FvH4_6g07410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007517
Physical Location & Seq
Reverse (-)
4438246 .. 4441249
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07410.t3

Sequence Viewer

Length: 1575 bp
ATGGTTCAAGAGGTTGGATTTGATGGGATTTCCATGGGAGGAAATAGGGAAAGTGGTAGCGAGTCTTCTTCTTCTGCTTGTTCAGAGCAGTTTCAGGATTCAATGCATGAGTCTATCAACTCTGGTTGTCATAATGATGAAATCTCAGAAGCTGCAAACAAGAGGCTTAAGGAAACTCCTATTCAGTCCAACGAAAAGGCTCAACTGGCGCAAACCCTTCTAAGCTTACCACCACTTGGTTTGTCACTTGGGAAGACGCCCTCTTTCTTGGACTTGAAAGAAAAATTTCCCCGCAAACGAAAGCCCAAGCGTGCAGCTGAAGTTAATGTTCAATCTATGTCCGAGAAGGAAAAACTGAAAGCTTCTAACTTCTGTGCCTCGTTACTCAGAATTGGTTCATGGCAGAGAGTAACTGAACATGAAGGTGACCTGGTTGCAAAGTGTTACTATGCTAAGAGAAAACTGGTTTGGGAAATCTTGGATAATGGTTTGAAGAGCAAGATTGAATTGCAGTGGTCTGATATTATTGCTATTAGAGCTGTAATTGAAGAAAACCAACCTGGCATTCTAGAGATTGAGCTAGGCCAGCCACCTACATTTCATCGAGAGTCTAATCCACAGCCAAGAAAGCATACTATGTGGAATCCCGCAACAGATTTCACCGGCGGTGCAGCTCTCATTCACAGGAGGCATTATCTTCAGTTCCCGCCTGGTTTGCTTGACAAACACTATGAGAAGCTTTTACAATGTGAAAGCCGGTTTTTAGAGATGAGCCAGAGACCTTTCCCAAGTCAAAGATCTCCTTACTTCCAATCATACAATGGAGGTGCGGATATTTCTTTCGAATTTGGTAGCCTTGGAGCGGAAATCCCTTCCAACTTACCGTTACAATTCCCAACACATCTGGATCCTAGACAAATTCAAGCATATGAAGAAACAAAAGCATCTCTCTGTTACACAGATTCTACTTCACCAGTATCAGTTATGGATTTTTCTTCGCCTTTAGATGAGGTCATCGGCAACCAAGGAGTTGAAACTCAGTGTGTGCCATCATCATGGGATTCACAAGTCGTTGCATATCTTTTAGCGAGAGATCAAATTCCACAACCGGTTTCTGCAGCAGAAGCACACTTCAATCCAGCCATTTCTTTCCAAAACTTCAATGAACCAATAGCTTATAATCAAGGGTCCCAAACGCTGTACAATATCGACATCGAAAAGCAGTTGTTCAGCCACATGCAGATTCAGAGTTACAACAACTCACTAGGCTCATCATCAGCATTTCCAGAGAATTTGAATTCTGGAGCAATTACTGGTATTGAGCAAACAAACTATGACCAGATAATGAGTGCTAACACAAACTTGATTCCGGGTGCAAGGGATCATACAGGCCAGGCTCTCCCGTTAAGCTGGATGATGGCACCTCTACCAAACAGCTGGGGTGCGCCGCCCCAAGTTGTTCCTTCGAGGCACTCAGGGATACATCCGGCTGATAACAACTTGAGGTATTCATCTTTCAATCCAAATCCAACAACAGATGACTATGCCGCTTTCAACAACTCGGTGAACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

525

Amino Acids

58.32

Weight (kDa)

5.51

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 123 - 241 2.6e-54 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1179
AccB1I GGYRCC 1 cut(s) 1420
AccB7I CCANNNNNTGG 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 863
AciI CCGC 9 cut(s) 292, 648, 666, 707, 830, 863, 1448, 1548, 1570
AclWI GGATC 3 cut(s) 902, 915, 1389
AcsI RAATTY 6 cut(s) 284, 845, 918, 1098, 1291, 1297
AcuI CTGAAG 2 cut(s) 339, 683
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 1202
AfiI CCNNNNNNNGG 2 cut(s) 236, 862
AflII CTTAAG 1 cut(s) 167
AgeI ACCGGT 1 cut(s) 1108
AjnI CCWGG 4 cut(s) 429, 559, 709, 1392
AjuI GAANNNNNNNTTGG 4 cut(s) 451, 483, 549, 581
Alw26I GTCTC 1 cut(s) 772
AlwI GGATC 3 cut(s) 902, 915, 1389
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 2 cut(s) 583, 1390
ApeKI GCWGC 4 cut(s) 152, 314, 671, 1118
ApoI RAATTY 6 cut(s) 284, 845, 918, 1098, 1291, 1297
AsiGI ACCGGT 1 cut(s) 1108
Asp700I GAANNNNTTC 2 cut(s) 285, 394
AspLEI GCGC 2 cut(s) 211, 1447
AspS9I GGNCC 1 cut(s) 1188
AsuC2I CCSGG 1 cut(s) 1371
AsuHPI GGTGA 3 cut(s) 437, 652, 963
AsuII TTCGAA 1 cut(s) 843
AvaII GGWCC 1 cut(s) 1188
BamHI GGATCC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 1420
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbsI GAAGAC 2 cut(s) 57, 260
BbvI GCAGC 4 cut(s) 139, 326, 683, 1130
BccI CCATC 3 cut(s) 17, 1057, 1411
BciT130I CCWGG 4 cut(s) 431, 561, 711, 1394
BciVI GTATCC 1 cut(s) 1473
BcnI CCSGG 1 cut(s) 1371
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 4 cut(s) 569, 581, 912, 1265
BfmI CTRYAG 1 cut(s) 1116
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 1473
BglII AGATCT 1 cut(s) 797
BisI GCNGC 6 cut(s) 153, 315, 672, 1119, 1448, 1548
BlsI GCNGC 6 cut(s) 154, 316, 673, 1120, 1449, 1549
Bme1390I CCNGG 5 cut(s) 431, 561, 711, 1371, 1394
Bme18I GGWCC 1 cut(s) 1188
BmgT120I GGNCC 1 cut(s) 1188
BmiI GGNNCC 4 cut(s) 909, 1189, 1190, 1422
BmrFI CCNGG 5 cut(s) 431, 561, 711, 1371, 1394
BmsI GCATC 1 cut(s) 953
BpiI GAAGAC 2 cut(s) 57, 260
BpmI CTGGAG 1 cut(s) 1323
Bpu14I TTCGAA 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 1522
BpuMI CCSGG 1 cut(s) 1371
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 3 cut(s) 33, 856, 1024
BsaWI WCCGGW 1 cut(s) 1108
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 862
Bse118I RCCGGY 3 cut(s) 662, 756, 1108
Bse1I ACTGG 4 cut(s) 210, 468, 974, 1318
BseBI CCWGG 4 cut(s) 431, 561, 711, 1394
BseDI CCNNGG 3 cut(s) 33, 856, 1024
BseGI GGATG 2 cut(s) 1419, 1483
BseLI CCNNNNNNNGG 2 cut(s) 236, 862
BseMII CTCAG 4 cut(s) 159, 400, 1052, 1488
BseNI ACTGG 4 cut(s) 210, 468, 974, 1318
BseXI GCAGC 4 cut(s) 139, 326, 683, 1130
BseYI CCCAGC 1 cut(s) 1437
BsgI GTGCAG 2 cut(s) 333, 690
BshFI GGCC 2 cut(s) 585, 1392
BshNI GGYRCC 1 cut(s) 1420
BshTI ACCGGT 1 cut(s) 1108
BsiSI CCGG 5 cut(s) 663, 757, 1109, 1370, 1487
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 2 cut(s) 236, 862
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 1174
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 2 cut(s) 585, 1392
Bso31I GGTCTC 1 cut(s) 772
Bsp119I TTCGAA 1 cut(s) 843
Bsp1407I TGTACA 1 cut(s) 1200
Bsp143I GATC 4 cut(s) 797, 907, 1093, 1381
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 9 cut(s) 292, 648, 666, 707, 830, 863, 1448, 1548, 1570
BspANI GGCC 2 cut(s) 585, 1392
BspCNI CTCAG 4 cut(s) 158, 399, 1051, 1487
BspLI GGNNCC 4 cut(s) 909, 1189, 1190, 1422
BspMAI CTGCAG 1 cut(s) 1120
BspPI GGATC 3 cut(s) 902, 915, 1389
BspQI GCTCTTC 1 cut(s) 488
BspT104I TTCGAA 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 1420
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 863
BsrFI RCCGGY 3 cut(s) 662, 756, 1108
BsrGI TGTACA 1 cut(s) 1200
BsrI ACTGG 4 cut(s) 210, 468, 974, 1318
BssAI RCCGGY 3 cut(s) 662, 756, 1108
BssECI CCNNGG 3 cut(s) 33, 856, 1024
BssMI GATC 4 cut(s) 797, 907, 1093, 1381
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 3 cut(s) 33, 856, 1024
Bst2UI CCWGG 4 cut(s) 431, 561, 711, 1394
Bst4CI ACNGT 1 cut(s) 885
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 1200
BstBI TTCGAA 1 cut(s) 843
BstC8I GCNNGC 2 cut(s) 312, 587
BstDEI CTNAG 6 cut(s) 145, 221, 386, 453, 1038, 1474
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 2 cut(s) 1419, 1483
BstHHI GCGC 2 cut(s) 211, 1447
BstKTI GATC 4 cut(s) 800, 910, 1096, 1384
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 4 cut(s) 797, 907, 1093, 1381
BstMWI GCNNNNNNNGC 6 cut(s) 206, 536, 586, 628, 715, 1124
BstNI CCWGG 4 cut(s) 431, 561, 711, 1394
BstNSI RCATGY 1 cut(s) 1240
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 5 cut(s) 429, 559, 709, 1369, 1392
BstSFI CTRYAG 1 cut(s) 1116
BstV1I GCAGC 4 cut(s) 139, 326, 683, 1130
BstV2I GAAGAC 2 cut(s) 57, 260
BstX2I RGATCY 2 cut(s) 797, 907
BstXI CCANNNNNNTGG 2 cut(s) 1056, 1437
BstYI RGATCY 2 cut(s) 797, 907
BsuI GTATCC 1 cut(s) 1473
BsuRI GGCC 2 cut(s) 585, 1392
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 1419, 1483
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 518, 1046
Cac8I GCNNGC 2 cut(s) 312, 587
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 2 cut(s) 211, 1447
Cfr10I RCCGGY 3 cut(s) 662, 756, 1108
Cfr13I GGNCC 1 cut(s) 1188
CseI GACGC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 1201
CspAI ACCGGT 1 cut(s) 1108
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 6 cut(s) 34, 107, 399, 419, 1056, 1237
CviQI GTAC 1 cut(s) 1201
DdeI CTNAG 6 cut(s) 145, 221, 386, 453, 1038, 1474
DpnI GATC 4 cut(s) 799, 909, 1095, 1383
DpnII GATC 4 cut(s) 797, 907, 1093, 1381
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 3 cut(s) 33, 856, 1024
Eco31I GGTCTC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 1188
Eco57I CTGAAG 2 cut(s) 339, 683
Eco91I GGTNACC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 1188
EcoO65I GGTNACC 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 1297
EcoRII CCWGG 4 cut(s) 429, 559, 709, 1392
EcoT14I CCWWGG 3 cut(s) 33, 856, 1024
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 3 cut(s) 33, 856, 1024
FaeI CATG 6 cut(s) 37, 110, 402, 422, 1059, 1240
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FaqI GGGAC 1 cut(s) 1174
FatI CATG 6 cut(s) 33, 106, 398, 418, 1055, 1236
FauI CCCGC 3 cut(s) 299, 655, 714
FauNDI CATATG 1 cut(s) 928
Fnu4HI GCNGC 6 cut(s) 153, 315, 672, 1119, 1448, 1548
FokI GGATG 2 cut(s) 1426, 1470
Fsp4HI GCNGC 6 cut(s) 153, 315, 672, 1119, 1448, 1548
FspBI CTAG 4 cut(s) 569, 581, 912, 1265
GlaI GCGC 2 cut(s) 210, 1446
GluI GCNGC 6 cut(s) 153, 315, 672, 1119, 1448, 1548
GsaI CCCAGC 1 cut(s) 1441
GsuI CTGGAG 1 cut(s) 1323
HaeIII GGCC 2 cut(s) 585, 1392
HapII CCGG 5 cut(s) 663, 757, 1109, 1370, 1487
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 211, 1447
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 6 cut(s) 37, 110, 402, 422, 1059, 1240
Hin6I GCGC 2 cut(s) 209, 1445
HinP1I GCGC 2 cut(s) 209, 1445
HindIII AAGCTT 3 cut(s) 223, 360, 737
HinfI GANTC 9 cut(s) 62, 98, 110, 608, 643, 962, 1061, 1243, 1366
HpaII CCGG 5 cut(s) 663, 757, 1109, 1370, 1487
HphI GGTGA 3 cut(s) 437, 652, 963
Hpy166II GTNNAC 1 cut(s) 1567
Hpy188I TCNGA 6 cut(s) 85, 148, 343, 389, 520, 1248
Hpy188III TCNNGA 7 cut(s) 8, 95, 569, 605, 905, 1286, 1302
Hpy8I GTNNAC 1 cut(s) 1567
HpyAV CCTTC 5 cut(s) 227, 340, 416, 882, 1473
HpyCH4III ACNGT 1 cut(s) 885
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 536, 586, 628, 715, 1124
HpyF3I CTNAG 6 cut(s) 145, 221, 386, 453, 1038, 1474
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 6 cut(s) 37, 110, 402, 422, 1059, 1240
HspAI GCGC 2 cut(s) 209, 1445
KflI GGGWCCC 1 cut(s) 1188
Kzo9I GATC 4 cut(s) 797, 907, 1093, 1381
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 2 cut(s) 860, 1304
Lsp1109I GCAGC 4 cut(s) 139, 326, 683, 1130
LweI GCATC 1 cut(s) 953
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 4 cut(s) 569, 581, 912, 1265
MaeIII GTNAC 8 cut(s) 243, 381, 409, 425, 443, 885, 953, 1250
MalI GATC 4 cut(s) 799, 909, 1095, 1383
MbiI CCGCTC 1 cut(s) 863
MboI GATC 4 cut(s) 797, 907, 1093, 1381
MboII GAAGA 9 cut(s) 57, 60, 63, 265, 505, 560, 689, 944, 987
MflI RGATCY 2 cut(s) 797, 907
MlyI GAGTC 3 cut(s) 71, 119, 617
MmeI TCCRAC 3 cut(s) 213, 900, 1553
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 285, 394
MseI TTAA 3 cut(s) 168, 324, 1406
MslI CAYNNNNRTG 3 cut(s) 135, 423, 1054
MspA1I CMGCKG 3 cut(s) 317, 1437, 1572
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 5 cut(s) 663, 757, 1109, 1370, 1487
MspR9I CCNGG 5 cut(s) 431, 561, 711, 1371, 1394
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 4 cut(s) 431, 561, 711, 1394
MwoI GCNNNNNNNGC 6 cut(s) 206, 536, 586, 628, 715, 1124
NciI CCSGG 1 cut(s) 1371
NcoI CCATGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 928
NdeII GATC 4 cut(s) 797, 907, 1093, 1381
NlaIII CATG 6 cut(s) 37, 110, 402, 422, 1059, 1240
NlaIV GGNNCC 4 cut(s) 909, 1189, 1190, 1422
NmuCI GTSAC 2 cut(s) 243, 425
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 1240
NspV TTCGAA 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 1 cut(s) 564
PdmI GAANNNNTTC 2 cut(s) 285, 394
PfeI GAWTC 6 cut(s) 98, 643, 962, 1061, 1243, 1366
PflMI CCANNNNNTGG 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 1108
PkrI GCNGC 6 cut(s) 154, 316, 673, 1120, 1449, 1549
PleI GAGTC 3 cut(s) 70, 118, 616
PpsI GAGTC 3 cut(s) 70, 118, 616
PpuMI RGGWCCY 1 cut(s) 1188
PsiI TTATAA 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 1188
Psp6I CCWGG 4 cut(s) 429, 559, 709, 1392
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 1437
PspGI CCWGG 4 cut(s) 429, 559, 709, 1392
PspN4I GGNNCC 4 cut(s) 909, 1189, 1190, 1422
PspPI GGNCC 1 cut(s) 1188
PspPPI RGGWCCY 1 cut(s) 1188
PstI CTGCAG 1 cut(s) 1120
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 797, 907
PvuII CAGCTG 2 cut(s) 317, 1437
RsaI GTAC 1 cut(s) 1202
RsaNI GTAC 1 cut(s) 1201
RseI CAYNNNNRTG 3 cut(s) 135, 423, 1054
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 3 cut(s) 168, 324, 1406
SatI GCNGC 6 cut(s) 153, 315, 672, 1119, 1448, 1548
Sau3AI GATC 4 cut(s) 797, 907, 1093, 1381
Sau96I GGNCC 1 cut(s) 1188
SchI GAGTC 3 cut(s) 71, 119, 617
ScrFI CCNGG 5 cut(s) 431, 561, 711, 1371, 1394
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 1 cut(s) 953
SfcI CTRYAG 1 cut(s) 1116
SfuI TTCGAA 1 cut(s) 843
SgrAI CRCCGGYG 1 cut(s) 662
SinI GGWCC 1 cut(s) 1188
SmiMI CAYNNNNRTG 3 cut(s) 135, 423, 1054
SmlI CTYRAG 2 cut(s) 167, 1501
SmoI CTYRAG 2 cut(s) 167, 1501
SsiI CCGC 9 cut(s) 292, 648, 666, 707, 830, 863, 1448, 1548, 1570
SspMI CTAG 4 cut(s) 569, 581, 912, 1265
StyD4I CCNGG 5 cut(s) 429, 559, 709, 1369, 1392
StyI CCWWGG 3 cut(s) 33, 856, 1024
TaaI ACNGT 1 cut(s) 885
TaqI TCGA 5 cut(s) 604, 843, 1209, 1215, 1466
TatI WGTACW 1 cut(s) 1200
TauI GCSGC 2 cut(s) 1450, 1550
TfiI GAWTC 6 cut(s) 98, 643, 962, 1061, 1243, 1366
Tru1I TTAA 3 cut(s) 168, 324, 1406
Tru9I TTAA 3 cut(s) 168, 324, 1406
TscAI CASTG 2 cut(s) 518, 1046
TseFI GTSAC 2 cut(s) 243, 425
TseI GCWGC 4 cut(s) 152, 314, 671, 1118
Tsp45I GTSAC 2 cut(s) 243, 425
TspDTI ATGAA 7 cut(s) 153, 387, 435, 590, 945, 1179, 1500
TspRI CASTG 2 cut(s) 518, 1046
Van91I CCANNNNNTGG 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 1188
XapI RAATTY 6 cut(s) 284, 845, 918, 1098, 1291, 1297
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 1 cut(s) 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XmnI GAANNNNTTC 2 cut(s) 285, 394
XspI CTAG 4 cut(s) 569, 581, 912, 1265
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.