189, 465, 582, 588
NciI CCSGG 3 cut(s) 377, 851, 935
NcoI CCATGG 2 cut(s) 987, 1220
NlaIV GGNNCC 6 cut(s) 1204, 1596, 1939, 2174, 2553, 2971
NmuCI GTSAC 3 cut(s) 817, 1978, 3038
NspI RCATGY 3 cut(s) 868, 2621, 2659
PaeI GCATGC 1 cut(s) 2621
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 2 cut(s) 222, 2706
PaqCI CACCTGC 1 cut(s) 1379
PauI GCGCGC 1 cut(s) 580
PceI AGGCCT 1 cut(s) 722
PciSI GCTCTTC 2 cut(s) 1962, 2722
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 399, 666, 2576
PctI GAATGC 2 cut(s) 770, 924
PdmI GAANNNNTTC 5 cut(s) 843, 962, 1196, 1242, 2229
Pfl23II CGTACG 1 cut(s) 2571
PflMI CCANNNNNTGG 1 cut(s) 2562
Ppu21I YACGTR 1 cut(s) 2571
PshBI ATTAAT 1 cut(s) 1356
Psp124BI GAGCTC 3 cut(s) 162, 1054, 2043
Psp6I CCWGG 6 cut(s) 141, 387, 722, 828, 888, 1322
PspFI CCCAGC 2 cut(s) 576, 2755
PspGI CCWGG 6 cut(s) 141, 387, 722, 828, 888, 1322
PspLI CGTACG 1 cut(s) 2571
PspN4I GGNNCC 6 cut(s) 1204, 1596, 1939, 2174, 2553, 2971
PspPI GGNCC 6 cut(s) 787, 799, 826, 1481, 1781, 2479
PspXI VCTCGAGB 1 cut(s) 440
PstI CTGCAG 2 cut(s) 1819, 3064
PstNI CAGNNNCTG 1 cut(s) 2669
PsuI RGATCY 5 cut(s) 138, 570, 1202, 2551, 2969
PteI GCGCGC 1 cut(s) 580
PvuII CAGCTG 2 cut(s) 1521, 1574
RsaI GTAC 7 cut(s) 386, 1776, 2461, 2573, 2660, 2738, 2907
RsaNI GTAC 7 cut(s) 385, 1775, 2460, 2572, 2659, 2737, 2906
RseI CAYNNNNRTG 1 cut(s) 992
SacI GAGCTC 3 cut(s) 162, 1054, 2043
SalI GTCGAC 3 cut(s) 392, 551, 3028
SapI GCTCTTC 2 cut(s) 1962, 2722
SaqAI TTAA 8 cut(s) 1188, 1356, 1583, 1974, 2649, 2733, 2915, 2960
Sau96I GGNCC 6 cut(s) 787, 799, 826, 1481, 1781, 2479
ScaI AGTACT 1 cut(s) 1776
ScrFI CCNGG 9 cut(s) 143, 377, 389, 724, 830, 851, 890, 935, 1324
SduI GDGCHC 8 cut(s) 162, 1054, 1717, 1861, 1898, 2043, 2755, 2957
SexAI ACCWGGT 1 cut(s) 387
SfaNI GCATC 9 cut(s) 105, 366, 914, 1081, 1495, 2068, 2329, 2702, 2798
SfcI CTRYAG 2 cut(s) 1815, 3060
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 3 cut(s) 787, 1481, 2479
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 7 cut(s) 440, 1187, 1337, 1485, 2352, 2392, 2887
SmoI CTYRAG 7 cut(s) 440, 1187, 1337, 1485, 2352, 2392, 2887
SnaBI TACGTA 1 cut(s) 2571
SphI GCATGC 1 cut(s) 2621
SseBI AGGCCT 1 cut(s) 722
SspI AATATT 1 cut(s) 1354
SspMI CTAG 6 cut(s) 63, 1382, 1854, 2066, 2336, 2505
SstI GAGCTC 3 cut(s) 162, 1054, 2043
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 9 cut(s) 141, 375, 387, 722, 828, 849, 888, 933, 1322
StyI CCWWGG 5 cut(s) 987, 1220, 1381, 1787, 1890
TaaI ACNGT 9 cut(s) 823, 1046, 1274, 1463, 1705, 1851, 2122, 2292, 2671
TaiI ACGT 5 cut(s) 462, 477, 693, 780, 2573
TaqII GACCGA 1 cut(s) 775
TatI WGTACW 3 cut(s) 1774, 2459, 2658
TauI GCSGC 9 cut(s) 47, 50, 53, 56, 452, 924, 1107, 3020, 3023
Tru1I TTAA 8 cut(s) 1188, 1356, 1583, 1974, 2649, 2733, 2915, 2960
Tru9I TTAA 8 cut(s) 1188, 1356, 1583, 1974, 2649, 2733, 2915, 2960
TscAI CASTG 4 cut(s) 826, 1935, 2674, 2755
TseFI GTSAC 3 cut(s) 817, 1978, 3038
Tsp45I GTSAC 3 cut(s) 817, 1978, 3038
TspGWI ACGGA 5 cut(s) 152, 253, 340, 378, 2204
TspRI CASTG 4 cut(s) 826, 1935, 2674, 2755
Van91I CCANNNNNTGG 1 cut(s) 2562
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 3 cut(s) 787, 1481, 2479
VspI ATTAAT 1 cut(s) 1356
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 3 cut(s) 958, 1376, 2276
XbaI TCTAGA 3 cut(s) 1853, 2065, 2335
XceI RCATGY 3 cut(s) 868, 2621, 2659
XcmI CCANNNNNNNNNTGG 1 cut(s) 994
XhoI CTCGAG 1 cut(s) 440
XmaJI CCTAGG 1 cut(s) 1381
XmiI GTMKAC 3 cut(s) 393, 552, 3029
XmnI GAANNNNTTC 5 cut(s) 843, 962, 1196, 1242, 2229
XspI CTAG 6 cut(s) 63, 1382, 1854, 2066, 2336, 2505
ZrmI AGTACT 1 cut(s) 1776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.