Rh3BG080100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007517
Physical Location & Seq
Reverse (-)
6206264 .. 6208663
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG080100.1

Sequence Viewer

Length: 1548 bp
ATGCTTCAAGAGGTTGGTTTTGATGGGATTTCCGTGACAGGAAATACGGAAAGTGGTACTGAGTCTTCTTCTTCTGCTTGTTCTGAGCAGTTTCAGAATTCAATGCATGAGTCTATCAACTCTGGTTGTCATTATGATGAAATCTCACAAGCTGCAAATAAGAGGCTTAAAGAAACTCCAATCGACTCCAATGAAAAGGCTCAACTGGCTCAAACCCTTCTAAGCTTACCACCACTTGGTTTGTCACTTGGGAAGACGCCCTCTTTCTTGGACTTGAAAGAAGAATTGCCCCGCAAACGAAAGAGTAAGCGTGCAGCTGAAGTTAACGTTCAATCGATGTCCGAGAAGGAAAAATTGAAAGCTTCTAACTTCTGTGCCTCGTTACTCAGAATTGGTTCATGGCAGAGAGTAAGTGAACATGAAGGAGACCTGGTTGCAAAGTGTTACTATGCTAAGCGAAAACTGGTGTGGGAAATATTGGATAGTGGTTTGAAGAGCAAGATTGAAGTGCAGTGGTCTGATATTATCTCTTTGAGGGCTGTCATTGAAGAAAACCAACCTGGCATTCTAGAAATTGAGCTAGGCCAGCCACCTACATTTTATCGAGAGTCTAATCCACAGCCAAGAAAGCACACTATGTGGAATCCCGCAACAGATTTCACCAGCGGTGAAGCTCTCATTCACAGGAGGCATTATCTTCAGTTCCCGCCTGGTTTGCTTGACAAACACTATGAGAAGCTTATACAATGTGAAAGCCGGTTTTTAGAGTTGAGCCAAAGACCTTTCCCGAGCCAAAGATCTCCGTACTTCCGATCACACAATGGAGGTGCAAATATTTCTTTTGAATTTGGCAGCCATGGAGCAGAAATCCCCTCCAAGTTACCGTTACAATTCCCAATACATCTGGATCCTCAACAAATTCATACATATGAACAAACCAAACCATCTCTTTGTTACACAGATTCTACTTCACCAATATCAGATGAGGTCATCGGCAACCAAGGAGTTGAAAATCAGTGTGTGCCATCATCATGGGATCCGCAAGTCATTGCATATCTTCTAGGGAGAGATCAAATTCCAGCACCGGTTTCTACAGCAGAAGCTCAGTTCAATCCAGCCATTCCTCGCCAAAACTTCAATGAACCAATACCTTATAATCAAGAGTCCCAAATGCTGTTCAATATCGAAAAGCAGTTGTTCAGTCACTTGCAGATTCAGTGTCACAGCAATTCACCAGGCTCATCAATAGCAGTTCCAGAGAACTTGAATCATGGAGCGATTACTGGTACCAATCAAACAGGCTATGACCGGGAAATGAGTGCTAACACAAACTTGATTCCGGGTGCAAGGGATCATACAGGCCAGACGCTTCCATTAGGCTGGGTGATGGCACCTCTACAAAACAGCTGGGGTATGCCGCCTCAAGTTGTTCCTTCGAGGCACTCAGGAATGCACCCAGCTGACGGCTCGAGGTATTCATCTTTCAATCAAAATCCAACAACAGATGACTTTGCCGCTTTCAACAACTCGGAGAACCGCTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

515

Amino Acids

57.66

Weight (kDa)

5.88

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 123 - 241 2.8e-55 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1155
Acc65I GGTACC 1 cut(s) 1286
AccB1I GGYRCC 2 cut(s) 1286, 1390
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 8 cut(s) 292, 648, 666, 707, 1040, 1418, 1515, 1537
AclI AACGTT 1 cut(s) 327
AclWI GGATC 5 cut(s) 902, 915, 1031, 1044, 1359
AcsI RAATTY 4 cut(s) 97, 845, 918, 1074
AcuI CTGAAG 2 cut(s) 339, 683
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 639
AfaI GTAC 3 cut(s) 58, 806, 1288
AfiI CCNNNNNNNGG 2 cut(s) 236, 1463
AgeI ACCGGT 1 cut(s) 1084
AjnI CCWGG 4 cut(s) 429, 559, 709, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 5 cut(s) 902, 915, 1031, 1044, 1359
Ama87I CYCGRG 2 cut(s) 787, 1468
AoxI GGCC 2 cut(s) 583, 1360
ApeKI GCWGC 3 cut(s) 152, 314, 852
ApoI RAATTY 4 cut(s) 97, 845, 918, 1074
AsiGI ACCGGT 1 cut(s) 1084
Asp700I GAANNNNTTC 1 cut(s) 394
Asp718I GGTACC 1 cut(s) 1286
AsuC2I CCSGG 2 cut(s) 1310, 1341
AsuHPI GGTGA 5 cut(s) 652, 680, 963, 1224, 1396
AvaI CYCGRG 2 cut(s) 787, 1468
BamHI GGATCC 2 cut(s) 907, 1036
BanI GGYRCC 2 cut(s) 1286, 1390
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbsI GAAGAC 2 cut(s) 57, 260
BbvI GCAGC 3 cut(s) 139, 326, 864
BccI CCATC 4 cut(s) 17, 952, 1033, 1381
BceAI ACGGC 1 cut(s) 1480
BciT130I CCWGG 4 cut(s) 431, 561, 711, 1236
BcnI CCSGG 2 cut(s) 1310, 1341
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 569, 581, 1061
BfmI CTRYAG 1 cut(s) 1092
BglII AGATCT 1 cut(s) 797
BisI GCNGC 5 cut(s) 153, 315, 853, 1418, 1515
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 5 cut(s) 154, 316, 854, 1419, 1516
Bme1390I CCNGG 6 cut(s) 431, 561, 711, 1236, 1310, 1341
BmeT110I CYCGRG 2 cut(s) 787, 1468
BmiI GGNNCC 4 cut(s) 909, 1038, 1288, 1392
BmrFI CCNGG 6 cut(s) 431, 561, 711, 1236, 1310, 1341
BpiI GAAGAC 2 cut(s) 57, 260
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 1407
BpuMI CCSGG 2 cut(s) 1310, 1341
Bsa29I ATCGAT 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 856, 1000
BsaWI WCCGGW 1 cut(s) 1084
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 1463
Bse118I RCCGGY 2 cut(s) 756, 1084
Bse1I ACTGG 3 cut(s) 210, 468, 1288
Bse3DI GCAATG 1 cut(s) 1047
BseBI CCWGG 4 cut(s) 431, 561, 711, 1236
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 856, 1000
BseLI CCNNNNNNNGG 2 cut(s) 236, 1463
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 5 cut(s) 51, 75, 400, 1118, 1458
BseNI ACTGG 3 cut(s) 210, 468, 1288
BseXI GCAGC 3 cut(s) 139, 326, 864
BseYI CCCAGC 3 cut(s) 1380, 1407, 1456
BsgI GTGCAG 2 cut(s) 333, 530
BshFI GGCC 2 cut(s) 585, 1362
BshNI GGYRCC 2 cut(s) 1286, 1390
BshTI ACCGGT 1 cut(s) 1084
BshVI ATCGAT 1 cut(s) 335
BsiHKCI CYCGRG 2 cut(s) 787, 1468
BsiSI CCGG 4 cut(s) 757, 1085, 1309, 1340
BslFI GGGAC 1 cut(s) 1150
BslI CCNNNNNNNGG 2 cut(s) 236, 1463
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 1150
BsmI GAATGC 2 cut(s) 564, 1455
BsnI GGCC 2 cut(s) 585, 1362
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 2 cut(s) 787, 1468
Bsp143I GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
Bsp1720I GCTNAGC 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 856
BspACI CCGC 8 cut(s) 292, 648, 666, 707, 1040, 1418, 1515, 1537
BspANI GGCC 2 cut(s) 585, 1362
BspCNI CTCAG 5 cut(s) 52, 76, 399, 1117, 1457
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 4 cut(s) 909, 1038, 1288, 1392
BspPI GGATC 5 cut(s) 902, 915, 1031, 1044, 1359
BspQI GCTCTTC 1 cut(s) 488
BspT107I GGYRCC 2 cut(s) 1286, 1390
BspTNI GGTCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 2 cut(s) 756, 1084
BsrI ACTGG 3 cut(s) 210, 468, 1288
BssAI RCCGGY 2 cut(s) 756, 1084
BssECI CCNNGG 2 cut(s) 856, 1000
BssMI GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 856, 1000
Bst2UI CCWGG 4 cut(s) 431, 561, 711, 1236
Bst4CI ACNGT 1 cut(s) 885
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 312, 587
BstDEI CTNAG 7 cut(s) 60, 84, 221, 386, 453, 1104, 1444
BstDSI CCRYGG 1 cut(s) 856
BstKTI GATC 6 cut(s) 800, 815, 910, 1039, 1072, 1354
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
BstMWI GCNNNNNNNGC 4 cut(s) 206, 586, 628, 715
BstNI CCWGG 4 cut(s) 431, 561, 711, 1236
BstSCI CCNGG 6 cut(s) 429, 559, 709, 1234, 1308, 1339
BstSFI CTRYAG 1 cut(s) 1092
BstV1I GCAGC 3 cut(s) 139, 326, 864
BstV2I GAAGAC 2 cut(s) 57, 260
BstX2I RGATCY 3 cut(s) 797, 907, 1036
BstXI CCANNNNNNTGG 2 cut(s) 1032, 1380
BstYI RGATCY 3 cut(s) 797, 907, 1036
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 2 cut(s) 585, 1362
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 856
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 3 cut(s) 518, 1022, 1223
Cac8I GCNNGC 2 cut(s) 312, 587
Cfr10I RCCGGY 2 cut(s) 756, 1084
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 2 cut(s) 265, 1375
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 3 cut(s) 57, 805, 1287
CspAI ACCGGT 1 cut(s) 1084
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 6 cut(s) 107, 399, 419, 857, 1032, 1271
CviQI GTAC 3 cut(s) 57, 805, 1287
DdeI CTNAG 7 cut(s) 60, 84, 221, 386, 453, 1104, 1444
DpnI GATC 6 cut(s) 799, 814, 909, 1038, 1071, 1353
DpnII GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
DraIII CACNNNGTG 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 856, 1000
Eco31I GGTCTC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 339, 683
Eco88I CYCGRG 2 cut(s) 787, 1468
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 4 cut(s) 429, 559, 709, 1234
EcoT14I CCWWGG 2 cut(s) 856, 1000
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 856, 1000
FaeI CATG 6 cut(s) 110, 402, 422, 860, 1035, 1274
FaqI GGGAC 1 cut(s) 1150
FatI CATG 6 cut(s) 106, 398, 418, 856, 1031, 1270
FauI CCCGC 3 cut(s) 299, 655, 714
FauNDI CATATG 1 cut(s) 928
Fnu4HI GCNGC 5 cut(s) 153, 315, 853, 1418, 1515
Fsp4HI GCNGC 5 cut(s) 153, 315, 853, 1418, 1515
FspBI CTAG 3 cut(s) 569, 581, 1061
GluI GCNGC 5 cut(s) 153, 315, 853, 1418, 1515
GsaI CCCAGC 3 cut(s) 1384, 1411, 1460
HaeIII GGCC 2 cut(s) 585, 1362
HapII CCGG 4 cut(s) 757, 1085, 1309, 1340
HgaI GACGC 2 cut(s) 265, 1375
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 6 cut(s) 110, 402, 422, 860, 1035, 1274
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 3 cut(s) 223, 360, 737
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 4 cut(s) 757, 1085, 1309, 1340
HphI GGTGA 5 cut(s) 652, 680, 963, 1224, 1396
Hpy166II GTNNAC 2 cut(s) 325, 416
Hpy188I TCNGA 8 cut(s) 85, 96, 343, 389, 520, 812, 982, 1531
Hpy188III TCNNGA 8 cut(s) 8, 569, 605, 787, 905, 1160, 1256, 1446
Hpy8I GTNNAC 2 cut(s) 325, 416
HpyAV CCTTC 4 cut(s) 227, 340, 416, 1443
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 586, 628, 715
HpyF3I CTNAG 7 cut(s) 60, 84, 221, 386, 453, 1104, 1444
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 6 cut(s) 110, 402, 422, 860, 1035, 1274
KpnI GGTACC 1 cut(s) 1290
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 2 cut(s) 860, 1274
Lsp1109I GCAGC 3 cut(s) 139, 326, 864
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 3 cut(s) 569, 581, 1061
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 9 cut(s) 34, 243, 381, 443, 879, 885, 953, 1202, 1220
MalI GATC 6 cut(s) 799, 814, 909, 1038, 1071, 1353
MboI GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
MboII GAAGA 9 cut(s) 57, 60, 63, 265, 293, 505, 560, 689, 1049
MflI RGATCY 3 cut(s) 797, 907, 1036
MlyI GAGTC 5 cut(s) 71, 119, 179, 617, 1172
MmeI TCCRAC 1 cut(s) 1520
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 2 cut(s) 168, 324
MslI CAYNNNNRTG 3 cut(s) 135, 927, 1030
MspA1I CMGCKG 5 cut(s) 317, 666, 1407, 1460, 1539
MspI CCGG 4 cut(s) 757, 1085, 1309, 1340
MspR9I CCNGG 6 cut(s) 431, 561, 711, 1236, 1310, 1341
Mva1269I GAATGC 2 cut(s) 564, 1455
MvaI CCWGG 4 cut(s) 431, 561, 711, 1236
MwoI GCNNNNNNNGC 4 cut(s) 206, 586, 628, 715
NciI CCSGG 2 cut(s) 1310, 1341
NcoI CCATGG 1 cut(s) 856
NdeI CATATG 1 cut(s) 928
NdeII GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
NlaIII CATG 6 cut(s) 110, 402, 422, 860, 1035, 1274
NlaIV GGNNCC 4 cut(s) 909, 1038, 1288, 1392
NmuCI GTSAC 4 cut(s) 34, 243, 1202, 1220
NsiI ATGCAT 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 1468
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 2 cut(s) 564, 1455
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 5 cut(s) 643, 962, 1213, 1267, 1336
PflMI CCANNNNNTGG 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 1084
PkrI GCNGC 5 cut(s) 154, 316, 854, 1419, 1516
PleI GAGTC 5 cut(s) 70, 118, 179, 616, 1171
PpsI GAGTC 5 cut(s) 70, 118, 179, 616, 1171
PsiI TTATAA 1 cut(s) 1155
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 4 cut(s) 429, 559, 709, 1234
PspFI CCCAGC 3 cut(s) 1380, 1407, 1456
PspGI CCWGG 4 cut(s) 429, 559, 709, 1234
PspN4I GGNNCC 4 cut(s) 909, 1038, 1288, 1392
PspXI VCTCGAGB 1 cut(s) 1468
PsuI RGATCY 3 cut(s) 797, 907, 1036
PvuII CAGCTG 3 cut(s) 317, 1407, 1460
RsaI GTAC 3 cut(s) 58, 806, 1288
RsaNI GTAC 3 cut(s) 57, 805, 1287
RseI CAYNNNNRTG 3 cut(s) 135, 927, 1030
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 168, 324
SatI GCNGC 5 cut(s) 153, 315, 853, 1418, 1515
Sau3AI GATC 6 cut(s) 797, 812, 907, 1036, 1069, 1351
SchI GAGTC 5 cut(s) 71, 119, 179, 617, 1172
ScrFI CCNGG 6 cut(s) 431, 561, 711, 1236, 1310, 1341
SexAI ACCWGGT 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 1092
Sfr274I CTCGAG 1 cut(s) 1468
SlaI CTCGAG 1 cut(s) 1468
SmiMI CAYNNNNRTG 3 cut(s) 135, 927, 1030
SmlI CTYRAG 2 cut(s) 1422, 1468
SmoI CTYRAG 2 cut(s) 1422, 1468
SsiI CCGC 8 cut(s) 292, 648, 666, 707, 1040, 1418, 1515, 1537
SspI AATATT 2 cut(s) 477, 835
SspMI CTAG 3 cut(s) 569, 581, 1061
StyD4I CCNGG 6 cut(s) 429, 559, 709, 1234, 1308, 1339
StyI CCWWGG 2 cut(s) 856, 1000
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 1 cut(s) 330
TaqI TCGA 6 cut(s) 183, 335, 604, 1185, 1436, 1469
TauI GCSGC 2 cut(s) 1420, 1517
TfiI GAWTC 5 cut(s) 643, 962, 1213, 1267, 1336
Tru1I TTAA 2 cut(s) 168, 324
Tru9I TTAA 2 cut(s) 168, 324
TscAI CASTG 3 cut(s) 518, 1022, 1223
TseFI GTSAC 4 cut(s) 34, 243, 1202, 1220
TseI GCWGC 3 cut(s) 152, 314, 852
Tsp45I GTSAC 4 cut(s) 34, 243, 1202, 1220
TspDTI ATGAA 8 cut(s) 153, 207, 387, 435, 911, 945, 1155, 1467
TspGWI ACGGA 3 cut(s) 22, 62, 792
TspRI CASTG 3 cut(s) 518, 1022, 1223
Van91I CCANNNNNTGG 1 cut(s) 236
XapI RAATTY 4 cut(s) 97, 845, 918, 1074
XbaI TCTAGA 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 1468
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 3 cut(s) 569, 581, 1061
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.