Rh3CG079900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011316
Physical Location & Seq
Forward (+)
6204659 .. 6206855
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG079900.1

Sequence Viewer

Length: 690 bp
ATGGGTTCTTCTTCGGTGATAAGCCCAGAAGATGTATTGGAGTCTCTAATGAACGACGGCACCATTGACTCTCTCAGATTGAAGATCATCAACCAGCTCAAAGCCAATGAAGAGCTGAAGAGCACGACAATCAAAATGGCGGAGCAAAGCCGAGTTCTCAACACTCCCGGGGCCGAGAAGCAGACGAAAAGAGAGCTGTTTGATGCTCTGAGGCAGGAGCTTGAGACCCAAGTGCTGGAGAAGGCTTCCAAGTCTGTTTGGGAGTTGATTTTGGATAACAATGGAATGGGAAAGGAAATCAATCATACTGTTGAAAGGGTGTTCTGCAAGCTAAGCGGCCGCGAACCGCCGCTGTTTCCTCCTCAACAAGATGCCGATGCCAGTGTTCAGGACAATGCCAATCCTAATGCTAATGCAAAGGGCAAGGGGAAGGCGAATGGGAAAGGAAAAGTGAAGGGGAAGGGGAAGGGGAAAGAGAAGGTAAAGGAAGCGGTGAGTGAACAAGTTGAAGCCAAGCCTGAGGAGGAGAAGTCGAATTCAAAGAAGAGGAGTTTCAGTGAAGTGAATGCACAAGGAGAAGGAGATGGAGAACCTCCTGTAGGGTTGGACATAAAAGTTGAAGCCAAGCCTGTAGTTGAAGCCATGCCTGAAGAAGGTCCTGTAGCTATGGCGGAAGACCCTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.84

Weight (kDa)

5.2

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 342
AciI CCGC 7 cut(s) 140, 336, 340, 347, 350, 491, 671
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 2 cut(s) 137, 669
AfiI CCNNNNNNNGG 3 cut(s) 235, 599, 653
AgsI TTSAA 6 cut(s) 82, 314, 509, 540, 620, 638
AluBI AGCT 6 cut(s) 97, 115, 196, 220, 331, 665
AluI AGCT 6 cut(s) 97, 115, 196, 220, 331, 665
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 218
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 171, 337
ApoI RAATTY 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 171, 656
AsuC2I CCSGG 2 cut(s) 168, 169
AsuHPI GGTGA 2 cut(s) 28, 505
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 519
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 168, 169
BcoDI GTCTC 2 cut(s) 48, 218
BfmI CTRYAG 3 cut(s) 597, 630, 660
BisI GCNGC 3 cut(s) 337, 340, 350
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 338, 341, 351
Bme1390I CCNGG 2 cut(s) 168, 169
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 171, 656
BmiI GGNNCC 2 cut(s) 61, 172
BmrFI CCNGG 2 cut(s) 168, 169
BmsI GCATC 3 cut(s) 193, 361, 367
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 242, 666
BpuMI CCSGG 2 cut(s) 168, 169
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 167, 168
BsaXI ACNNNNNCTCC 4 cut(s) 515, 541, 545, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 599, 653
Bse1I ACTGG 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 167, 168
BseLI CCNNNNNNNGG 3 cut(s) 235, 599, 653
BseMII CTCAG 3 cut(s) 88, 200, 510
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 4 cut(s) 351, 536, 539, 562
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 173, 339
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 235, 599, 653
BsmAI GTCTC 2 cut(s) 48, 218
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 173, 339
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 7 cut(s) 140, 336, 340, 347, 350, 491, 671
BspANI GGCC 2 cut(s) 173, 339
BspCNI CTCAG 3 cut(s) 87, 201, 511
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 61, 172
BspQI GCTCTTC 2 cut(s) 105, 113
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 167, 168
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 3 cut(s) 105, 113, 539
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 4 cut(s) 74, 209, 332, 519
BstENI CCTNNNNNAGG 2 cut(s) 597, 651
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 48, 218
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 166, 167
BstSFI CTRYAG 3 cut(s) 597, 630, 660
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 681
BstZI CGGCCG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 2 cut(s) 173, 339
BtsIMutI CAGTG 2 cut(s) 388, 562
Cac8I GCNNGC 1 cut(s) 329
CciNI GCGGCCGC 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 171, 656
Cfr9I CCCGGG 1 cut(s) 167
CviAII CATG 1 cut(s) 643
DdeI CTNAG 4 cut(s) 74, 209, 332, 519
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 105, 113, 539
EarI CTCTTC 3 cut(s) 105, 113, 539
EciI GGCGGA 2 cut(s) 155, 686
EclXI CGGCCG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 656
Eco52I CGGCCG 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 137, 669
Eco81I CCTNAGG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 167
EcoNI CCTNNNNNAGG 2 cut(s) 597, 651
EcoO109I RGGNCCY 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 535
FaeI CATG 1 cut(s) 646
FaiI YATR 4 cut(s) 306, 611, 644, 668
FatI CATG 1 cut(s) 642
Fnu4HI GCNGC 3 cut(s) 337, 340, 350
Fsp4HI GCNGC 3 cut(s) 337, 340, 350
GluI GCNGC 3 cut(s) 337, 340, 350
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 2 cut(s) 173, 339
HapII CCGG 1 cut(s) 168
Hin1II CATG 1 cut(s) 646
HinfI GANTC 2 cut(s) 41, 68
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 28, 505
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 77, 210
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 8 cut(s) 235, 424, 448, 454, 460, 472, 572, 647
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 327, 416, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 4 cut(s) 74, 209, 332, 519
Hsp92II CATG 1 cut(s) 646
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 2 cut(s) 105, 113
LmnI GCTCC 2 cut(s) 142, 217
LweI GCATC 3 cut(s) 193, 361, 367
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 8 cut(s) 3, 41, 94, 122, 130, 556, 662, 686
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 535
MlyI GAGTC 2 cut(s) 50, 62
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 8 cut(s) 204, 369, 372, 514, 517, 540, 603, 690
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 168, 169
Mva1269I GAATGC 1 cut(s) 571
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 333
NciI CCSGG 2 cut(s) 168, 169
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 646
NlaIV GGNNCC 2 cut(s) 61, 172
NmeAIII GCCGAG 2 cut(s) 176, 199
NotI GCGGCCGC 1 cut(s) 337
PciSI GCTCTTC 2 cut(s) 105, 113
PctI GAATGC 1 cut(s) 571
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 3 cut(s) 338, 341, 351
PleI GAGTC 2 cut(s) 49, 62
PpsI GAGTC 2 cut(s) 49, 62
PpuMI RGGWCCY 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 61, 172
PspPI GGNCC 2 cut(s) 171, 656
PspPPI RGGWCCY 1 cut(s) 656
SapI GCTCTTC 2 cut(s) 105, 113
SatI GCNGC 3 cut(s) 337, 340, 350
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 171, 656
SchI GAGTC 2 cut(s) 50, 62
ScrFI CCNGG 2 cut(s) 168, 169
SduI GDGCHC 1 cut(s) 125
SetI ASST 9 cut(s) 99, 117, 198, 222, 333, 483, 595, 658, 667
SfaNI GCATC 3 cut(s) 193, 361, 367
SfcI CTRYAG 3 cut(s) 597, 630, 660
SinI GGWCC 1 cut(s) 656
SmaI CCCGGG 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 221, 681
SmoI CTYRAG 2 cut(s) 221, 681
Sse9I AATT 1 cut(s) 535
SsiI CCGC 7 cut(s) 140, 336, 340, 347, 350, 491, 671
StyD4I CCNGG 2 cut(s) 166, 167
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 533
TasI AATT 1 cut(s) 535
TauI GCSGC 3 cut(s) 339, 342, 352
TscAI CASTG 2 cut(s) 388, 562
TspDTI ATGAA 2 cut(s) 65, 123
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 2 cut(s) 388, 562
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 656
XagI CCTNNNNNAGG 2 cut(s) 597, 651
XapI RAATTY 1 cut(s) 535
XmaI CCCGGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.