RLG00000025253

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011316
Physical Location & Seq
Reverse (-)
43407945 .. 43408755
811 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025253

Sequence Viewer

Length: 678 bp
ATGGGTTCTTCTTCGGTGATAAGCCCAGAAGATGTATTGGAGTCTCTAATGAACGACGGCACCATTGACTCTCTCAGATTAAAGATCATCAACCAGCTCAAAGCCAATGAAGAGCTGAAGAGCACGACGATCAAAATGGCGGAGCAAAGCCGAGTTCTCAACACTCCTGGGGCCGAGAAGCAGACGAAAAGAGAGCTGTTTGATGCTCTGAGGCAGGAGCTTGAGACCCAGGTGCTGGAGAAGGCTTCCAAGTCTGTTTGGGAGTTGATTTTGGACAACAATGGAATGGGAAAGGAAATCAATCAAACTGTTGAAAGGGTGTTCTGCAAACTCAGCGGCCGCGAACCGCCGCTGTTTCCTCCTCAACAAGATGCCAATGCCAGTGTTCAGGACAATGCCAATGCAAAGGGCAAGGGGAAGGCGAATGGGAAAGGAAAAGTGAAGGGGAAGGGGAAGGGGAAAGAGAAGGTGAAGGAGGCGGCGAGTGAACTAGTTGAAGCCAAGCCTGAGGAGGAGAAATCGAATTCAAAGAAGAGGAGTTTCAGTGAGGTGAATGCACAAGGAGAAGGAGATGGAGAACCTCCTGTAGGGTTGGACCTAAAAGTTGAAGCCAAGCCTGAAGTTGAAGCCAGGCCTGAAGAAGGTCCTGTAGTTATGGCGGAAGACCCTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.48

Weight (kDa)

5.22

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 342
AciI CCGC 7 cut(s) 140, 336, 340, 347, 350, 479, 659
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 3 cut(s) 137, 639, 657
AfiI CCNNNNNNNGG 3 cut(s) 235, 587, 641
AgsI TTSAA 5 cut(s) 314, 497, 528, 608, 626
AhlI ACTAGT 1 cut(s) 490
AjnI CCWGG 3 cut(s) 166, 228, 629
AluBI AGCT 4 cut(s) 97, 115, 196, 220
AluI AGCT 4 cut(s) 97, 115, 196, 220
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 218
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 3 cut(s) 171, 337, 632
ApoI RAATTY 1 cut(s) 523
AspS9I GGNCC 3 cut(s) 171, 595, 644
AsuHPI GGTGA 3 cut(s) 28, 481, 562
AvaII GGWCC 2 cut(s) 595, 644
AxyI CCTNAGG 1 cut(s) 507
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 3 cut(s) 168, 230, 631
BcoDI GTCTC 2 cut(s) 48, 218
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 2 cut(s) 585, 648
BisI GCNGC 4 cut(s) 337, 340, 350, 480
BlsI GCNGC 4 cut(s) 338, 341, 351, 481
Bme1390I CCNGG 3 cut(s) 168, 230, 631
Bme18I GGWCC 2 cut(s) 595, 644
BmgT120I GGNCC 3 cut(s) 171, 595, 644
BmiI GGNNCC 2 cut(s) 61, 172
BmrFI CCNGG 3 cut(s) 168, 230, 631
BmsI GCATC 2 cut(s) 193, 361
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 242, 654
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 167, 228
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 587, 641
Bse1I ACTGG 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 3 cut(s) 168, 230, 631
BseDI CCNNGG 2 cut(s) 167, 228
BseLI CCNNNNNNNGG 3 cut(s) 235, 587, 641
BseMII CTCAG 4 cut(s) 88, 200, 346, 498
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 4 cut(s) 351, 524, 527, 550
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 3 cut(s) 173, 339, 634
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 235, 587, 641
BsmAI GTCTC 2 cut(s) 48, 218
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 173, 339, 634
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 84, 129
BspACI CCGC 7 cut(s) 140, 336, 340, 347, 350, 479, 659
BspANI GGCC 3 cut(s) 173, 339, 634
BspCNI CTCAG 4 cut(s) 87, 201, 345, 499
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 61, 172
BspQI GCTCTTC 2 cut(s) 105, 113
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 167, 228
BssMI GATC 2 cut(s) 84, 129
Bst2UI CCWGG 3 cut(s) 168, 230, 631
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 3 cut(s) 105, 113, 527
BstDEI CTNAG 4 cut(s) 74, 209, 332, 507
BstENI CCTNNNNNAGG 2 cut(s) 585, 639
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 87, 132
BstMAI GTCTC 2 cut(s) 48, 218
BstMBI GATC 2 cut(s) 84, 129
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 3 cut(s) 168, 230, 631
BstSCI CCNGG 3 cut(s) 166, 228, 629
BstSFI CTRYAG 2 cut(s) 585, 648
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 669
BstZI CGGCCG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 3 cut(s) 173, 339, 634
BtsIMutI CAGTG 2 cut(s) 388, 550
CaiI CAGNNNCTG 1 cut(s) 235
CciNI GCGGCCGC 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 171, 595, 644
DdeI CTNAG 4 cut(s) 74, 209, 332, 507
DpnI GATC 2 cut(s) 86, 131
DpnII GATC 2 cut(s) 84, 129
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 105, 113, 527
EarI CTCTTC 3 cut(s) 105, 113, 527
EciI GGCGGA 2 cut(s) 155, 674
EclXI CGGCCG 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 595, 644
Eco52I CGGCCG 1 cut(s) 337
Eco57I CTGAAG 3 cut(s) 137, 639, 657
Eco81I CCTNAGG 1 cut(s) 507
EcoNI CCTNNNNNAGG 2 cut(s) 585, 639
EcoO109I RGGNCCY 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 3 cut(s) 166, 228, 629
FaiI YATR 1 cut(s) 656
Fnu4HI GCNGC 4 cut(s) 337, 340, 350, 480
Fsp4HI GCNGC 4 cut(s) 337, 340, 350, 480
FspBI CTAG 1 cut(s) 491
GluI GCNGC 4 cut(s) 337, 340, 350, 480
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 173, 339, 634
HinfI GANTC 2 cut(s) 41, 68
HphI GGTGA 3 cut(s) 28, 481, 562
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 2 cut(s) 77, 210
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 2 cut(s) 59, 130
HpyAV CCTTC 9 cut(s) 235, 412, 436, 442, 448, 460, 466, 560, 635
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 327, 404, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 4 cut(s) 74, 209, 332, 507
Kzo9I GATC 2 cut(s) 84, 129
LguI GCTCTTC 2 cut(s) 105, 113
LmnI GCTCC 2 cut(s) 142, 217
LweI GCATC 2 cut(s) 193, 361
MaeI CTAG 1 cut(s) 491
MalI GATC 2 cut(s) 86, 131
MboI GATC 2 cut(s) 84, 129
MboII GAAGA 7 cut(s) 3, 41, 122, 130, 544, 650, 674
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 523
MlyI GAGTC 2 cut(s) 50, 62
MmeI TCCRAC 1 cut(s) 573
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 336, 352
MspR9I CCNGG 3 cut(s) 168, 230, 631
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 3 cut(s) 168, 230, 631
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 2 cut(s) 84, 129
NlaIV GGNNCC 2 cut(s) 61, 172
NmeAIII GCCGAG 2 cut(s) 176, 199
NotI GCGGCCGC 1 cut(s) 337
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 2 cut(s) 105, 113
PctI GAATGC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 4 cut(s) 338, 341, 351, 481
PleI GAGTC 2 cut(s) 49, 62
PpsI GAGTC 2 cut(s) 49, 62
PpuMI RGGWCCY 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 644
Psp6I CCWGG 3 cut(s) 166, 228, 629
PspGI CCWGG 3 cut(s) 166, 228, 629
PspN4I GGNNCC 2 cut(s) 61, 172
PspPI GGNCC 3 cut(s) 171, 595, 644
PspPPI RGGWCCY 1 cut(s) 644
PstNI CAGNNNCTG 1 cut(s) 235
SapI GCTCTTC 2 cut(s) 105, 113
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 4 cut(s) 337, 340, 350, 480
Sau3AI GATC 2 cut(s) 84, 129
Sau96I GGNCC 3 cut(s) 171, 595, 644
SchI GAGTC 2 cut(s) 50, 62
ScrFI CCNGG 3 cut(s) 168, 230, 631
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 2 cut(s) 193, 361
SfcI CTRYAG 2 cut(s) 585, 648
SinI GGWCC 2 cut(s) 595, 644
SmlI CTYRAG 2 cut(s) 221, 669
SmoI CTYRAG 2 cut(s) 221, 669
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 1 cut(s) 523
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 7 cut(s) 140, 336, 340, 347, 350, 479, 659
SspMI CTAG 1 cut(s) 491
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 3 cut(s) 166, 228, 629
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 521
TasI AATT 1 cut(s) 523
TauI GCSGC 4 cut(s) 339, 342, 352, 482
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 2 cut(s) 388, 550
TspDTI ATGAA 2 cut(s) 65, 123
TspRI CASTG 2 cut(s) 388, 550
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 595, 644
XagI CCTNNNNNAGG 2 cut(s) 585, 639
XapI RAATTY 1 cut(s) 523
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.