Rmu_sc0008561.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008561.1
OG0007517
Physical Location & Seq
Forward (+)
6047 .. 7212
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008561.1_g000002.1.cds

Sequence Viewer

Length: 606 bp
atgcttcaagaggttggttttgatgggatttccgtgacaggaaatacggaaagtggtagtgagtcttcttcttctgcttgttctgagcagtttcagaattcaatgcatgagtctatcaactctggttgtcattatgatgaaatctcacaagctgcaaataagaggcttagagaaactccaatcgactccaatgaaaaggctcaactggctcaaacccttctaagcttaccaccacttggtttgtcacttgggaagacgccctctttcttggacttgaaagaagaattgccccgcaaacgaaagagtaagcgtgcagctgaagttaacgttcaatcgatgtccgagaaggaaaaattgaaagcttctaacttctgtgcctcgttactcagaattggttcatggcagagagtaagtgaacatgaaggagacctggttgcaaagtgttactatgctaagcgaaaactggtgtgggaaatattggatagtggtttgaagagcaagattgaagtgcagtggtctgatattatctctttgagagctgtcattgaagaaaaccaacctggcattctagaaattgaggttatgcttctttcaactagtaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.3

Weight (kDa)

5.54

Isoelectric Point (pI)

65.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 1 cut(s) 292
AclI AACGTT 1 cut(s) 327
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 9 cut(s) 8, 102, 277, 332, 358, 493, 506, 548, 594
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 2 cut(s) 429, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 5 cut(s) 152, 225, 317, 362, 539
AluI AGCT 5 cut(s) 152, 225, 317, 362, 539
Alw26I GTCTC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 152, 314
ApoI RAATTY 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbsI GAAGAC 2 cut(s) 57, 260
BbvI GCAGC 2 cut(s) 139, 326
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 2 cut(s) 431, 561
BcoDI GTCTC 1 cut(s) 420
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 569, 597
BisI GCNGC 2 cut(s) 153, 315
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 2 cut(s) 154, 316
Bme1390I CCNGG 2 cut(s) 431, 561
BmrFI CCNGG 2 cut(s) 431, 561
BpiI GAAGAC 2 cut(s) 57, 260
Bpu1102I GCTNAGC 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 210, 468
BseBI CCWGG 2 cut(s) 431, 561
BseCI ATCGAT 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 75, 400
BseNI ACTGG 2 cut(s) 210, 468
BseXI GCAGC 2 cut(s) 139, 326
BsgI GTGCAG 2 cut(s) 333, 530
BshVI ATCGAT 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 564
Bso31I GGTCTC 1 cut(s) 420
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 76, 399
BspDI ATCGAT 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 2 cut(s) 210, 468
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 431, 561
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 5 cut(s) 84, 167, 221, 386, 453
BstMAI GTCTC 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 431, 561
BstSCI CCNGG 2 cut(s) 429, 559
BstV1I GCAGC 2 cut(s) 139, 326
BstV2I GAAGAC 2 cut(s) 57, 260
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 312
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 429
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 3 cut(s) 107, 399, 419
CviJI RGCY 8 cut(s) 152, 166, 200, 209, 225, 317, 362, 539
CviKI_1 RGCY 8 cut(s) 152, 166, 200, 209, 225, 317, 362, 539
DdeI CTNAG 5 cut(s) 84, 167, 221, 386, 453
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 429, 559
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 3 cut(s) 110, 402, 422
FaiI YATR 6 cut(s) 108, 135, 400, 420, 450, 584
FatI CATG 3 cut(s) 106, 398, 418
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 153, 315
Fsp4HI GCNGC 2 cut(s) 153, 315
FspBI CTAG 2 cut(s) 569, 597
GluI GCNGC 2 cut(s) 153, 315
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 3 cut(s) 110, 402, 422
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 223, 360
HinfI GANTC 3 cut(s) 62, 110, 185
HpaI GTTAAC 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 325, 416
Hpy188I TCNGA 5 cut(s) 85, 96, 343, 389, 520
Hpy188III TCNNGA 2 cut(s) 8, 569
Hpy8I GTNNAC 2 cut(s) 325, 416
HpyAV CCTTC 3 cut(s) 227, 340, 416
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 106, 155, 314, 437, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 5 cut(s) 84, 167, 221, 386, 453
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 3 cut(s) 110, 402, 422
KspAI GTTAAC 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 488
LpnPI CCDG 8 cut(s) 24, 108, 191, 416, 443, 449, 546, 573
Lsp1109I GCAGC 2 cut(s) 139, 326
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 2 cut(s) 569, 597
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 34, 243, 381, 443
MboII GAAGA 7 cut(s) 57, 60, 63, 265, 293, 505, 560
MluCI AATT 6 cut(s) 97, 284, 353, 390, 573, 601
MlyI GAGTC 3 cut(s) 71, 119, 179
MnlI CCTC 5 cut(s) 4, 156, 271, 388, 571
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 431, 561
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 2 cut(s) 431, 561
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 3 cut(s) 110, 402, 422
NmuCI GTSAC 2 cut(s) 34, 243
NsiI ATGCAT 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 2 cut(s) 154, 316
PleI GAGTC 3 cut(s) 70, 118, 179
PpsI GAGTC 3 cut(s) 70, 118, 179
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 429, 559
PspGI CCWGG 2 cut(s) 429, 559
PvuII CAGCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 153, 315
SchI GAGTC 3 cut(s) 71, 119, 179
ScrFI CCNGG 2 cut(s) 431, 561
SexAI ACCWGGT 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 6 cut(s) 97, 284, 353, 390, 573, 601
SsiI CCGC 1 cut(s) 292
SspI AATATT 1 cut(s) 477
SspMI CTAG 2 cut(s) 569, 597
StyD4I CCNGG 2 cut(s) 429, 559
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 183, 335
TasI AATT 6 cut(s) 97, 284, 353, 390, 573, 601
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 518
TseFI GTSAC 2 cut(s) 34, 243
TseI GCWGC 2 cut(s) 152, 314
Tsp45I GTSAC 2 cut(s) 34, 243
TspDTI ATGAA 4 cut(s) 153, 207, 387, 435
TspGWI ACGGA 2 cut(s) 22, 62
TspRI CASTG 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 2 cut(s) 569, 597
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.